Wall clock time and date at job start Fri Apr 10 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99843 * 2 1 4 4 H 1.48499 * 109.46839 * 240.00058 * 3 2 1 5 5 H 1.48494 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46828 * 120.00556 * 3 2 1 7 7 C 1.38807 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00197 * 197.35105 * 7 2 1 9 9 N 1.36942 * 120.00152 * 17.34981 * 7 2 1 10 10 C 1.46926 * 120.62717 * 27.69961 * 9 7 2 11 11 C 1.53194 * 108.77371 * 126.37047 * 10 9 7 12 12 C 1.53039 * 109.33777 * 54.62141 * 11 10 9 13 13 C 1.53043 * 109.53755 * 298.68016 * 12 11 10 14 14 H 1.09006 * 109.49645 * 301.35133 * 13 12 11 15 15 N 1.46497 * 109.49897 * 181.29001 * 13 12 11 16 16 C 1.34773 * 120.00242 * 155.06541 * 15 13 12 17 17 O 1.21614 * 119.99930 * 359.97438 * 16 15 13 18 18 C 1.47374 * 120.00156 * 179.97438 * 16 15 13 19 19 C 1.36423 * 127.19324 * 0.02987 * 18 16 15 20 20 O 1.33652 * 108.39885 * 179.97438 * 19 18 16 21 21 C 1.34210 * 110.90630 * 359.97438 * 20 19 18 22 22 C 1.50708 * 125.43681 * 180.02562 * 21 20 19 23 23 F 1.39894 * 109.47197 * 120.02346 * 22 21 20 24 24 F 1.39902 * 109.47151 * 240.02358 * 22 21 20 25 25 C 1.34177 * 109.12988 * 0.26225 * 21 20 19 26 26 C 1.46922 * 120.63219 * 207.67645 * 9 7 2 27 27 H 0.97002 * 119.99838 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58688 * 246.16012 * 10 9 7 29 29 H 1.09002 * 109.59047 * 6.58352 * 10 9 7 30 30 H 1.09003 * 109.49356 * 174.58084 * 11 10 9 31 31 H 1.08999 * 109.49736 * 294.64782 * 11 10 9 32 32 H 1.09005 * 109.48519 * 178.64572 * 12 11 10 33 33 H 1.08997 * 109.43686 * 58.68479 * 12 11 10 34 34 H 0.97003 * 119.99659 * 335.06142 * 15 13 12 35 35 H 1.08004 * 125.79841 * 359.97438 * 19 18 16 36 36 H 1.09001 * 109.46764 * 0.02562 * 22 21 20 37 37 H 1.08004 * 127.02768 * 179.69976 * 25 21 20 38 38 H 1.09003 * 109.58523 * 113.83975 * 26 9 7 39 39 H 1.08993 * 109.70376 * 353.48976 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3547 10 6 0.2280 -2.3340 -1.2759 11 6 0.5015 -3.3031 -2.4303 12 6 0.8200 -4.6888 -1.8641 13 6 2.0750 -4.6091 -0.9919 14 1 2.9093 -4.2388 -1.5877 15 7 2.3968 -5.9417 -0.4752 16 6 3.6634 -6.2410 -0.1252 17 8 4.5393 -5.4049 -0.2386 18 6 3.9871 -7.5813 0.3951 19 6 3.1267 -8.6235 0.5812 20 8 3.8173 -9.6587 1.0690 21 6 5.1136 -9.3434 1.2151 22 6 6.1838 -10.2665 1.7383 23 9 7.1716 -10.4358 0.7623 24 9 6.7553 -9.7130 2.8891 25 6 5.3038 -8.0734 0.8259 26 6 1.8195 -3.6548 0.1788 27 1 -0.4850 0.8401 0.0004 28 1 -0.6742 -2.6410 -0.7469 29 1 0.0985 -1.3254 -1.6684 30 1 -0.3792 -3.3651 -3.0696 31 1 1.3497 -2.9444 -3.0133 32 1 0.9914 -5.3861 -2.6842 33 1 -0.0194 -5.0362 -1.2618 34 1 1.6982 -6.6086 -0.3851 35 1 2.0675 -8.6138 0.3703 36 1 5.7429 -11.2334 1.9806 37 1 6.2343 -7.5251 0.8276 38 1 1.0470 -4.0696 0.8265 39 1 2.7393 -3.5196 0.7476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008318399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:09 Heat of formation + Delta-G solvation = -98.203776 kcal Electronic energy + Delta-G solvation = -25701.717079 eV Core-core repulsion = 21475.506440 eV Total energy + Delta-G solvation = -4226.210639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.52631 -47.53139 -43.01397 -39.53435 -37.32749 -34.39344 -33.36461 -32.51354 -31.51315 -30.47811 -28.72187 -26.37242 -25.29976 -24.20569 -22.16289 -21.77095 -21.54181 -20.09451 -19.56179 -18.57097 -17.89114 -17.71891 -16.83178 -16.62442 -16.42163 -16.09170 -15.62448 -14.79804 -14.67185 -14.38534 -14.04620 -13.88008 -13.87821 -13.51633 -13.46057 -13.41761 -13.12154 -13.01848 -12.43070 -12.39373 -11.88534 -11.73716 -11.12059 -10.92615 -10.78483 -10.29396 -10.26511 -10.20630 -10.08417 -9.91759 -9.67371 -9.63038 -9.35185 -8.88790 -8.40869 -6.68437 -5.78584 -3.20690 0.91209 1.49915 1.91518 3.11546 3.35091 3.42001 3.44346 3.46343 3.49846 3.67321 4.09482 4.31092 4.43405 4.51403 4.53969 5.03355 5.15736 5.25582 5.35579 5.39657 5.50986 5.59686 5.67298 5.79906 6.04197 6.10770 6.19858 6.39134 6.48552 6.58061 6.61134 6.66167 6.80897 6.95339 7.34078 7.63082 7.63668 7.83288 8.32801 8.46161 9.22054 9.84167 10.39432 11.30217 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002741 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.529076 B =10211.427058 C =11008.506971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.088 0.912 15 N -0.717 5.717 16 C 0.580 3.420 17 O -0.526 6.526 18 C -0.227 4.227 19 C 0.043 3.957 20 O -0.159 6.159 21 C -0.115 4.115 22 C 0.364 3.636 23 F -0.184 7.184 24 F -0.184 7.184 25 C -0.094 4.094 26 C 0.142 3.858 27 H 0.254 0.746 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.391 0.609 35 H 0.222 0.778 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.017 0.983 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -23.399 0.163 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.106 0.894 15 N -0.367 5.367 16 C 0.366 3.634 17 O -0.402 6.402 18 C -0.231 4.231 19 C -0.028 4.028 20 O -0.055 6.055 21 C -0.163 4.163 22 C 0.310 3.690 23 F -0.165 7.165 24 F -0.165 7.165 25 C -0.114 4.114 26 C 0.014 3.986 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.238 0.762 36 H 0.150 0.850 37 H 0.185 0.815 38 H 0.035 0.965 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.855 -22.872 0.177 23.382 hybrid contribution 0.089 0.761 0.015 0.767 sum 4.944 -22.111 0.192 22.657 Atomic orbital electron populations 1.70030 1.05245 1.25632 1.53992 1.25018 0.95300 0.98408 1.00827 0.86343 0.78905 0.83122 0.78285 1.20936 1.21633 1.20821 1.19195 0.92844 0.84706 1.41421 0.91557 1.43991 1.35622 1.01002 1.50382 1.20855 0.88555 0.98638 0.87844 1.22184 1.00505 0.95096 1.00171 1.21681 0.96613 0.98731 0.98226 1.21812 0.97995 0.80785 0.97293 0.89372 1.45988 1.08517 1.16070 1.66143 1.17148 0.83002 0.85359 0.77854 1.90844 1.46966 1.48968 1.53456 1.21724 0.94151 0.96442 1.10800 1.24642 0.97747 0.84192 0.96211 1.83652 1.18201 1.38781 1.64854 1.22345 0.84406 0.97045 1.12550 1.19006 0.80346 0.95357 0.74295 1.93079 1.63859 1.95990 1.63617 1.93087 1.85901 1.87994 1.49481 1.22711 0.98603 0.92902 0.97184 1.21174 0.98000 0.86849 0.92531 0.93597 0.96282 0.89198 0.92646 0.92362 0.93033 0.92210 0.77536 0.76219 0.84992 0.81500 0.96485 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.26 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.47 16 9 N -0.59 -14.88 2.99 -172.33 -0.52 -15.40 16 10 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.11 -1.76 5.36 -26.69 -0.14 -1.90 16 13 C 0.13 2.21 2.60 -67.81 -0.18 2.03 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -9.79 5.07 -54.78 -0.28 -10.07 16 16 C 0.58 8.99 7.78 -12.54 -0.10 8.89 16 17 O -0.53 -10.67 16.65 5.27 0.09 -10.58 16 18 C -0.23 -2.72 6.31 -103.27 -0.65 -3.37 16 19 C 0.04 0.35 11.61 30.08 0.35 0.69 16 20 O -0.16 -1.36 10.52 7.67 0.08 -1.28 16 21 C -0.11 -1.08 6.72 -35.74 -0.24 -1.32 16 22 C 0.36 2.63 5.75 36.01 0.21 2.83 16 23 F -0.18 -1.62 17.32 2.25 0.04 -1.59 16 24 F -0.18 -1.66 17.32 2.25 0.04 -1.63 16 25 C -0.09 -1.11 10.90 -37.45 -0.41 -1.52 16 26 C 0.14 3.07 6.09 -3.72 -0.02 3.05 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.39 3.72 7.57 -40.82 -0.31 3.41 16 35 H 0.22 0.79 7.47 -52.48 -0.39 0.40 16 36 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.37 7.94 -51.93 -0.41 0.96 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -34.24 338.83 -6.20 -40.44 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.75 Total: 0.24 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.59 Total: 3.29 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.17 Total: -51.10 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.17 Total: -11.86 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.24 -6.20 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008318399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.763 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds