Wall clock time and date at job start Fri Apr 10 2020 22:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47468 * 275.08093 * 3 2 1 5 5 H 1.48499 * 109.47410 * 35.08214 * 3 2 1 6 6 H 1.48508 * 109.47117 * 155.08535 * 3 2 1 7 7 C 1.38809 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00061 * 342.71902 * 7 2 1 9 9 N 1.36939 * 120.00438 * 162.72180 * 7 2 1 10 10 C 1.47429 * 125.64529 * 324.40150 * 9 7 2 11 11 C 1.54912 * 104.83220 * 155.90448 * 10 9 7 12 12 C 1.55158 * 101.58142 * 37.00791 * 11 10 9 13 13 C 1.47023 * 125.65188 * 144.43170 * 9 7 2 14 14 H 1.08992 * 110.01167 * 300.51817 * 13 9 7 15 15 C 1.53001 * 109.87535 * 61.61205 * 13 9 7 16 16 N 1.46501 * 109.47231 * 296.17222 * 15 13 9 17 17 C 1.34774 * 119.99848 * 173.21665 * 16 15 13 18 18 O 1.21696 * 120.00032 * 359.97438 * 17 16 15 19 19 C 1.46658 * 119.99927 * 180.02562 * 17 16 15 20 20 C 1.36537 * 125.98976 * 179.97438 * 19 17 16 21 21 C 1.40365 * 106.71208 * 179.97438 * 20 19 17 22 22 C 1.35129 * 107.11138 * 359.97438 * 21 20 19 23 23 C 1.50702 * 125.61612 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47260 * 210.00254 * 23 22 21 25 25 F 1.39903 * 109.47237 * 330.00315 * 23 22 21 26 26 O 1.33929 * 108.76915 * 359.75763 * 22 21 20 27 27 H 0.97006 * 119.99648 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.36112 * 274.74015 * 10 9 7 29 29 H 1.08998 * 110.36586 * 37.06070 * 10 9 7 30 30 H 1.08995 * 111.00062 * 278.92565 * 11 10 9 31 31 H 1.08999 * 111.00334 * 155.07971 * 11 10 9 32 32 H 1.09001 * 110.71550 * 206.13923 * 12 11 10 33 33 H 1.08988 * 110.72213 * 82.85934 * 12 11 10 34 34 H 1.08999 * 109.47623 * 56.17678 * 15 13 9 35 35 H 1.09010 * 109.46748 * 176.17667 * 15 13 9 36 36 H 0.97001 * 119.99914 * 353.21360 * 16 15 13 37 37 H 1.08004 * 126.64883 * 359.95234 * 20 19 17 38 38 H 1.08003 * 126.44728 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46694 * 90.00131 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3903 2.1085 -1.3946 5 1 1.5055 2.6193 0.8047 6 1 3.5974 1.4115 0.5898 7 6 2.0102 -1.2021 -0.0005 8 1 1.5068 -2.1164 0.2769 9 7 3.3333 -1.2288 -0.3528 10 6 3.9650 -0.3856 -1.3840 11 6 5.4611 -0.3268 -0.9863 12 6 5.6984 -1.7644 -0.4530 13 6 4.3589 -2.1035 0.2343 14 1 4.4355 -1.9212 1.3061 15 6 4.0001 -3.5690 -0.0197 16 7 2.7477 -3.8916 0.6685 17 6 2.1626 -5.0904 0.4763 18 8 2.6744 -5.9046 -0.2694 19 6 0.9086 -5.4131 1.1648 20 6 0.2138 -6.5838 1.0597 21 6 -0.9151 -6.4586 1.8844 22 6 -0.8604 -5.2326 2.4500 23 6 -1.8713 -4.6640 3.4121 24 9 -1.9201 -3.2731 3.2694 25 9 -3.1319 -5.2054 3.1380 26 8 0.2429 -4.6078 2.0184 27 1 -0.4850 0.8401 -0.0004 28 1 3.8516 -0.8408 -2.3679 29 1 3.5305 0.6140 -1.3752 30 1 5.6284 0.4131 -0.2036 31 1 6.0883 -0.1236 -1.8543 32 1 6.5159 -1.7781 0.2678 33 1 5.8954 -2.4529 -1.2745 34 1 3.8790 -3.7332 -1.0905 35 1 4.7976 -4.2090 0.3581 36 1 2.3397 -3.2424 1.2626 37 1 0.4809 -7.4402 0.4583 38 1 -1.6832 -7.2022 2.0380 39 1 -1.5824 -4.9146 4.4328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028290309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:31 Heat of formation + Delta-G solvation = -106.970942 kcal Electronic energy + Delta-G solvation = -26681.515630 eV Core-core repulsion = 22454.924818 eV Total energy + Delta-G solvation = -4226.590812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.14335 -48.18561 -43.89910 -40.75680 -39.41500 -35.76547 -34.64879 -34.33436 -32.44645 -31.78750 -30.91333 -27.87344 -26.51343 -25.50733 -23.42994 -22.89725 -22.23965 -21.50484 -21.07470 -19.84951 -18.88029 -18.76732 -18.16139 -18.06068 -17.94618 -17.33787 -17.04266 -16.42409 -15.91398 -15.47715 -15.24583 -15.08093 -14.86796 -14.84682 -14.53766 -14.25393 -14.22143 -14.11249 -13.90555 -13.84272 -13.65040 -13.05608 -12.96563 -12.66358 -12.54378 -12.27176 -12.15050 -11.75991 -11.51699 -11.40984 -11.36404 -11.23162 -10.69599 -10.23125 -9.82636 -8.77242 -8.16964 -5.58766 -0.25934 1.03085 1.23521 1.29256 1.38608 1.50108 1.96173 2.15384 2.42276 2.71904 3.03857 3.05979 3.33840 3.52444 3.72622 3.81723 3.87008 3.91381 3.97433 4.12488 4.30234 4.39975 4.43236 4.45822 4.62935 4.71908 4.73286 4.84099 4.98171 5.01025 5.12952 5.16248 5.29441 5.34875 5.48237 5.62255 5.87290 6.19061 6.38104 6.81299 6.93781 7.54250 8.19709 9.00691 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.004862 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.768503 B = 5757.075782 C = 7478.513322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.025 4.025 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.315 1.315 6 H -0.250 1.250 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.125 4.125 12 C -0.108 4.108 13 C 0.137 3.863 14 H 0.051 0.949 15 C 0.116 3.884 16 N -0.696 5.696 17 C 0.592 3.408 18 O -0.558 6.558 19 C -0.077 4.077 20 C -0.123 4.123 21 C -0.159 4.159 22 C -0.087 4.087 23 C 0.360 3.640 24 F -0.209 7.209 25 F -0.186 7.186 26 O -0.159 6.159 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.183 0.817 38 H 0.201 0.799 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -10.818 7.270 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.222 4.222 3 Si 0.782 3.218 4 H -0.215 1.215 5 H -0.245 1.245 6 H -0.174 1.174 7 C -0.371 4.371 8 H 0.085 0.915 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.146 4.146 13 C 0.031 3.969 14 H 0.069 0.931 15 C -0.008 4.008 16 N -0.346 5.346 17 C 0.378 3.622 18 O -0.441 6.441 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.178 4.178 22 C -0.140 4.140 23 C 0.306 3.694 24 F -0.190 7.190 25 F -0.167 7.167 26 O -0.054 6.054 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.250 0.750 37 H 0.200 0.800 38 H 0.218 0.782 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.052 -10.926 6.855 13.852 hybrid contribution -0.797 1.414 -0.210 1.637 sum 4.255 -9.511 6.645 12.358 Atomic orbital electron populations 1.69960 1.07477 1.27142 1.54759 1.26066 0.95693 1.01242 0.99176 0.85704 0.79350 0.80087 0.76642 1.21546 1.24457 1.17430 1.18680 0.84088 0.93137 1.41179 0.91484 1.44846 1.04648 1.44977 1.39999 1.22076 0.93999 0.93571 0.92326 1.22755 0.94142 0.97619 1.01811 1.22519 0.94875 0.96214 1.01013 1.21542 0.89868 0.88222 0.97289 0.93112 1.22103 0.84426 0.97778 0.96521 1.46295 1.26005 1.15396 1.46902 1.16757 0.81887 0.82665 0.80888 1.90795 1.64369 1.49804 1.39096 1.22403 0.97861 0.92963 0.99754 1.22281 0.94055 0.97642 1.00342 1.21959 1.00404 0.97119 0.98273 1.23838 0.90870 0.94949 1.04351 1.20253 0.76905 0.73228 0.98966 1.93088 1.96422 1.32236 1.97294 1.93044 1.42187 1.85582 1.95847 1.84087 1.30914 1.41945 1.48477 0.93071 0.95297 0.96160 0.91606 0.88140 0.87821 0.89578 0.92972 0.89522 0.74963 0.80000 0.78163 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.97 21.65 0.30 -59.40 16 2 C -0.03 -1.47 5.45 84.86 0.46 -1.01 16 3 Si 0.95 46.68 24.78 68.60 1.70 48.38 16 4 H -0.29 -13.87 6.87 99.48 0.68 -13.19 16 5 H -0.32 -15.87 7.11 99.48 0.71 -15.16 16 6 H -0.25 -11.32 6.99 99.48 0.70 -10.62 16 7 C -0.24 -13.19 9.51 84.03 0.80 -12.39 16 8 H 0.07 3.92 5.49 -2.91 -0.02 3.90 16 9 N -0.62 -27.67 2.68 -668.25 -1.79 -29.47 16 10 C 0.10 4.19 6.19 86.86 0.54 4.72 16 11 C -0.13 -3.59 7.09 31.99 0.23 -3.36 16 12 C -0.11 -2.74 6.48 31.78 0.21 -2.54 16 13 C 0.14 4.74 3.31 45.34 0.15 4.89 16 14 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 15 C 0.12 4.02 5.16 86.38 0.45 4.47 16 16 N -0.70 -27.00 4.33 -467.09 -2.02 -29.02 16 17 C 0.59 23.15 7.79 86.44 0.67 23.83 16 18 O -0.56 -23.33 16.84 -4.33 -0.07 -23.40 16 19 C -0.08 -2.74 7.13 24.07 0.17 -2.57 16 20 C -0.12 -3.46 10.62 22.39 0.24 -3.23 16 21 C -0.16 -3.71 10.42 22.07 0.23 -3.48 16 22 C -0.09 -2.42 6.93 24.97 0.17 -2.24 16 23 C 0.36 7.95 5.82 71.24 0.41 8.36 16 24 F -0.21 -6.79 17.31 44.97 0.78 -6.01 16 25 F -0.19 -4.10 17.02 44.97 0.77 -3.34 16 26 O -0.16 -5.70 10.38 -5.06 -0.05 -5.76 16 27 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.02 0.91 3.18 -2.39 -0.01 0.90 16 30 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 1.95 7.85 -2.39 -0.02 1.94 16 34 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.41 17.14 6.06 -92.71 -0.56 16.58 16 37 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.20 3.03 8.06 -2.91 -0.02 3.00 16 39 H 0.20 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.26 332.28 4.84 -70.42 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.51 Total: 22.15 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 4.73 Total: 15.45 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -3.51 Total: -117.89 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.13 Total: -29.16 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.54 Total: -9.35 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.70 Total: 48.38 kcal Total: -75.26 4.84 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028290309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.553 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds