Wall clock time and date at job start Fri Apr 10 2020 22:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09000 * 109.47571 * 301.37057 * 13 12 11 15 15 N 1.46494 * 109.52362 * 181.30001 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11585 * 15 13 12 17 17 O 1.21692 * 120.00102 * 0.02562 * 16 15 13 18 18 C 1.46660 * 119.99901 * 179.97438 * 16 15 13 19 19 C 1.36541 * 125.98711 * 179.71390 * 18 16 15 20 20 C 1.40364 * 106.70821 * 179.85371 * 19 18 16 21 21 C 1.35134 * 107.11676 * 0.40960 * 20 19 18 22 22 C 1.50698 * 125.62074 * 179.78051 * 21 20 19 23 23 F 1.39903 * 109.47195 * 209.98165 * 22 21 20 24 24 F 1.39895 * 109.46902 * 329.98476 * 22 21 20 25 25 O 1.33937 * 108.76252 * 359.74406 * 21 20 19 26 26 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 27 27 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 29 29 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 30 30 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 31 31 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 32 32 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 33 33 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 34 34 H 0.96994 * 120.00413 * 335.11412 * 15 13 12 35 35 H 1.08000 * 126.64585 * 359.96353 * 19 18 16 36 36 H 1.08003 * 126.44803 * 180.15531 * 20 19 18 37 37 H 1.09000 * 109.46718 * 89.98272 * 22 21 20 38 38 H 1.08993 * 109.59005 * 353.36718 * 26 9 7 39 39 H 1.09002 * 109.58930 * 113.80288 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5843 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5389 -5.4034 -0.2317 18 6 3.9854 -7.5737 0.4008 19 6 5.2215 -8.0073 0.7860 20 6 5.0676 -9.3347 1.2159 21 6 3.7625 -9.6521 1.0674 22 6 3.1396 -10.9832 1.4006 23 9 2.0486 -11.2122 0.5553 24 9 4.0865 -11.9980 1.2254 25 8 3.1137 -8.5884 0.5760 26 6 1.8191 -3.6546 0.1822 27 1 -0.4851 0.8401 -0.0004 28 1 0.0984 -1.3268 -1.6673 29 1 -0.6758 -2.6397 -0.7456 30 1 -0.3803 -3.3680 -3.0661 31 1 1.3488 -2.9479 -3.0106 32 1 -0.0202 -5.0374 -1.2560 33 1 0.9894 -5.3887 -2.6790 34 1 1.6980 -6.6094 -0.3788 35 1 6.1394 -7.4386 0.7657 36 1 5.8466 -9.9821 1.5906 37 1 2.8014 -10.9768 2.4368 38 1 2.7399 -3.5171 0.7490 39 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009366527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:15 Heat of formation + Delta-G solvation = -119.072761 kcal Electronic energy + Delta-G solvation = -25866.378364 eV Core-core repulsion = 21639.262778 eV Total energy + Delta-G solvation = -4227.115586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.14423 -48.18029 -43.93608 -40.95603 -39.00696 -36.11033 -34.52120 -34.12420 -32.40886 -32.36573 -30.42849 -27.56561 -27.26571 -24.49155 -23.90647 -22.97832 -22.81644 -21.48900 -21.07674 -19.65650 -18.81040 -18.73816 -18.38642 -18.15173 -17.39157 -17.26027 -16.74830 -16.12293 -15.83600 -15.54670 -15.21158 -15.11095 -14.84220 -14.83763 -14.55267 -14.40578 -14.21000 -14.13978 -14.05512 -13.85383 -13.43997 -13.05033 -12.74237 -12.63905 -12.54663 -12.18236 -11.99530 -11.86453 -11.67324 -11.36652 -11.34351 -11.26450 -10.65139 -10.34493 -9.92269 -8.72434 -7.91861 -5.37511 -0.30627 1.01291 1.10850 1.44756 1.47086 1.54389 1.90274 1.97018 2.49253 2.66166 3.06039 3.22615 3.46721 3.68883 3.70006 3.78231 3.84690 3.91245 4.05524 4.20512 4.36790 4.40030 4.44141 4.51573 4.72547 4.77222 4.87181 4.97431 5.04419 5.09778 5.12845 5.22582 5.32471 5.49791 5.55535 5.61644 5.74779 6.33316 6.35826 6.92462 7.11379 7.80119 8.30272 9.13956 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002777 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.375984 B =10081.902021 C =10695.878524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.271 4.271 8 H 0.056 0.944 9 N -0.606 5.606 10 C 0.170 3.830 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.140 3.860 14 H 0.067 0.933 15 N -0.696 5.696 16 C 0.597 3.403 17 O -0.553 6.553 18 C -0.070 4.070 19 C -0.124 4.124 20 C -0.162 4.162 21 C -0.078 4.078 22 C 0.365 3.635 23 F -0.203 7.203 24 F -0.186 7.186 25 O -0.150 6.150 26 C 0.144 3.856 27 H 0.253 0.747 28 H 0.056 0.944 29 H 0.005 0.995 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.416 0.584 35 H 0.173 0.827 36 H 0.196 0.804 37 H 0.191 0.809 38 H 0.034 0.966 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 -24.888 1.574 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.401 4.401 8 H 0.073 0.927 9 N -0.330 5.330 10 C 0.045 3.955 11 C -0.168 4.168 12 C -0.144 4.144 13 C 0.034 3.966 14 H 0.085 0.915 15 N -0.346 5.346 16 C 0.383 3.617 17 O -0.433 6.433 18 C -0.123 4.123 19 C -0.145 4.145 20 C -0.181 4.181 21 C -0.131 4.131 22 C 0.312 3.688 23 F -0.184 7.184 24 F -0.167 7.167 25 O -0.045 6.045 26 C 0.017 3.983 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.191 0.809 36 H 0.213 0.787 37 H 0.207 0.793 38 H 0.053 0.947 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.006 -24.150 1.394 24.703 hybrid contribution 0.230 0.976 0.096 1.007 sum 5.235 -23.174 1.490 23.804 Atomic orbital electron populations 1.70163 1.06418 1.26145 1.54741 1.25733 0.96117 1.01261 1.00817 0.85364 0.77702 0.79234 0.78291 1.20486 1.21304 1.20381 1.19388 0.92713 0.86275 1.41695 0.92653 1.44218 1.36011 1.01452 1.51326 1.20738 0.87523 0.98274 0.88964 1.22012 1.01553 0.94954 0.98292 1.21628 0.95717 0.97948 0.99069 1.21433 0.98535 0.81006 0.95664 0.91507 1.45874 1.09057 1.15556 1.64096 1.16807 0.83278 0.84078 0.77516 1.90912 1.48390 1.48019 1.55987 1.22054 0.90128 0.89102 1.10985 1.22299 0.97673 0.95941 0.98541 1.21950 0.96080 0.96079 1.03949 1.23773 0.93546 0.90635 1.05118 1.20126 0.74699 0.77264 0.96729 1.93047 1.55279 1.94940 1.75117 1.93063 1.66154 1.60499 1.96992 1.83992 1.37641 1.19034 1.63875 1.21206 0.96716 0.86494 0.93858 0.93808 0.92541 0.97660 0.89585 0.93149 0.90586 0.89447 0.74654 0.80947 0.78681 0.79274 0.94741 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.19 21.65 0.24 -54.94 16 2 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 3 Si 0.97 46.07 29.59 68.60 2.03 48.10 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.27 -15.67 9.59 84.03 0.81 -14.87 16 8 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 9 N -0.61 -31.59 2.99 -699.10 -2.09 -33.69 16 10 C 0.17 8.12 5.31 86.36 0.46 8.58 16 11 C -0.13 -4.58 6.08 30.67 0.19 -4.40 16 12 C -0.11 -3.15 5.36 30.62 0.16 -2.99 16 13 C 0.14 4.94 2.60 45.07 0.12 5.05 16 14 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 15 N -0.70 -20.12 5.08 -446.13 -2.27 -22.39 16 16 C 0.60 18.86 7.75 86.44 0.67 19.53 16 17 O -0.55 -22.00 16.53 -4.32 -0.07 -22.07 16 18 C -0.07 -1.75 7.13 24.07 0.17 -1.58 16 19 C -0.12 -2.58 10.62 22.39 0.24 -2.35 16 20 C -0.16 -2.39 10.42 22.07 0.23 -2.16 16 21 C -0.08 -1.22 6.93 24.97 0.17 -1.04 16 22 C 0.37 3.55 5.82 71.24 0.41 3.96 16 23 F -0.20 -3.08 17.31 44.97 0.78 -2.31 16 24 F -0.19 -2.13 17.02 44.97 0.77 -1.36 16 25 O -0.15 -3.16 10.38 -5.10 -0.05 -3.21 16 26 C 0.14 6.40 6.09 86.37 0.53 6.93 16 27 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 28 H 0.06 3.06 6.04 -2.39 -0.01 3.04 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.42 9.45 8.36 -92.71 -0.77 8.68 16 35 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.19 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.03 1.66 7.93 -2.39 -0.02 1.64 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.07 339.23 4.22 -68.84 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.32 Total: 10.42 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.57 Total: 12.60 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.12 Total: -111.02 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.12 Total: -25.28 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.54 Total: -3.67 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.07 4.22 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009366527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.228 kcal (2) G-P(sol) polarization free energy of solvation -73.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds