Wall clock time and date at job start Fri Apr 10 2020 22:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21611 * 120.00748 * 0.02562 * 16 15 14 18 18 C 1.47385 * 119.99493 * 180.02562 * 16 15 14 19 19 C 1.36410 * 127.19206 * 359.68535 * 18 16 15 20 20 O 1.33662 * 108.39490 * 179.83837 * 19 18 16 21 21 C 1.34207 * 110.90727 * 0.44950 * 20 19 18 22 22 C 1.50697 * 125.43828 * 179.72352 * 21 20 19 23 23 F 1.39907 * 109.47265 * 120.00168 * 22 21 20 24 24 F 1.39902 * 109.47419 * 240.00268 * 22 21 20 25 25 C 1.34178 * 109.12439 * 359.72863 * 21 20 19 26 26 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 27 27 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 28 28 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 29 29 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 30 30 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 31 31 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 32 32 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 33 33 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 34 34 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 35 35 H 1.07998 * 125.80735 * 0.02562 * 19 18 16 36 36 H 1.09004 * 109.47243 * 0.02562 * 22 21 20 37 37 H 1.08008 * 127.01987 * 180.02562 * 25 21 20 38 38 H 1.08998 * 109.88206 * 59.48273 * 26 9 7 39 39 H 1.09007 * 109.88177 * 298.32145 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1754 -8.1701 2.0150 18 6 3.6561 -8.6843 0.2869 19 6 4.2461 -8.4759 -0.9252 20 8 5.1380 -9.4494 -1.1332 21 6 5.1574 -10.3093 -0.1030 22 6 6.0360 -11.5292 0.0006 23 9 6.8555 -11.4193 1.1292 24 9 5.2365 -12.6716 0.1144 25 6 4.2695 -9.9094 0.8201 26 6 1.9319 -3.7274 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 -0.5290 -2.4860 -1.0162 29 1 -0.5991 -1.7588 0.6182 30 1 -1.3585 -4.3328 0.2810 31 1 -0.3505 -3.8984 1.7017 32 1 1.4902 -5.5610 1.8930 33 1 0.2283 -6.5362 1.1025 34 1 2.5066 -6.5062 -0.5666 35 1 4.0315 -7.6609 -1.6006 36 1 6.6565 -11.6070 -0.8923 37 1 4.0504 -10.3893 1.7626 38 1 2.5596 -3.8509 0.8809 39 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028763430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:35 Heat of formation + Delta-G solvation = -94.091902 kcal Electronic energy + Delta-G solvation = -25116.220044 eV Core-core repulsion = 20890.187710 eV Total energy + Delta-G solvation = -4226.032335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.58756 -47.59227 -43.09990 -39.58013 -37.66798 -34.76727 -33.47044 -32.61622 -31.64230 -29.82198 -28.34958 -26.56421 -25.67491 -24.33260 -22.93509 -21.67531 -20.62940 -19.98722 -19.80396 -18.75753 -17.95583 -17.78458 -16.94061 -16.72034 -16.51533 -16.25167 -15.97720 -15.34498 -14.78473 -14.50714 -14.44391 -13.97074 -13.94115 -13.71453 -13.56457 -13.45138 -13.10294 -12.89080 -12.55805 -11.87106 -11.80332 -11.75787 -11.55611 -10.99853 -10.82114 -10.52069 -10.31038 -10.23997 -10.12608 -10.04089 -9.82627 -9.56319 -9.45268 -9.06349 -8.68414 -6.87843 -5.69104 -3.11105 0.82553 1.38479 1.84548 2.96874 3.16403 3.37846 3.38024 3.42223 3.43532 3.59979 4.03380 4.20836 4.37234 4.44044 4.45419 4.87948 5.06081 5.09777 5.18685 5.30520 5.34365 5.48426 5.64805 5.70210 5.82277 6.00804 6.05064 6.29311 6.31148 6.32536 6.48950 6.53903 6.65733 6.84615 7.40158 7.46911 7.58300 7.81891 8.10031 8.32612 9.18215 9.79188 10.43619 11.34840 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.002306 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.545809 B =12138.109342 C =12798.848118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.719 5.719 16 C 0.583 3.417 17 O -0.535 6.535 18 C -0.232 4.232 19 C 0.049 3.951 20 O -0.157 6.157 21 C -0.113 4.113 22 C 0.364 3.636 23 F -0.184 7.184 24 F -0.184 7.184 25 C -0.095 4.095 26 C 0.141 3.859 27 H 0.253 0.747 28 H 0.012 0.988 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.223 0.777 36 H 0.134 0.866 37 H 0.167 0.833 38 H 0.024 0.976 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -21.916 -3.790 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.010 3.990 15 N -0.370 5.370 16 C 0.370 3.630 17 O -0.413 6.413 18 C -0.237 4.237 19 C -0.022 4.022 20 O -0.053 6.053 21 C -0.162 4.162 22 C 0.309 3.691 23 F -0.165 7.165 24 F -0.165 7.165 25 C -0.115 4.115 26 C 0.015 3.985 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.239 0.761 36 H 0.151 0.849 37 H 0.185 0.815 38 H 0.042 0.958 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.671 -21.959 -3.204 23.825 hybrid contribution 0.490 1.033 -0.314 1.186 sum 9.161 -20.926 -3.518 23.113 Atomic orbital electron populations 1.69784 1.04897 1.24959 1.57451 1.24794 0.95741 0.97758 1.02338 0.86147 0.78411 0.82997 0.77898 1.21218 1.21529 1.21130 1.19023 0.90458 0.82495 1.43337 0.90594 1.44505 1.01988 0.99694 1.86880 1.21948 0.84644 0.92496 0.98220 1.23012 0.95486 0.98567 1.00394 1.22454 0.98438 0.93934 0.98602 0.90536 1.21523 0.89928 0.90932 0.96615 1.45923 1.41940 1.26090 1.23040 1.17150 0.80857 0.80210 0.84790 1.90807 1.59076 1.71050 1.20352 1.21626 1.04544 1.00295 0.97225 1.24716 0.88831 0.91463 0.97157 1.83674 1.50322 1.30988 1.40293 1.22361 1.05848 0.97410 0.90568 1.19020 0.83351 0.78061 0.88620 1.93087 1.72147 1.96005 1.55235 1.93081 1.75632 1.50960 1.96848 1.22678 0.94398 0.94369 1.00041 1.21331 0.93426 0.86031 0.97684 0.93627 0.96966 0.87507 0.92056 0.91765 0.90918 0.91318 0.76747 0.76052 0.84904 0.81514 0.95777 0.96482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -15.07 3.40 -170.04 -0.58 -15.65 16 10 C 0.15 3.57 5.89 -2.50 -0.01 3.55 16 11 C -0.14 -2.42 6.53 -24.58 -0.16 -2.58 16 12 C -0.11 -1.80 2.95 -88.79 -0.26 -2.06 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.13 1.86 5.02 -4.04 -0.02 1.84 16 15 N -0.72 -8.58 5.46 -61.39 -0.34 -8.92 16 16 C 0.58 7.90 7.81 -12.54 -0.10 7.80 16 17 O -0.54 -9.37 16.98 5.27 0.09 -9.28 16 18 C -0.23 -2.52 6.31 -103.28 -0.65 -3.17 16 19 C 0.05 0.37 11.61 30.07 0.35 0.72 16 20 O -0.16 -1.27 10.52 7.65 0.08 -1.19 16 21 C -0.11 -0.98 6.71 -35.74 -0.24 -1.22 16 22 C 0.36 2.38 5.75 36.00 0.21 2.59 16 23 F -0.18 -1.53 17.32 2.25 0.04 -1.49 16 24 F -0.18 -1.49 17.32 2.25 0.04 -1.45 16 25 C -0.09 -1.01 10.90 -37.46 -0.41 -1.42 16 26 C 0.14 2.75 6.76 -3.07 -0.02 2.73 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 32 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.63 7.44 -40.82 -0.30 3.32 16 35 H 0.22 0.80 7.47 -52.49 -0.39 0.41 16 36 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -33.88 341.52 -6.29 -40.17 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.74 Total: -0.19 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.57 Total: 2.06 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.35 Total: -50.56 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.17 Total: -10.48 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.88 -6.29 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028763430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.924 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds