Wall clock time and date at job start Fri Apr 10 2020 22:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48495 * 109.46982 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47179 * 240.00010 * 3 2 1 6 6 H 1.48499 * 109.46866 * 120.00054 * 3 2 1 7 7 C 1.38813 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 215.37984 * 7 2 1 9 9 N 1.36938 * 120.00305 * 35.38702 * 7 2 1 10 10 C 1.43462 * 118.94596 * 203.00043 * 9 7 2 11 11 C 1.53802 * 107.95558 * 273.60637 * 10 9 7 12 12 C 1.47137 * 111.84019 * 281.66266 * 11 10 9 13 13 N 1.48216 * 110.34233 * 58.29989 * 12 11 10 14 14 C 1.34770 * 119.96920 * 102.47135 * 13 12 11 15 15 O 1.21615 * 120.00141 * 356.85866 * 14 13 12 16 16 C 1.47378 * 119.99847 * 176.86608 * 14 13 12 17 17 C 1.36420 * 127.19092 * 15.85798 * 16 14 13 18 18 O 1.33658 * 108.39404 * 179.97438 * 17 16 14 19 19 C 1.34211 * 110.91014 * 0.02562 * 18 17 16 20 20 C 1.50702 * 125.43801 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.46597 * 119.97543 * 20 19 18 22 22 F 1.39894 * 109.47252 * 239.97674 * 20 19 18 23 23 C 1.34173 * 109.12396 * 359.74630 * 19 18 17 24 24 C 1.43625 * 120.05653 * 282.49185 * 13 12 11 25 25 C 1.48862 * 118.93655 * 22.72341 * 9 7 2 26 26 H 0.96996 * 120.00184 * 185.85995 * 1 2 3 27 27 H 1.09002 * 109.76249 * 33.21818 * 10 9 7 28 28 H 1.08999 * 109.76947 * 153.93774 * 10 9 7 29 29 H 1.09003 * 109.00501 * 42.26901 * 11 10 9 30 30 H 1.09003 * 109.00677 * 161.04970 * 11 10 9 31 31 H 1.08996 * 109.32401 * 178.56608 * 12 11 10 32 32 H 1.08998 * 109.32436 * 298.20367 * 12 11 10 33 33 H 1.07994 * 125.80285 * 359.97362 * 17 16 14 34 34 H 1.09001 * 109.47062 * 359.97438 * 20 19 18 35 35 H 1.08004 * 127.02782 * 180.26677 * 23 19 18 36 36 H 1.09001 * 108.87070 * 211.44613 * 24 13 12 37 37 H 1.08999 * 108.87429 * 329.98114 * 24 13 12 38 38 H 1.09005 * 109.48220 * 260.62992 * 25 9 7 39 39 H 1.09004 * 109.48182 * 20.66113 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 2.9405 -1.2884 0.5421 9 7 1.5152 -2.2789 -0.6857 10 6 1.9265 -3.5977 -0.2988 11 6 3.2376 -3.9206 -1.0351 12 6 2.9989 -4.3037 -2.4355 13 7 2.2929 -3.2165 -3.1540 14 6 2.9754 -2.4057 -3.9865 15 8 4.1795 -2.5295 -4.1044 16 6 2.2626 -1.3688 -4.7539 17 6 1.0021 -0.8975 -4.5299 18 8 0.7318 0.0362 -5.4473 19 6 1.7711 0.2052 -6.2794 20 6 1.8185 1.1740 -7.4329 21 9 2.8686 2.0779 -7.2397 22 9 2.0220 0.4704 -8.6247 23 6 2.7632 -0.6225 -5.9175 24 6 0.8821 -3.0261 -2.9635 25 6 0.5627 -2.0435 -1.8053 26 1 -0.4850 -0.8356 0.0858 27 1 2.0907 -3.6314 0.7783 28 1 1.1590 -4.3198 -0.5773 29 1 3.8830 -3.0424 -1.0124 30 1 3.7395 -4.7415 -0.5230 31 1 3.9537 -4.4982 -2.9240 32 1 2.3890 -5.2067 -2.4635 33 1 0.3360 -1.2234 -3.7448 34 1 0.8759 1.7185 -7.4889 35 1 3.7312 -0.7216 -6.3861 36 1 0.4512 -2.6364 -3.8858 37 1 0.4234 -3.9892 -2.7399 38 1 -0.4567 -2.2075 -1.4559 39 1 0.6649 -1.0179 -2.1600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981828097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:53 Heat of formation + Delta-G solvation = -80.582940 kcal Electronic energy + Delta-G solvation = -27562.236343 eV Core-core repulsion = 23336.789801 eV Total energy + Delta-G solvation = -4225.446542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.18035 -48.19079 -43.91663 -41.21465 -38.77716 -36.24667 -35.17545 -33.91229 -32.97973 -31.94573 -29.62200 -27.51509 -26.95505 -25.58005 -24.98468 -23.00134 -22.34416 -21.58032 -20.67243 -19.43503 -18.84591 -18.56768 -18.40986 -18.08614 -17.49107 -17.20515 -16.97385 -16.45169 -16.02112 -15.75243 -15.43692 -15.08524 -15.05075 -14.71004 -14.54821 -14.45289 -14.39243 -14.14120 -14.03245 -13.74822 -13.49828 -12.98679 -12.71395 -12.53814 -12.40909 -12.15512 -12.09773 -11.97597 -11.86148 -11.44315 -11.22729 -11.07076 -10.35169 -10.11714 -9.73841 -8.92584 -8.30608 -5.29992 0.06710 0.55608 1.18941 1.49926 1.55375 1.74277 1.86877 2.09973 2.58268 2.81787 2.99673 3.04764 3.31605 3.47361 3.55321 3.69068 3.79680 3.82542 4.01145 4.05499 4.08412 4.31639 4.33933 4.41145 4.48127 4.56165 4.64593 4.77850 4.88728 4.90844 4.94686 5.06653 5.16095 5.38967 5.57492 5.62429 5.88814 6.30518 6.41095 7.02843 7.08987 7.80704 8.16634 8.94652 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.005625 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.548336 B = 4976.244560 C = 6198.267633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.049 4.049 3 Si 1.073 2.927 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.032 0.968 9 N -0.603 5.603 10 C 0.160 3.840 11 C -0.156 4.156 12 C 0.129 3.871 13 N -0.578 5.578 14 C 0.582 3.418 15 O -0.586 6.586 16 C -0.259 4.259 17 C 0.042 3.958 18 O -0.151 6.151 19 C -0.106 4.106 20 C 0.368 3.632 21 F -0.195 7.195 22 F -0.189 7.189 23 C -0.123 4.123 24 C 0.067 3.933 25 C 0.125 3.875 26 H 0.261 0.739 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -4.744 -13.388 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.249 4.249 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.209 1.209 7 C -0.491 4.491 8 H 0.050 0.950 9 N -0.327 5.327 10 C 0.033 3.967 11 C -0.197 4.197 12 C 0.008 3.992 13 N -0.307 5.307 14 C 0.373 3.627 15 O -0.468 6.468 16 C -0.263 4.263 17 C -0.028 4.028 18 O -0.046 6.046 19 C -0.155 4.155 20 C 0.314 3.686 21 F -0.176 7.176 22 F -0.170 7.170 23 C -0.143 4.143 24 C -0.057 4.057 25 C -0.001 4.001 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.267 0.733 34 H 0.199 0.801 35 H 0.182 0.818 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.668 -3.037 -13.558 14.148 hybrid contribution 1.000 -1.538 0.726 1.973 sum -1.668 -4.576 -12.832 13.725 Atomic orbital electron populations 1.70928 1.07001 1.29401 1.48253 1.26247 0.96227 1.02903 0.99507 0.83396 0.74844 0.75110 0.76588 1.20754 1.22728 1.20887 1.19871 1.03699 0.93418 1.32116 0.95041 1.43800 1.53259 1.02119 1.33476 1.20450 0.93960 0.86023 0.96248 1.21668 1.00483 1.00595 0.96908 1.20765 0.98195 0.88666 0.91536 1.47309 1.09549 1.31644 1.42219 1.17507 0.85999 0.80230 0.78985 1.90692 1.15338 1.71966 1.68846 1.21566 0.96797 1.05352 1.02606 1.26433 0.96965 0.87451 0.91932 1.83758 1.38558 1.47929 1.34341 1.22918 0.88478 1.05029 0.99076 1.19480 0.91829 0.81494 0.75765 1.93059 1.62169 1.67259 1.95089 1.93052 1.96327 1.80612 1.47023 1.22731 1.00422 0.95519 0.95642 1.22586 0.80985 1.02850 0.99328 1.22361 0.92812 0.97473 0.87459 0.92944 0.94824 0.91543 0.95911 0.89321 0.90874 0.87382 0.73279 0.80117 0.81841 0.87734 0.87141 0.93842 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 12.64 21.65 0.27 -50.65 16 2 C -0.05 -2.65 4.34 84.86 0.37 -2.28 16 3 Si 1.07 51.46 30.04 68.60 2.06 53.52 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.36 -19.53 9.05 84.03 0.76 -18.77 16 8 H 0.03 1.83 8.03 -2.91 -0.02 1.80 16 9 N -0.60 -27.10 2.42 -697.37 -1.69 -28.79 16 10 C 0.16 5.91 5.63 87.21 0.49 6.41 16 11 C -0.16 -5.30 5.64 29.04 0.16 -5.14 16 12 C 0.13 3.87 5.68 84.23 0.48 4.35 16 13 N -0.58 -19.42 2.46 -834.46 -2.05 -21.47 16 14 C 0.58 22.96 7.66 86.65 0.66 23.62 16 15 O -0.59 -26.99 16.47 -4.08 -0.07 -27.06 16 16 C -0.26 -9.09 6.07 -18.99 -0.12 -9.20 16 17 C 0.04 1.29 9.26 67.40 0.62 1.91 16 18 O -0.15 -4.16 10.52 4.45 0.05 -4.12 16 19 C -0.11 -2.81 6.71 24.76 0.17 -2.64 16 20 C 0.37 7.01 5.75 71.24 0.41 7.42 16 21 F -0.19 -4.54 17.32 44.97 0.78 -3.76 16 22 F -0.19 -3.88 17.32 44.97 0.78 -3.10 16 23 C -0.12 -3.92 10.93 23.65 0.26 -3.66 16 24 C 0.07 1.91 4.72 87.67 0.41 2.33 16 25 C 0.12 4.78 4.45 86.68 0.39 5.16 16 26 H 0.26 14.42 7.09 -92.71 -0.66 13.76 16 27 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 28 H 0.07 2.02 7.59 -2.39 -0.02 2.00 16 29 H 0.02 0.98 7.91 -2.39 -0.02 0.96 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.34 7.16 -2.39 -0.02 2.33 16 32 H 0.11 2.35 8.05 -2.39 -0.02 2.33 16 33 H 0.25 7.14 3.15 -2.91 -0.01 7.13 16 34 H 0.18 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.16 5.03 8.06 -2.91 -0.02 5.01 16 36 H 0.11 2.51 4.39 -2.39 -0.01 2.50 16 37 H 0.11 2.43 7.72 -2.39 -0.02 2.41 16 38 H 0.04 1.66 7.44 -2.38 -0.02 1.64 16 39 H 0.05 2.10 4.89 -2.38 -0.01 2.09 16 Total: -1.00 -71.69 322.20 6.42 -65.27 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.22 Total: 10.66 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.07 Total: 9.51 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.47 Total: -100.91 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.02 Total: -31.17 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.56 Total: -6.87 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal Total: -71.69 6.42 -65.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981828097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.308 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds