Wall clock time and date at job start Fri Apr 10 2020 22:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09000 * 109.47571 * 301.37057 * 13 12 11 15 15 N 1.46494 * 109.52362 * 181.30001 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11585 * 15 13 12 17 17 O 1.21692 * 120.00102 * 0.02562 * 16 15 13 18 18 C 1.46660 * 119.99901 * 179.97438 * 16 15 13 19 19 C 1.36541 * 125.98711 * 179.71390 * 18 16 15 20 20 C 1.40364 * 106.70821 * 179.85371 * 19 18 16 21 21 C 1.35134 * 107.11676 * 0.40960 * 20 19 18 22 22 C 1.50698 * 125.62074 * 179.78051 * 21 20 19 23 23 F 1.39903 * 109.47195 * 209.98165 * 22 21 20 24 24 F 1.39895 * 109.46902 * 329.98476 * 22 21 20 25 25 O 1.33937 * 108.76252 * 359.74406 * 21 20 19 26 26 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 27 27 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 29 29 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 30 30 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 31 31 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 32 32 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 33 33 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 34 34 H 0.96994 * 120.00413 * 335.11412 * 15 13 12 35 35 H 1.08000 * 126.64585 * 359.96353 * 19 18 16 36 36 H 1.08003 * 126.44803 * 180.15531 * 20 19 18 37 37 H 1.09000 * 109.46718 * 89.98272 * 22 21 20 38 38 H 1.08993 * 109.59005 * 353.36718 * 26 9 7 39 39 H 1.09002 * 109.58930 * 113.80288 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5843 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5389 -5.4034 -0.2317 18 6 3.9854 -7.5737 0.4008 19 6 5.2215 -8.0073 0.7860 20 6 5.0676 -9.3347 1.2159 21 6 3.7625 -9.6521 1.0674 22 6 3.1396 -10.9832 1.4006 23 9 2.0486 -11.2122 0.5553 24 9 4.0865 -11.9980 1.2254 25 8 3.1137 -8.5884 0.5760 26 6 1.8191 -3.6546 0.1822 27 1 -0.4851 0.8401 -0.0004 28 1 0.0984 -1.3268 -1.6673 29 1 -0.6758 -2.6397 -0.7456 30 1 -0.3803 -3.3680 -3.0661 31 1 1.3488 -2.9479 -3.0106 32 1 -0.0202 -5.0374 -1.2560 33 1 0.9894 -5.3887 -2.6790 34 1 1.6980 -6.6094 -0.3788 35 1 6.1394 -7.4386 0.7657 36 1 5.8466 -9.9821 1.5906 37 1 2.8014 -10.9768 2.4368 38 1 2.7399 -3.5171 0.7490 39 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009366527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:15 Heat of formation + Delta-G solvation = -98.020028 kcal Electronic energy + Delta-G solvation = -25865.465449 eV Core-core repulsion = 21639.262778 eV Total energy + Delta-G solvation = -4226.202671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.58513 -47.60840 -43.09916 -39.62667 -37.40137 -34.54646 -33.57110 -32.50942 -31.51613 -30.49329 -28.94777 -26.70606 -25.30788 -23.31947 -22.18476 -22.09711 -21.54791 -20.34020 -19.58911 -18.66652 -18.23605 -17.60406 -17.47282 -16.81871 -16.50860 -15.77042 -14.87905 -14.74488 -14.54662 -14.40604 -14.16482 -13.96214 -13.90899 -13.48158 -13.45120 -13.37981 -13.24727 -13.11076 -12.44033 -12.42513 -11.99062 -11.86325 -11.14945 -10.94645 -10.80132 -10.47329 -10.35304 -10.29426 -10.26575 -9.93539 -9.71952 -9.68573 -9.19402 -8.91327 -8.42474 -6.69979 -5.79523 -3.21907 0.60460 1.81689 1.91200 3.01480 3.10430 3.32566 3.40888 3.45535 3.48466 3.60914 4.16285 4.26803 4.46534 4.50756 4.68164 5.17236 5.20423 5.27195 5.34929 5.43009 5.50594 5.57967 5.67080 5.88860 6.01652 6.06828 6.19851 6.32086 6.46485 6.55007 6.59180 6.65051 6.78896 6.91183 7.33520 7.52574 7.63204 7.81793 8.10675 8.44371 9.20658 9.82750 10.38212 11.29240 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002777 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.375984 B =10081.902021 C =10695.878524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.166 3.834 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.123 3.877 14 H 0.090 0.910 15 N -0.706 5.706 16 C 0.595 3.405 17 O -0.508 6.508 18 C -0.039 4.039 19 C -0.131 4.131 20 C -0.164 4.164 21 C -0.085 4.085 22 C 0.364 3.636 23 F -0.189 7.189 24 F -0.183 7.183 25 O -0.143 6.143 26 C 0.142 3.858 27 H 0.254 0.746 28 H 0.090 0.910 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.401 0.599 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.059 0.941 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -22.364 1.529 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.018 3.982 14 H 0.108 0.892 15 N -0.356 5.356 16 C 0.379 3.621 17 O -0.384 6.384 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.183 4.183 21 C -0.138 4.138 22 C 0.310 3.690 23 F -0.170 7.170 24 F -0.164 7.164 25 O -0.038 6.038 26 C 0.014 3.986 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.235 0.765 35 H 0.187 0.813 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.859 -21.569 1.352 22.151 hybrid contribution 0.244 0.315 0.031 0.400 sum 5.103 -21.254 1.384 21.902 Atomic orbital electron populations 1.70030 1.05255 1.25668 1.53863 1.25025 0.95300 0.98423 1.00797 0.86339 0.78898 0.83121 0.78260 1.20940 1.21633 1.20825 1.19185 0.92835 0.84654 1.41568 0.91527 1.43991 1.35610 1.00960 1.50383 1.20855 0.88558 0.98641 0.87872 1.22181 1.00562 0.94991 1.00155 1.21687 0.96566 0.98805 0.98288 1.21918 0.98277 0.80479 0.97480 0.89154 1.46115 1.08591 1.16480 1.64392 1.16517 0.83774 0.83281 0.78485 1.90942 1.47231 1.46169 1.54092 1.22656 0.89184 0.89443 1.07914 1.22023 0.98180 0.94893 1.00082 1.21629 0.95401 0.96920 1.04397 1.23048 0.93168 0.90385 1.07161 1.19576 0.75446 0.78975 0.95023 1.93072 1.54615 1.94987 1.74325 1.93064 1.65936 1.60571 1.96870 1.84022 1.37621 1.18786 1.63387 1.21184 0.98117 0.86875 0.92429 0.93566 0.89173 0.96228 0.92565 0.92328 0.92062 0.92909 0.76500 0.81311 0.81723 0.84080 0.92253 0.96310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.87 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 10 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.12 -1.84 5.36 -26.69 -0.14 -1.98 16 13 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.71 -10.42 5.08 -55.00 -0.28 -10.70 16 16 C 0.60 9.33 7.75 -12.86 -0.10 9.23 16 17 O -0.51 -9.74 16.53 5.20 0.09 -9.66 16 18 C -0.04 -0.50 7.13 -36.80 -0.26 -0.76 16 19 C -0.13 -1.46 10.62 -39.39 -0.42 -1.87 16 20 C -0.16 -1.45 10.42 -39.89 -0.42 -1.87 16 21 C -0.08 -0.78 6.93 -35.41 -0.25 -1.03 16 22 C 0.36 2.41 5.82 36.00 0.21 2.62 16 23 F -0.19 -1.70 17.31 2.25 0.04 -1.66 16 24 F -0.18 -1.36 17.02 2.25 0.04 -1.32 16 25 O -0.14 -1.64 10.38 4.98 0.05 -1.59 16 26 C 0.14 3.06 6.09 -3.71 -0.02 3.04 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 4.88 8.36 -40.82 -0.34 4.53 16 35 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -32.17 339.23 -6.68 -38.85 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.81 Total: 1.57 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.99 Total: 3.33 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.17 Total: -51.56 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.14 Total: -11.24 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.17 -6.68 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009366527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.174 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds