Wall clock time and date at job start Fri Apr 10 2020 22:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86790 * 120.00315 * 2 1 4 4 H 1.48502 * 109.47291 * 272.90002 * 3 2 1 5 5 H 1.48503 * 109.47233 * 32.89938 * 3 2 1 6 6 H 1.48501 * 109.47206 * 152.90303 * 3 2 1 7 7 C 1.38816 * 119.99389 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00429 * 339.36892 * 7 2 1 9 9 N 1.36940 * 119.99516 * 159.36389 * 7 2 1 10 10 C 1.46933 * 120.63035 * 332.60041 * 9 7 2 11 11 C 1.53195 * 108.77463 * 233.63393 * 10 9 7 12 12 C 1.53045 * 109.31291 * 305.36352 * 11 10 9 13 13 C 1.53042 * 109.53560 * 61.36622 * 12 11 10 14 14 H 1.08995 * 109.52373 * 58.60105 * 13 12 11 15 15 N 1.46500 * 109.49447 * 178.68497 * 13 12 11 16 16 C 1.34785 * 119.99479 * 204.56252 * 15 13 12 17 17 O 1.21690 * 120.00245 * 0.27598 * 16 15 13 18 18 C 1.46659 * 119.99657 * 180.27336 * 16 15 13 19 19 C 1.36540 * 125.98596 * 179.71147 * 18 16 15 20 20 C 1.40368 * 106.70496 * 179.91051 * 19 18 16 21 21 C 1.35126 * 107.11693 * 0.35874 * 20 19 18 22 22 C 1.50703 * 125.61699 * 179.77599 * 21 20 19 23 23 F 1.39900 * 109.47163 * 210.02057 * 22 21 20 24 24 F 1.39893 * 109.47056 * 330.02892 * 22 21 20 25 25 O 1.33928 * 108.76532 * 359.77704 * 21 20 19 26 26 C 1.46925 * 120.63061 * 152.62623 * 9 7 2 27 27 H 0.97000 * 120.00055 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.58658 * 353.41575 * 10 9 7 29 29 H 1.08997 * 109.58466 * 113.70345 * 10 9 7 30 30 H 1.09004 * 109.50133 * 65.31659 * 11 10 9 31 31 H 1.08999 * 109.49679 * 185.41644 * 11 10 9 32 32 H 1.09003 * 109.45764 * 301.34585 * 12 11 10 33 33 H 1.08991 * 109.46051 * 181.38731 * 12 11 10 34 34 H 0.96992 * 120.00547 * 24.83938 * 15 13 12 35 35 H 1.07996 * 126.64903 * 0.04691 * 19 18 16 36 36 H 1.08003 * 126.43794 * 180.11536 * 20 19 18 37 37 H 1.09007 * 109.46931 * 90.02389 * 22 21 20 38 38 H 1.08993 * 109.58533 * 6.57921 * 26 9 7 39 39 H 1.09001 * 109.58183 * 246.15384 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4364 2.0817 -1.3983 5 1 1.4797 2.6341 0.7605 6 1 3.5771 1.4230 0.6377 7 6 2.0101 -1.2023 0.0005 8 1 1.5221 -2.1074 0.3305 9 7 3.3136 -1.2405 -0.4174 10 6 3.8175 -0.2598 -1.3886 11 6 4.4617 -1.0105 -2.5584 12 6 5.5283 -1.9669 -2.0200 13 6 4.8744 -2.9915 -1.0901 14 1 4.1076 -3.5414 -1.6356 15 7 5.8909 -3.9257 -0.6000 16 6 5.5323 -5.1604 -0.1953 17 8 4.3649 -5.5008 -0.2417 18 6 6.5490 -6.0935 0.3009 19 6 6.3229 -7.3648 0.7447 20 6 7.5700 -7.8894 1.1188 21 6 8.4899 -6.9248 0.8972 22 6 9.9687 -7.0450 1.1612 23 9 10.4890 -5.7866 1.4821 24 9 10.1819 -7.9239 2.2286 25 8 7.8709 -5.8442 0.4044 26 6 4.2348 -2.2634 0.0963 27 1 -0.4850 0.8400 -0.0004 28 1 2.9909 0.3487 -1.7558 29 1 4.5584 0.3807 -0.9103 30 1 3.6987 -1.5787 -3.0905 31 1 4.9243 -0.2956 -3.2388 32 1 6.2778 -1.4008 -1.4670 33 1 6.0054 -2.4844 -2.8522 34 1 6.8214 -3.6545 -0.5630 35 1 5.3696 -7.8698 0.7959 36 1 7.7582 -8.8770 1.5135 37 1 10.4669 -7.4278 0.2704 38 1 3.6837 -2.9768 0.7089 39 1 5.0116 -1.7878 0.6951 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009366526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:13 Heat of formation + Delta-G solvation = -91.550346 kcal Electronic energy + Delta-G solvation = -25953.633648 eV Core-core repulsion = 21727.711523 eV Total energy + Delta-G solvation = -4225.922125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.60869 -47.63329 -43.13714 -39.73173 -37.68853 -34.69586 -33.61058 -32.58614 -31.59491 -30.87037 -29.42922 -26.83085 -25.34447 -23.58091 -22.20151 -22.04423 -21.87433 -20.41526 -19.84741 -18.77291 -18.27229 -17.63935 -17.53667 -16.85692 -16.55487 -15.90744 -15.36877 -14.83887 -14.66028 -14.46245 -14.18324 -13.98427 -13.96636 -13.80164 -13.47763 -13.41412 -13.28369 -13.23917 -12.91975 -12.40969 -12.13480 -12.01096 -11.56732 -11.24177 -10.97166 -10.80263 -10.50490 -10.34190 -10.20369 -9.97251 -9.76018 -9.48652 -9.26882 -9.06492 -8.56278 -6.99644 -5.93592 -3.30676 0.56409 1.77630 1.88186 2.93957 3.05525 3.28331 3.31140 3.48288 3.50969 3.56979 4.12687 4.23021 4.43572 4.53003 4.61196 4.98289 5.07741 5.14314 5.21906 5.23554 5.37434 5.41459 5.47988 5.74983 5.85889 5.87607 5.97808 6.13411 6.26445 6.28361 6.35992 6.39861 6.56611 6.61986 6.70152 6.88271 7.43505 7.94710 8.05179 8.34708 8.94202 9.71989 10.07145 11.22283 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.002892 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.779535 B = 9680.170439 C =10012.813313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.095 0.905 15 N -0.708 5.708 16 C 0.596 3.404 17 O -0.504 6.504 18 C -0.040 4.040 19 C -0.130 4.130 20 C -0.164 4.164 21 C -0.084 4.084 22 C 0.364 3.636 23 F -0.189 7.189 24 F -0.183 7.183 25 O -0.143 6.143 26 C 0.143 3.857 27 H 0.263 0.737 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.401 0.599 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.278 -14.483 -1.796 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.113 0.887 15 N -0.358 5.358 16 C 0.380 3.620 17 O -0.380 6.380 18 C -0.093 4.093 19 C -0.150 4.150 20 C -0.183 4.183 21 C -0.137 4.137 22 C 0.310 3.690 23 F -0.170 7.170 24 F -0.164 7.164 25 O -0.039 6.039 26 C 0.016 3.984 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 21.392 -14.309 -1.861 25.803 hybrid contribution 0.883 0.973 0.267 1.341 sum 22.274 -13.336 -1.595 26.010 Atomic orbital electron populations 1.69842 1.05717 1.26540 1.52867 1.25266 0.95222 0.97525 0.99474 0.86948 0.80028 0.84678 0.76979 1.21581 1.23129 1.19625 1.18950 0.84715 0.94955 1.40228 0.89511 1.44289 1.08701 1.32717 1.46742 1.21421 0.97510 0.92106 0.89435 1.21997 0.97780 0.98317 0.98995 1.21686 0.98497 0.96960 0.98304 1.21861 0.89721 0.89389 0.97225 0.88679 1.46061 1.12136 1.13089 1.64526 1.16515 0.85963 0.81129 0.78372 1.90964 1.16239 1.76443 1.54321 1.22619 0.80766 0.97658 1.08294 1.22040 0.99892 0.93304 0.99766 1.21638 0.91456 1.01139 1.04084 1.23054 0.95524 0.87960 1.07195 1.19570 0.85688 0.75174 0.88570 1.93075 1.87605 1.42176 1.94119 1.93068 1.94871 1.68681 1.59765 1.84012 1.19462 1.36449 1.63952 1.21224 0.92829 0.91481 0.92879 0.92737 0.90665 0.95556 0.91279 0.92082 0.91915 0.92260 0.76451 0.81249 0.81690 0.84146 0.91279 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.13 13.97 55.49 0.78 -27.36 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.40 24.34 -169.99 -4.14 18.26 16 4 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.75 6.64 56.52 0.38 -6.37 16 7 C -0.26 -7.43 10.04 -15.06 -0.15 -7.58 16 8 H 0.09 2.69 8.05 -52.49 -0.42 2.26 16 9 N -0.60 -14.42 2.77 -172.31 -0.48 -14.90 16 10 C 0.12 2.58 4.21 -3.71 -0.02 2.56 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.12 -1.67 5.35 -26.69 -0.14 -1.81 16 13 C 0.12 2.04 2.60 -67.81 -0.18 1.86 16 14 H 0.10 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.71 -9.74 5.08 -55.00 -0.28 -10.02 16 16 C 0.60 8.96 7.75 -12.86 -0.10 8.86 16 17 O -0.50 -9.45 16.53 5.20 0.09 -9.36 16 18 C -0.04 -0.50 7.13 -36.80 -0.26 -0.76 16 19 C -0.13 -1.39 10.62 -39.39 -0.42 -1.81 16 20 C -0.16 -1.39 10.42 -39.89 -0.42 -1.81 16 21 C -0.08 -0.75 6.93 -35.41 -0.25 -0.99 16 22 C 0.36 2.28 5.82 36.01 0.21 2.49 16 23 F -0.19 -1.65 17.31 2.25 0.04 -1.61 16 24 F -0.18 -1.33 17.02 2.25 0.04 -1.29 16 25 O -0.14 -1.57 10.38 5.01 0.05 -1.51 16 26 C 0.14 2.92 6.09 -3.71 -0.02 2.90 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.08 1.77 4.50 -51.93 -0.23 1.53 16 29 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 4.44 8.36 -40.82 -0.34 4.09 16 35 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -33.77 332.80 -5.62 -39.40 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.74 Total: 1.22 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.99 Total: 2.16 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.02 Total: -52.28 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.14 Total: -10.88 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.77 -5.62 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009366526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.152 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds