Wall clock time and date at job start Fri Apr 10 2020 22:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99975 * 2 1 4 4 H 1.48496 * 109.47170 * 269.99718 * 3 2 1 5 5 H 1.48502 * 109.46994 * 29.99516 * 3 2 1 6 6 H 1.48504 * 109.47234 * 149.99603 * 3 2 1 7 7 C 1.38811 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00522 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00439 * 179.97438 * 9 7 2 11 11 C 1.53349 * 109.41867 * 275.13222 * 10 9 7 12 12 C 1.53198 * 109.14877 * 178.67349 * 11 10 9 13 13 N 1.46927 * 108.89431 * 54.57371 * 12 11 10 14 14 C 1.34770 * 120.62879 * 126.34415 * 13 12 11 15 15 O 1.21610 * 120.00357 * 353.70043 * 14 13 12 16 16 C 1.47382 * 119.99880 * 173.70006 * 14 13 12 17 17 C 1.36414 * 127.19271 * 152.82208 * 16 14 13 18 18 O 1.33652 * 108.39850 * 179.89419 * 17 16 14 19 19 C 1.34223 * 110.90625 * 0.39088 * 18 17 16 20 20 C 1.50693 * 125.43488 * 179.76160 * 19 18 17 21 21 F 1.39900 * 109.47508 * 30.00424 * 20 19 18 22 22 F 1.39902 * 109.47053 * 150.00093 * 20 19 18 23 23 C 1.34178 * 109.12369 * 359.76084 * 19 18 17 24 24 C 1.46930 * 118.73682 * 306.32368 * 13 12 11 25 25 C 1.53039 * 109.46297 * 154.99930 * 10 9 7 26 26 H 0.96999 * 120.00430 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00049 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.45771 * 35.02670 * 10 9 7 29 29 H 1.08993 * 109.68771 * 58.70457 * 11 10 9 30 30 H 1.08997 * 109.47136 * 298.50646 * 11 10 9 31 31 H 1.08999 * 109.58174 * 294.71621 * 12 11 10 32 32 H 1.09002 * 109.58604 * 174.43400 * 12 11 10 33 33 H 1.07998 * 125.80044 * 0.02562 * 17 16 14 34 34 H 1.08998 * 109.47566 * 269.99612 * 20 19 18 35 35 H 1.08002 * 127.01876 * 179.97438 * 23 19 18 36 36 H 1.08996 * 109.58518 * 173.39993 * 24 13 12 37 37 H 1.09002 * 109.58462 * 293.67620 * 24 13 12 38 38 H 1.09002 * 109.49610 * 61.43611 * 25 10 9 39 39 H 1.09001 * 109.49396 * 301.34006 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.4250 -4.0336 -1.4399 12 6 3.2191 -5.3437 -1.4299 13 7 2.4415 -6.3659 -0.7163 14 6 2.1736 -7.5531 -1.2952 15 8 2.4757 -7.7449 -2.4574 16 6 1.5144 -8.6190 -0.5196 17 6 0.7296 -9.6251 -1.0022 18 8 0.3305 -10.3792 0.0265 19 6 0.8161 -9.9053 1.1846 20 6 0.5659 -10.5011 2.5459 21 9 0.3805 -11.8824 2.4236 22 9 1.6650 -10.2497 3.3742 23 6 1.5600 -8.8165 0.9366 24 6 1.9619 -6.0694 0.6405 25 6 1.1804 -4.7522 0.6104 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.9685 -3.5505 0.5905 29 1 3.0316 -3.2439 -1.8829 30 1 1.5144 -4.1647 -2.0244 31 1 4.1718 -5.1895 -0.9232 32 1 3.3985 -5.6701 -2.4543 33 1 0.4759 -9.7861 -2.0395 34 1 -0.3269 -10.0518 2.9807 35 1 2.0847 -8.2091 1.6592 36 1 1.3099 -6.8735 0.9814 37 1 2.8121 -5.9770 1.3164 38 1 0.2814 -4.8763 0.0066 39 1 0.9013 -4.4714 1.6259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996919623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:57 Heat of formation + Delta-G solvation = -118.268781 kcal Electronic energy + Delta-G solvation = -25985.307323 eV Core-core repulsion = 21758.226600 eV Total energy + Delta-G solvation = -4227.080723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.09850 -48.13715 -43.79645 -41.06523 -38.71627 -36.22149 -34.57901 -33.63954 -32.35776 -31.85534 -30.98441 -27.16950 -26.73667 -25.36851 -24.30299 -23.47635 -22.43089 -21.34815 -20.38545 -19.33967 -18.75331 -18.63478 -18.28271 -17.70087 -17.26813 -17.08871 -16.68686 -16.65562 -16.15319 -15.50179 -15.39922 -15.16716 -14.96989 -14.71238 -14.54890 -14.44209 -14.35518 -14.00201 -13.90161 -13.60505 -13.18878 -13.07478 -12.84581 -12.60894 -12.50436 -12.22718 -12.16478 -11.96860 -11.68631 -11.48159 -11.24282 -10.91321 -10.76251 -10.04316 -9.69571 -9.00703 -7.93622 -5.21970 0.21628 0.63383 1.34572 1.48189 1.49242 1.57376 1.85252 2.08980 2.56662 2.71971 3.09763 3.39375 3.43620 3.64726 3.80352 3.81941 3.85862 3.89415 3.95430 4.12587 4.15398 4.34164 4.38333 4.45747 4.59316 4.73898 4.76812 4.81364 4.84671 4.94504 4.98659 5.10745 5.29278 5.48109 5.53652 5.57046 5.72569 6.28494 6.33266 7.01591 7.34847 8.10797 8.33300 9.29886 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.002850 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.077446 B = 9821.429132 C =10559.554879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.172 3.828 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.598 5.598 14 C 0.586 3.414 15 O -0.584 6.584 16 C -0.261 4.261 17 C 0.079 3.921 18 O -0.158 6.158 19 C -0.102 4.102 20 C 0.364 3.636 21 F -0.204 7.204 22 F -0.190 7.190 23 C -0.137 4.137 24 C 0.103 3.897 25 C -0.130 4.130 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -23.612 5.985 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.064 3.936 11 C -0.179 4.179 12 C -0.001 4.001 13 N -0.329 5.329 14 C 0.377 3.623 15 O -0.466 6.466 16 C -0.265 4.265 17 C 0.008 3.992 18 O -0.053 6.053 19 C -0.152 4.152 20 C 0.311 3.689 21 F -0.185 7.185 22 F -0.171 7.171 23 C -0.156 4.156 24 C -0.019 4.019 25 C -0.169 4.169 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.261 0.739 34 H 0.204 0.796 35 H 0.207 0.793 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.463 -23.847 5.458 24.508 hybrid contribution 0.139 1.515 -0.520 1.608 sum 1.603 -22.332 4.939 22.928 Atomic orbital electron populations 1.69807 1.06597 1.25926 1.59816 1.25520 0.96308 1.00982 1.04048 0.85203 0.77874 0.79845 0.77237 1.21859 1.22390 1.19202 1.19622 0.91454 0.85176 1.40528 0.90488 1.42653 1.05421 1.01014 1.88532 1.20503 0.94731 0.85060 0.93320 1.22505 0.99351 0.95966 1.00088 1.21578 0.94095 0.86423 0.98040 1.48010 1.53253 1.14005 1.17599 1.17546 0.77678 0.81814 0.85268 1.90765 1.55794 1.81995 1.18053 1.21351 1.09359 1.01421 0.94418 1.24986 0.93399 0.87841 0.92933 1.83801 1.59565 1.47920 1.14020 1.23047 1.04991 0.98900 0.88227 1.20096 0.89681 0.76720 0.82426 1.93032 1.95571 1.33477 1.96394 1.93063 1.58221 1.93872 1.71975 1.23046 1.00524 0.97873 0.94119 1.22389 0.99831 0.97566 0.82117 1.22088 0.98423 0.94382 1.01964 0.94146 0.79720 0.92954 0.92204 0.94300 0.89570 0.90336 0.73924 0.79633 0.79303 0.86511 0.88751 0.92974 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -12.68 9.93 84.03 0.83 -11.85 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -35.72 5.12 -322.32 -1.65 -37.37 16 10 C 0.17 6.27 2.73 45.12 0.12 6.39 16 11 C -0.14 -4.81 5.69 30.78 0.18 -4.64 16 12 C 0.12 3.46 6.43 86.36 0.56 4.01 16 13 N -0.60 -15.53 2.97 -822.83 -2.45 -17.98 16 14 C 0.59 16.19 7.65 86.65 0.66 16.86 16 15 O -0.58 -20.11 16.44 -4.06 -0.07 -20.18 16 16 C -0.26 -5.44 5.73 -18.99 -0.11 -5.55 16 17 C 0.08 1.35 12.00 67.39 0.81 2.16 16 18 O -0.16 -2.60 10.50 4.40 0.05 -2.55 16 19 C -0.10 -1.47 6.90 24.76 0.17 -1.30 16 20 C 0.36 3.57 5.82 71.23 0.41 3.99 16 21 F -0.20 -2.98 17.30 44.97 0.78 -2.20 16 22 F -0.19 -2.43 17.01 44.97 0.76 -1.66 16 23 C -0.14 -2.14 8.19 23.65 0.19 -1.95 16 24 C 0.10 2.15 5.29 86.36 0.46 2.61 16 25 C -0.13 -3.67 5.55 30.67 0.17 -3.50 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 28 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 33 H 0.24 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.19 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.19 2.23 6.51 -2.91 -0.02 2.21 16 36 H 0.12 1.92 4.01 -2.39 -0.01 1.91 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -72.44 335.27 5.04 -67.40 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.38 Total: 22.08 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.92 Total: 3.38 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.81 Total: -113.73 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.02 Total: -22.73 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.86 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.44 5.04 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996919623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.869 kcal (2) G-P(sol) polarization free energy of solvation -72.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds