Wall clock time and date at job start Fri Apr 10 2020 22:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40365 * 126.64088 * 2 1 4 4 C 1.35131 * 107.11171 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.61689 * 179.97438 * 4 3 2 6 6 F 1.39905 * 109.47265 * 210.00603 * 5 4 3 7 7 F 1.39900 * 109.46808 * 329.99774 * 5 4 3 8 8 O 1.33928 * 108.76865 * 0.02562 * 4 3 2 9 9 C 1.34913 * 109.38545 * 359.97438 * 8 4 3 10 10 C 1.46658 * 125.99027 * 179.97438 * 9 8 4 11 11 O 1.21687 * 120.00344 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99605 * 0.03237 * 10 9 8 13 13 C 1.47026 * 125.65063 * 359.68296 * 12 10 9 14 14 C 1.54337 * 107.26282 * 178.85343 * 13 12 10 15 15 C 1.55150 * 103.02353 * 338.14389 * 14 13 12 16 16 H 1.09006 * 111.00307 * 277.23305 * 15 14 13 17 17 N 1.46494 * 111.00864 * 153.38205 * 15 14 13 18 18 C 1.36935 * 120.00392 * 161.34759 * 17 15 14 19 19 H 1.08000 * 120.00381 * 0.02562 * 18 17 15 20 20 C 1.38820 * 119.99929 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99691 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00086 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47029 * 90.00203 * 22 20 18 24 24 H 1.48496 * 109.47225 * 209.99977 * 22 20 18 25 25 H 1.48501 * 109.47071 * 330.00478 * 22 20 18 26 26 C 1.47425 * 125.64570 * 180.02562 * 12 10 9 27 27 H 1.09007 * 109.46760 * 90.03014 * 1 2 3 28 28 H 1.09005 * 109.46804 * 210.02164 * 1 2 3 29 29 H 1.09000 * 109.47376 * 330.02826 * 1 2 3 30 30 H 1.08001 * 126.44734 * 359.71683 * 3 2 1 31 31 H 1.08998 * 109.47364 * 89.99973 * 5 4 3 32 32 H 1.09000 * 109.88255 * 298.40148 * 13 12 10 33 33 H 1.09002 * 109.87821 * 59.56399 * 13 12 10 34 34 H 1.09002 * 110.84876 * 219.67279 * 14 13 12 35 35 H 1.09004 * 110.51177 * 96.45506 * 14 13 12 36 36 H 0.97003 * 119.99936 * 341.35300 * 17 15 14 37 37 H 0.96996 * 119.99784 * 179.97438 * 21 20 18 38 38 H 1.09000 * 110.36509 * 322.92634 * 26 12 10 39 39 H 1.08999 * 110.37026 * 85.13963 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6746 0.0006 5 6 4.8550 1.5358 0.0002 6 9 5.8906 0.8646 -0.6587 7 9 4.5849 2.7392 -0.6602 8 8 3.6005 -0.6646 0.0004 9 6 2.3220 -1.0955 0.0002 10 6 1.8843 -2.4952 -0.0006 11 8 0.6969 -2.7615 -0.0011 12 7 2.7973 -3.4867 -0.0006 13 6 4.2566 -3.3078 -0.0064 14 6 4.8906 -4.7146 0.0255 15 6 3.7558 -5.5964 0.6101 16 1 3.7380 -5.5393 1.6986 17 7 3.8853 -6.9848 0.1613 18 6 3.2432 -7.9864 0.8393 19 1 2.6409 -7.7527 1.7048 20 6 3.3665 -9.3021 0.4142 21 7 2.7497 -10.2648 1.0663 22 14 4.4076 -9.7063 -1.0831 23 1 5.8047 -9.9743 -0.6568 24 1 3.8571 -10.9085 -1.7589 25 1 4.3889 -8.5574 -2.0237 26 6 2.4979 -4.9302 -0.0018 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 2.0305 2.1596 -0.0043 31 1 5.1529 1.7442 1.0278 32 1 4.5620 -2.7818 -0.9109 33 1 4.5645 -2.7444 0.8744 34 1 5.7656 -4.7312 0.6753 35 1 5.1509 -5.0392 -0.9820 36 1 4.4260 -7.1948 -0.6162 37 1 2.8355 -11.1841 0.7690 38 1 1.6221 -5.1365 0.6134 39 1 2.3369 -5.2834 -1.0204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018994464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:21 Heat of formation + Delta-G solvation = -97.051970 kcal Electronic energy + Delta-G solvation = -26074.816659 eV Core-core repulsion = 21848.655965 eV Total energy + Delta-G solvation = -4226.160693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.58368 -47.60614 -43.13963 -39.74679 -37.57346 -34.69318 -34.16881 -32.13342 -31.58760 -30.06109 -28.45716 -27.90853 -26.68126 -24.06360 -22.63432 -21.90440 -21.41344 -20.26428 -19.57849 -18.26889 -18.13287 -17.72882 -17.56247 -17.17116 -16.72976 -16.04217 -15.56025 -14.69029 -14.53572 -14.38550 -14.06311 -14.02579 -13.89933 -13.61274 -13.36734 -13.35745 -13.19976 -12.95364 -12.72609 -12.69344 -12.48380 -12.39020 -11.87389 -11.77674 -11.30208 -10.96986 -10.81177 -10.56255 -10.18778 -10.11848 -10.08491 -9.67791 -9.11784 -9.06118 -8.51409 -7.43329 -5.86111 -3.24895 0.60155 1.77864 1.92834 2.88320 3.04088 3.28929 3.31751 3.33994 3.40567 3.57421 4.12556 4.23646 4.36794 4.49418 4.50519 4.73552 4.92866 5.03921 5.10792 5.11918 5.26149 5.36025 5.51857 5.55068 5.61936 5.65324 5.78897 5.80186 5.82947 6.05389 6.09443 6.18913 6.27943 6.39028 6.51050 6.69300 7.47161 7.87373 8.00096 8.32194 9.08296 9.80062 9.97454 11.31462 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.003106 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.982383 B = 9013.760406 C =10031.267901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.098 4.098 3 C -0.165 4.165 4 C -0.083 4.083 5 C 0.364 3.636 6 F -0.188 7.188 7 F -0.184 7.184 8 O -0.137 6.137 9 C -0.043 4.043 10 C 0.608 3.392 11 O -0.515 6.515 12 N -0.602 5.602 13 C 0.105 3.895 14 C -0.142 4.142 15 C 0.178 3.822 16 H 0.075 0.925 17 N -0.735 5.735 18 C -0.255 4.255 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.928 5.928 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.083 3.917 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.365 0.635 37 H 0.261 0.739 38 H 0.080 0.920 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 26.980 -1.702 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.184 4.184 4 C -0.136 4.136 5 C 0.310 3.690 6 F -0.169 7.169 7 F -0.165 7.165 8 O -0.032 6.032 9 C -0.096 4.096 10 C 0.395 3.605 11 O -0.393 6.393 12 N -0.334 5.334 13 C -0.018 4.018 14 C -0.181 4.181 15 C 0.066 3.934 16 H 0.093 0.907 17 N -0.376 5.376 18 C -0.385 4.385 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.574 5.574 22 Si 0.714 3.286 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.042 4.042 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.181 0.819 31 H 0.159 0.841 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.198 0.802 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.507 26.486 -1.562 26.762 hybrid contribution 0.723 -0.166 -1.304 1.501 sum 4.231 26.320 -2.866 26.811 Atomic orbital electron populations 1.20446 0.87513 1.03915 1.03194 1.20639 0.98060 0.90328 1.01055 1.21485 0.90634 1.00754 1.05539 1.23021 0.97061 0.82797 1.10729 1.19572 0.79556 0.75938 0.93951 1.93075 1.59550 1.80581 1.83721 1.93064 1.94073 1.45428 1.83898 1.84128 1.28811 1.19909 1.70379 1.22268 0.80666 0.95273 1.11420 1.16115 0.85152 0.80980 0.78239 1.90871 1.15085 1.81710 1.51651 1.48455 1.06861 1.07581 1.70549 1.22087 0.79420 0.98440 1.01871 1.22956 0.99278 0.93268 1.02610 1.21284 0.90265 0.84222 0.97644 0.90697 1.42649 1.59384 1.01325 1.34285 1.19075 1.24162 0.85760 1.09476 0.88918 1.24691 0.99741 0.95545 0.98654 1.69699 1.46466 0.99813 1.41467 0.86559 0.80620 0.77754 0.83622 1.20900 1.21581 1.20256 1.23478 1.02213 0.76121 1.02358 0.90596 0.89092 0.91269 0.81860 0.84133 0.91314 0.91144 0.89633 0.90532 0.80159 0.92846 0.90117 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.81 36.01 0.35 -0.62 16 2 C -0.10 -1.14 6.20 -104.43 -0.65 -1.78 16 3 C -0.16 -1.52 10.38 -39.89 -0.41 -1.94 16 4 C -0.08 -0.79 6.93 -35.41 -0.25 -1.03 16 5 C 0.36 2.46 5.82 36.01 0.21 2.67 16 6 F -0.19 -1.71 17.31 2.25 0.04 -1.67 16 7 F -0.18 -1.39 17.02 2.25 0.04 -1.35 16 8 O -0.14 -1.63 8.26 5.01 0.04 -1.59 16 9 C -0.04 -0.58 6.95 -36.80 -0.26 -0.84 16 10 C 0.61 9.77 7.82 -12.86 -0.10 9.67 16 11 O -0.51 -9.49 14.99 5.20 0.08 -9.41 16 12 N -0.60 -9.42 3.33 -172.04 -0.57 -10.00 16 13 C 0.11 1.35 5.55 -3.05 -0.02 1.34 16 14 C -0.14 -1.97 6.57 -24.89 -0.16 -2.13 16 15 C 0.18 3.20 3.69 -65.78 -0.24 2.95 16 16 H 0.08 1.39 8.13 -51.93 -0.42 0.96 16 17 N -0.73 -16.39 5.08 -51.34 -0.26 -16.65 16 18 C -0.26 -6.92 10.47 -15.06 -0.16 -7.08 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -28.52 13.97 55.49 0.78 -27.74 16 22 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 26 C 0.08 1.48 6.60 -2.52 -0.02 1.47 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.12 6.45 -51.93 -0.33 0.78 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 33 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.04 8.00 -51.93 -0.42 0.63 16 36 H 0.36 7.93 5.57 -40.82 -0.23 7.71 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -32.50 337.49 -6.03 -38.53 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.75 Total: 5.28 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.79 Total: 2.87 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.06 Total: -54.39 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.12 Total: -11.00 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.50 -6.03 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018994464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.520 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds