Wall clock time and date at job start Fri Apr 10 2020 22:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47468 * 275.08093 * 3 2 1 5 5 H 1.48499 * 109.47410 * 35.08214 * 3 2 1 6 6 H 1.48508 * 109.47117 * 155.08535 * 3 2 1 7 7 C 1.38809 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00061 * 342.71902 * 7 2 1 9 9 N 1.36939 * 120.00438 * 162.72180 * 7 2 1 10 10 C 1.47429 * 125.64529 * 324.40150 * 9 7 2 11 11 C 1.54912 * 104.83220 * 155.90448 * 10 9 7 12 12 C 1.55158 * 101.58142 * 37.00791 * 11 10 9 13 13 C 1.47023 * 125.65188 * 144.43170 * 9 7 2 14 14 H 1.08992 * 110.01167 * 300.51817 * 13 9 7 15 15 C 1.53001 * 109.87535 * 61.61205 * 13 9 7 16 16 N 1.46501 * 109.47231 * 296.17222 * 15 13 9 17 17 C 1.34774 * 119.99848 * 173.21665 * 16 15 13 18 18 O 1.21696 * 120.00032 * 359.97438 * 17 16 15 19 19 C 1.46658 * 119.99927 * 180.02562 * 17 16 15 20 20 C 1.36537 * 125.98976 * 179.97438 * 19 17 16 21 21 C 1.40365 * 106.71208 * 179.97438 * 20 19 17 22 22 C 1.35129 * 107.11138 * 359.97438 * 21 20 19 23 23 C 1.50702 * 125.61612 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47260 * 210.00254 * 23 22 21 25 25 F 1.39903 * 109.47237 * 330.00315 * 23 22 21 26 26 O 1.33929 * 108.76915 * 359.75763 * 22 21 20 27 27 H 0.97006 * 119.99648 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.36112 * 274.74015 * 10 9 7 29 29 H 1.08998 * 110.36586 * 37.06070 * 10 9 7 30 30 H 1.08995 * 111.00062 * 278.92565 * 11 10 9 31 31 H 1.08999 * 111.00334 * 155.07971 * 11 10 9 32 32 H 1.09001 * 110.71550 * 206.13923 * 12 11 10 33 33 H 1.08988 * 110.72213 * 82.85934 * 12 11 10 34 34 H 1.08999 * 109.47623 * 56.17678 * 15 13 9 35 35 H 1.09010 * 109.46748 * 176.17667 * 15 13 9 36 36 H 0.97001 * 119.99914 * 353.21360 * 16 15 13 37 37 H 1.08004 * 126.64883 * 359.95234 * 20 19 17 38 38 H 1.08003 * 126.44728 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46694 * 90.00131 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3903 2.1085 -1.3946 5 1 1.5055 2.6193 0.8047 6 1 3.5974 1.4115 0.5898 7 6 2.0102 -1.2021 -0.0005 8 1 1.5068 -2.1164 0.2769 9 7 3.3333 -1.2288 -0.3528 10 6 3.9650 -0.3856 -1.3840 11 6 5.4611 -0.3268 -0.9863 12 6 5.6984 -1.7644 -0.4530 13 6 4.3589 -2.1035 0.2343 14 1 4.4355 -1.9212 1.3061 15 6 4.0001 -3.5690 -0.0197 16 7 2.7477 -3.8916 0.6685 17 6 2.1626 -5.0904 0.4763 18 8 2.6744 -5.9046 -0.2694 19 6 0.9086 -5.4131 1.1648 20 6 0.2138 -6.5838 1.0597 21 6 -0.9151 -6.4586 1.8844 22 6 -0.8604 -5.2326 2.4500 23 6 -1.8713 -4.6640 3.4121 24 9 -1.9201 -3.2731 3.2694 25 9 -3.1319 -5.2054 3.1380 26 8 0.2429 -4.6078 2.0184 27 1 -0.4850 0.8401 -0.0004 28 1 3.8516 -0.8408 -2.3679 29 1 3.5305 0.6140 -1.3752 30 1 5.6284 0.4131 -0.2036 31 1 6.0883 -0.1236 -1.8543 32 1 6.5159 -1.7781 0.2678 33 1 5.8954 -2.4529 -1.2745 34 1 3.8790 -3.7332 -1.0905 35 1 4.7976 -4.2090 0.3581 36 1 2.3397 -3.2424 1.2626 37 1 0.4809 -7.4402 0.4583 38 1 -1.6832 -7.2022 2.0380 39 1 -1.5824 -4.9146 4.4328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028290309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:31 Heat of formation + Delta-G solvation = -84.602634 kcal Electronic energy + Delta-G solvation = -26680.545667 eV Core-core repulsion = 22454.924818 eV Total energy + Delta-G solvation = -4225.620849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.12272 -47.13171 -42.69888 -39.26866 -37.88703 -34.30023 -33.14456 -32.67719 -31.25379 -30.01102 -29.50866 -26.68546 -24.94622 -23.86400 -22.09247 -21.72084 -20.86516 -20.01543 -19.68831 -18.45601 -17.81752 -17.40886 -17.11591 -16.48628 -16.32554 -16.04178 -15.52758 -14.76469 -14.46399 -14.11589 -13.96184 -13.77435 -13.56518 -13.44863 -13.08012 -13.02148 -12.97342 -12.79060 -12.55385 -12.38359 -12.02890 -11.54616 -11.37614 -11.30866 -10.97666 -10.79883 -10.52987 -10.24091 -10.09959 -9.97696 -9.84256 -9.56354 -8.86578 -8.63072 -8.46002 -6.89252 -6.02844 -3.49393 0.99437 2.16189 2.34853 3.28390 3.34644 3.42492 3.46922 3.49642 3.74678 4.00592 4.47170 4.56865 4.70523 4.82261 4.87065 5.04784 5.10607 5.27768 5.41570 5.47318 5.52271 5.62183 5.71417 5.80614 5.87640 6.00609 6.06517 6.20726 6.22942 6.25684 6.33889 6.54129 6.70552 6.78411 6.81813 6.88341 7.81367 7.89822 8.27141 8.42415 8.75740 9.59768 10.17155 11.10971 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.004862 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.768503 B = 5757.075782 C = 7478.513322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.037 3.963 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.090 0.910 9 N -0.601 5.601 10 C 0.118 3.882 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.142 3.858 14 H 0.049 0.951 15 C 0.113 3.887 16 N -0.690 5.690 17 C 0.594 3.406 18 O -0.535 6.535 19 C -0.035 4.035 20 C -0.138 4.138 21 C -0.172 4.172 22 C -0.077 4.077 23 C 0.362 3.638 24 F -0.180 7.180 25 F -0.186 7.186 26 O -0.130 6.130 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.419 0.581 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -9.795 6.610 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.164 4.164 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.107 0.893 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.067 0.933 15 C -0.012 4.012 16 N -0.341 5.341 17 C 0.379 3.621 18 O -0.415 6.415 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.191 4.191 22 C -0.131 4.131 23 C 0.308 3.692 24 F -0.161 7.161 25 F -0.167 7.167 26 O -0.025 6.025 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.259 0.741 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.070 -9.885 6.201 12.066 hybrid contribution -0.152 1.255 0.009 1.264 sum 2.918 -8.630 6.210 11.025 Atomic orbital electron populations 1.69818 1.05795 1.26853 1.51183 1.25434 0.95150 0.97960 0.97903 0.86696 0.80094 0.84115 0.76923 1.21596 1.23172 1.19349 1.18634 0.82149 0.94084 1.44135 0.89260 1.44688 1.05082 1.44054 1.38875 1.21890 0.90816 0.95199 0.92731 1.22782 0.97506 0.96691 1.00448 1.22481 0.96322 0.97062 1.00004 1.21284 0.89098 0.89199 0.96949 0.93295 1.22083 0.84077 0.97444 0.97593 1.46205 1.25498 1.15481 1.46952 1.16526 0.81386 0.83008 0.81161 1.90834 1.63390 1.49307 1.37965 1.22525 0.97158 0.91508 0.97632 1.21906 0.94375 0.98410 1.01156 1.21546 1.00583 0.97032 0.99939 1.23088 0.91411 0.94303 1.04261 1.19553 0.77574 0.75046 0.97061 1.93147 1.96317 1.29549 1.97069 1.93047 1.42183 1.85823 1.95669 1.84123 1.29595 1.40912 1.47836 0.92528 0.95056 0.94145 0.91555 0.91493 0.91320 0.91181 0.91140 0.92328 0.74130 0.81695 0.81971 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.97 55.49 0.78 -26.18 16 2 C 0.04 1.05 5.45 -17.43 -0.10 0.95 16 3 Si 0.89 22.08 24.78 -169.99 -4.21 17.87 16 4 H -0.29 -7.08 6.87 56.52 0.39 -6.69 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.39 6.99 56.52 0.40 -6.00 16 7 C -0.26 -6.98 9.51 -15.06 -0.14 -7.12 16 8 H 0.09 2.48 5.49 -52.49 -0.29 2.19 16 9 N -0.60 -13.58 2.68 -162.57 -0.44 -14.02 16 10 C 0.12 2.46 6.19 -2.53 -0.02 2.44 16 11 C -0.14 -2.21 7.09 -24.58 -0.17 -2.39 16 12 C -0.12 -1.77 6.48 -24.90 -0.16 -1.93 16 13 C 0.14 2.58 3.31 -66.95 -0.22 2.36 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C 0.11 2.00 5.16 -4.04 -0.02 1.98 16 16 N -0.69 -13.08 4.33 -61.62 -0.27 -13.35 16 17 C 0.59 11.35 7.79 -12.86 -0.10 11.25 16 18 O -0.53 -11.04 16.84 5.19 0.09 -10.95 16 19 C -0.03 -0.60 7.13 -36.80 -0.26 -0.86 16 20 C -0.14 -2.01 10.62 -39.40 -0.42 -2.43 16 21 C -0.17 -2.19 10.42 -39.89 -0.42 -2.60 16 22 C -0.08 -1.10 6.93 -35.41 -0.25 -1.35 16 23 C 0.36 4.26 5.82 36.01 0.21 4.47 16 24 F -0.18 -2.88 17.31 2.25 0.04 -2.85 16 25 F -0.19 -2.23 17.02 2.25 0.04 -2.20 16 26 O -0.13 -2.29 10.38 4.99 0.05 -2.23 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.92 3.18 -51.93 -0.16 0.76 16 30 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.95 7.85 -51.94 -0.41 0.54 16 34 H 0.07 1.36 8.11 -51.93 -0.42 0.93 16 35 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.42 8.35 6.06 -40.82 -0.25 8.10 16 37 H 0.17 2.11 8.06 -52.48 -0.42 1.69 16 38 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -32.74 332.28 -5.47 -38.21 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.49 Total: 5.93 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.06 Total: 4.76 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.07 Total: -53.55 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.14 Total: -13.18 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.08 Total: -5.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.21 Total: 17.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.74 -5.47 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028290309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.392 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds