Wall clock time and date at job start Fri Apr 10 2020 22:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47174 * 86.50417 * 3 2 1 5 5 H 1.48499 * 109.47001 * 326.50635 * 3 2 1 6 6 H 1.48502 * 109.47510 * 206.50661 * 3 2 1 7 7 C 1.38810 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99862 * 26.84711 * 7 2 1 9 9 N 1.36935 * 120.00105 * 206.84190 * 7 2 1 10 10 C 1.43465 * 118.93949 * 204.09213 * 9 7 2 11 11 C 1.53799 * 107.95840 * 273.60676 * 10 9 7 12 12 C 1.47136 * 111.84105 * 281.66617 * 11 10 9 13 13 N 1.48216 * 110.34251 * 58.29592 * 12 11 10 14 14 C 1.34778 * 119.96651 * 102.46898 * 13 12 11 15 15 O 1.21692 * 120.00340 * 6.01736 * 14 13 12 16 16 C 1.46655 * 119.99822 * 186.02757 * 14 13 12 17 17 C 1.36551 * 125.98713 * 186.06867 * 16 14 13 18 18 C 1.40367 * 106.70527 * 179.90687 * 17 16 14 19 19 C 1.35134 * 107.11520 * 0.34966 * 18 17 16 20 20 C 1.50696 * 125.61359 * 179.78038 * 19 18 17 21 21 F 1.39898 * 109.47402 * 300.02831 * 20 19 18 22 22 F 1.39901 * 109.47055 * 60.02707 * 20 19 18 23 23 O 1.33926 * 108.76682 * 359.78409 * 19 18 17 24 24 C 1.43617 * 120.06100 * 282.49286 * 13 12 11 25 25 C 1.48854 * 118.93981 * 23.81698 * 9 7 2 26 26 H 0.97006 * 120.00271 * 185.09715 * 1 2 3 27 27 H 1.09000 * 109.76898 * 33.22669 * 10 9 7 28 28 H 1.09005 * 109.76378 * 153.94040 * 10 9 7 29 29 H 1.08999 * 109.00230 * 42.27863 * 11 10 9 30 30 H 1.08998 * 109.00405 * 161.13459 * 11 10 9 31 31 H 1.09004 * 109.32198 * 178.56290 * 12 11 10 32 32 H 1.08999 * 109.32747 * 298.20305 * 12 11 10 33 33 H 1.07994 * 126.64495 * 0.03148 * 17 16 14 34 34 H 1.07999 * 126.43706 * 180.12122 * 18 17 16 35 35 H 1.08997 * 109.46976 * 180.02562 * 20 19 18 36 36 H 1.09005 * 108.86970 * 211.44487 * 24 13 12 37 37 H 1.08995 * 108.87541 * 329.87757 * 24 13 12 38 38 H 1.09001 * 109.48696 * 260.62589 * 25 9 7 39 39 H 1.08998 * 109.48149 * 20.66015 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4237 2.0891 1.3974 5 1 1.4864 2.6302 -0.7726 6 1 3.5827 1.4200 -0.6248 7 6 2.0102 -1.2021 -0.0005 8 1 1.5575 -2.0868 -0.4233 9 7 3.2689 -1.2662 0.5349 10 6 4.1609 -2.2980 0.0898 11 6 3.8973 -3.5521 0.9402 12 6 4.5223 -3.4541 2.2686 13 7 4.0158 -2.2623 2.9897 14 6 3.0887 -2.4048 3.9575 15 8 2.7481 -3.5170 4.3149 16 6 2.4902 -1.2192 4.5797 17 6 1.6332 -1.2173 5.6429 18 6 1.3164 0.1252 5.9032 19 6 1.9792 0.8737 4.9941 20 6 1.9315 2.3765 4.8924 21 9 0.6138 2.7869 4.6635 22 9 2.3946 2.9396 6.0864 23 8 2.6853 0.0601 4.1985 24 6 4.5116 -0.9560 2.6577 25 6 3.6697 -0.2594 1.5554 26 1 -0.4851 -0.8368 0.0746 27 1 3.9738 -2.5191 -0.9610 28 1 5.1935 -1.9739 0.2199 29 1 2.8215 -3.6784 1.0624 30 1 4.3001 -4.4228 0.4229 31 1 4.2891 -4.3500 2.8439 32 1 5.6030 -3.3705 2.1535 33 1 1.2712 -2.0810 6.1806 34 1 0.6626 0.4907 6.6812 35 1 2.5629 2.7050 4.0669 36 1 4.5007 -0.3364 3.5545 37 1 5.5397 -1.0476 2.3073 38 1 4.2620 0.5231 1.0812 39 1 2.7779 0.1800 2.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989574544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:56 Heat of formation + Delta-G solvation = -74.377496 kcal Electronic energy + Delta-G solvation = -28207.917875 eV Core-core repulsion = 23982.740421 eV Total energy + Delta-G solvation = -4225.177454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.16035 -47.15361 -42.78395 -39.76328 -37.35121 -34.57760 -33.35338 -32.84413 -31.49274 -30.98941 -27.96096 -26.76652 -25.71096 -23.39704 -23.12393 -21.73949 -21.28922 -19.93131 -19.51999 -18.04223 -17.58555 -17.53685 -17.28815 -16.89407 -16.30002 -15.97922 -15.22599 -15.10730 -14.32246 -14.05713 -13.93169 -13.83012 -13.55952 -13.50822 -13.32846 -13.18606 -13.12428 -12.96388 -12.72878 -12.46039 -12.15589 -11.64603 -11.47251 -11.35389 -10.98126 -10.51895 -10.38114 -10.19191 -10.06193 -9.93578 -9.84638 -9.28109 -8.84289 -8.52041 -8.33423 -7.03365 -6.36282 -3.30583 0.96380 2.17288 2.26436 3.07881 3.27756 3.37133 3.46929 3.61601 3.81670 4.04343 4.47598 4.55921 4.72864 4.82781 4.83610 4.87278 5.18943 5.32133 5.37203 5.47157 5.54523 5.55687 5.69326 5.72535 5.73796 5.83691 6.02092 6.19797 6.22462 6.25271 6.38346 6.52946 6.61850 6.66020 6.81653 6.98850 7.54642 8.02763 8.19619 8.42015 8.99802 9.63516 10.10397 11.07567 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.007729 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.457750 B = 3621.911888 C = 5098.983303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.007 4.007 3 Si 1.046 2.954 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.286 1.286 7 C -0.353 4.353 8 H 0.067 0.933 9 N -0.598 5.598 10 C 0.161 3.839 11 C -0.171 4.171 12 C 0.130 3.870 13 N -0.574 5.574 14 C 0.606 3.394 15 O -0.528 6.528 16 C -0.030 4.030 17 C -0.134 4.134 18 C -0.159 4.159 19 C -0.083 4.083 20 C 0.357 3.643 21 F -0.179 7.179 22 F -0.187 7.187 23 O -0.131 6.131 24 C 0.087 3.913 25 C 0.108 3.892 26 H 0.265 0.735 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 1.302 10.047 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.210 4.210 3 Si 0.877 3.123 4 H -0.227 1.227 5 H -0.226 1.226 6 H -0.213 1.213 7 C -0.481 4.481 8 H 0.085 0.915 9 N -0.321 5.321 10 C 0.033 3.967 11 C -0.212 4.212 12 C 0.009 3.991 13 N -0.303 5.303 14 C 0.393 3.607 15 O -0.407 6.407 16 C -0.083 4.083 17 C -0.155 4.155 18 C -0.179 4.179 19 C -0.136 4.136 20 C 0.303 3.697 21 F -0.160 7.160 22 F -0.168 7.168 23 O -0.026 6.026 24 C -0.038 4.038 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.564 2.450 9.882 13.969 hybrid contribution -0.162 -1.519 0.159 1.536 sum 9.403 0.931 10.041 13.787 Atomic orbital electron populations 1.70839 1.06522 1.29646 1.47715 1.26051 0.96305 1.00683 0.97912 0.84120 0.75186 0.77216 0.75761 1.22693 1.22552 1.21283 1.20171 0.91141 0.96662 1.40127 0.91517 1.43948 1.13103 1.32231 1.42768 1.20348 0.92417 0.87831 0.96154 1.21849 1.02686 1.00637 0.96020 1.20702 0.97458 0.87445 0.93471 1.47273 1.40119 1.08427 1.34509 1.16549 0.78930 0.85673 0.79544 1.90825 1.62207 1.23591 1.64043 1.22295 1.04362 0.82255 0.99415 1.21909 0.98186 0.97980 0.97399 1.21607 1.02401 0.92651 1.01221 1.22861 1.01408 0.93392 0.95919 1.19115 0.80706 0.83880 0.85970 1.93091 1.37805 1.90514 1.94584 1.93045 1.88461 1.85416 1.49879 1.84279 1.54770 1.15792 1.47783 1.22092 0.98331 0.83695 0.99718 1.22634 0.98347 0.91810 0.89025 0.92493 0.92892 0.94632 0.91071 0.91987 0.89789 0.91380 0.81730 0.82163 0.84904 0.90336 0.90770 0.94598 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.94 13.70 55.49 0.76 -27.18 16 2 C -0.01 -0.21 5.05 -17.43 -0.09 -0.29 16 3 Si 1.05 25.30 24.51 -169.99 -4.17 21.13 16 4 H -0.30 -6.53 6.74 56.52 0.38 -6.15 16 5 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -6.56 6.76 56.52 0.38 -6.18 16 7 C -0.35 -9.67 9.51 -15.06 -0.14 -9.82 16 8 H 0.07 1.99 8.06 -52.49 -0.42 1.57 16 9 N -0.60 -13.63 2.32 -171.78 -0.40 -14.03 16 10 C 0.16 3.03 5.63 -5.23 -0.03 3.00 16 11 C -0.17 -2.92 5.64 -29.13 -0.16 -3.09 16 12 C 0.13 2.01 5.73 -5.91 -0.03 1.97 16 13 N -0.57 -9.99 2.46 -177.99 -0.44 -10.43 16 14 C 0.61 11.55 7.62 -12.86 -0.10 11.45 16 15 O -0.53 -10.96 16.30 5.20 0.08 -10.88 16 16 C -0.03 -0.54 6.66 -36.80 -0.24 -0.78 16 17 C -0.13 -2.11 10.63 -39.39 -0.42 -2.53 16 18 C -0.16 -2.31 10.77 -39.89 -0.43 -2.74 16 19 C -0.08 -1.29 6.75 -35.41 -0.24 -1.53 16 20 C 0.36 4.79 5.76 36.00 0.21 5.00 16 21 F -0.18 -2.75 17.32 2.25 0.04 -2.71 16 22 F -0.19 -2.33 17.32 2.25 0.04 -2.29 16 23 O -0.13 -2.27 5.73 5.01 0.03 -2.24 16 24 C 0.09 1.42 4.76 -4.40 -0.02 1.40 16 25 C 0.11 2.20 4.34 -1.57 -0.01 2.19 16 26 H 0.27 8.20 8.73 -40.82 -0.36 7.85 16 27 H 0.05 1.03 8.02 -51.93 -0.42 0.62 16 28 H 0.04 0.58 7.59 -51.93 -0.39 0.19 16 29 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.31 7.08 -51.93 -0.37 0.94 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.17 5.63 -51.93 -0.29 0.88 16 37 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 38 H 0.04 0.71 6.09 -51.93 -0.32 0.39 16 39 H 0.08 1.78 3.95 -51.93 -0.20 1.57 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -32.46 320.35 -5.46 -37.92 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.53 Total: 1.66 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.71 Total: 4.23 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.08 Total: -51.64 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.11 Total: -13.12 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.08 Total: -5.00 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.17 Total: 21.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.46 -5.46 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989574544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.460 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds