Wall clock time and date at job start Fri Apr 10 2020 22:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48505 * 109.47209 * 269.99924 * 3 2 1 5 5 H 1.48501 * 109.47422 * 30.00104 * 3 2 1 6 6 H 1.48504 * 109.47192 * 150.00061 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.52996 * 110.71864 * 206.13184 * 12 11 10 15 15 N 1.46498 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.34780 * 120.00246 * 180.02562 * 15 14 12 17 17 O 1.21692 * 119.99903 * 0.02562 * 16 15 14 18 18 C 1.46653 * 119.99973 * 180.02562 * 16 15 14 19 19 C 1.36545 * 125.98507 * 179.97438 * 18 16 15 20 20 C 1.40362 * 106.70985 * 179.97438 * 19 18 16 21 21 C 1.35133 * 107.11431 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.62061 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47559 * 210.00109 * 22 21 20 24 24 F 1.39903 * 109.47025 * 330.00778 * 22 21 20 25 25 O 1.33939 * 108.76514 * 359.76887 * 21 20 19 26 26 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 27 27 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 29 29 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 30 30 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 31 31 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 32 32 H 1.09003 * 109.47550 * 299.97884 * 14 12 11 33 33 H 1.09000 * 109.47105 * 59.97868 * 14 12 11 34 34 H 0.96999 * 120.00294 * 0.02562 * 15 14 12 35 35 H 1.07999 * 126.64677 * 359.93130 * 19 18 16 36 36 H 1.07998 * 126.45090 * 180.02562 * 20 19 18 37 37 H 1.09005 * 109.46870 * 89.99606 * 22 21 20 38 38 H 1.09004 * 109.87531 * 300.21350 * 26 9 7 39 39 H 1.08996 * 109.88343 * 61.22069 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1186 -5.9328 -0.9333 15 7 2.2370 -6.6858 -0.3604 16 6 2.7123 -7.7749 -0.9965 17 8 2.2128 -8.1324 -2.0470 18 6 3.8316 -8.5291 -0.4227 19 6 4.4066 -9.6448 -0.9602 20 6 5.4338 -10.0309 -0.0850 21 6 5.4403 -9.1455 0.9358 22 6 6.3810 -9.1699 2.1129 23 9 5.7429 -8.6230 3.2314 24 9 6.7513 -10.4909 2.3866 25 8 4.4764 -8.2393 0.7263 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5227 -2.4852 1.0265 29 1 -0.6022 -1.7598 -0.6083 30 1 -0.3599 -3.9007 -1.6907 31 1 -1.3604 -4.3336 -0.2642 32 1 0.2498 -6.5848 -1.0235 33 1 1.3980 -5.5613 -1.9193 34 1 2.6355 -6.4007 0.4767 35 1 4.1252 -10.1355 -1.8802 36 1 6.0948 -10.8766 -0.2048 37 1 7.2703 -8.5843 1.8794 38 1 2.5544 -3.8525 -0.8864 39 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028960231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:40 Heat of formation + Delta-G solvation = -114.624094 kcal Electronic energy + Delta-G solvation = -25429.124201 eV Core-core repulsion = 21202.201523 eV Total energy + Delta-G solvation = -4226.922678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15766 -48.19531 -43.93722 -40.79816 -39.27344 -36.24924 -34.56523 -34.22663 -32.47923 -31.57925 -29.98090 -27.98647 -27.05702 -25.30408 -23.41638 -22.93012 -22.13311 -21.44154 -21.13333 -19.73130 -18.89666 -18.80265 -18.36967 -18.16395 -17.48950 -17.27420 -16.86262 -16.57206 -15.86247 -15.72507 -15.34767 -15.09651 -14.84638 -14.55249 -14.37927 -14.29531 -14.25756 -14.15119 -13.87084 -13.56456 -13.39665 -13.16371 -12.84119 -12.67361 -12.56543 -12.03652 -12.01301 -11.85020 -11.64130 -11.52182 -11.29703 -11.26330 -10.74843 -10.38181 -9.90212 -8.89070 -7.78269 -5.22647 -0.30967 1.01170 1.12664 1.46234 1.48044 1.56631 1.93000 1.95617 2.49024 2.65710 3.05273 3.31151 3.46417 3.60870 3.69666 3.76270 3.82030 3.88037 3.94393 4.04266 4.37856 4.39971 4.41954 4.62519 4.67097 4.71257 4.76722 4.88949 4.99845 5.12056 5.12690 5.18625 5.35959 5.46636 5.53732 5.65715 5.82198 6.27690 6.31820 6.85010 7.10648 7.78277 8.41541 9.23584 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.002789 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.740626 B =10037.127411 C =11168.240941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.095 0.905 14 C 0.142 3.858 15 N -0.705 5.705 16 C 0.600 3.400 17 O -0.550 6.550 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.162 4.162 21 C -0.080 4.080 22 C 0.362 3.638 23 F -0.204 7.204 24 F -0.186 7.186 25 O -0.154 6.154 26 C 0.136 3.864 27 H 0.247 0.753 28 H -0.011 1.011 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.414 0.586 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.189 0.811 38 H 0.022 0.978 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -22.470 2.153 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.113 0.887 14 C 0.019 3.981 15 N -0.355 5.355 16 C 0.387 3.613 17 O -0.431 6.431 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.132 4.132 22 C 0.309 3.691 23 F -0.185 7.185 24 F -0.167 7.167 25 O -0.050 6.050 26 C 0.011 3.989 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.250 0.750 35 H 0.196 0.804 36 H 0.213 0.787 37 H 0.205 0.795 38 H 0.040 0.960 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.485 -22.242 1.657 25.087 hybrid contribution 0.281 1.164 0.479 1.290 sum 11.765 -21.078 2.136 24.234 Atomic orbital electron populations 1.70049 1.06185 1.25043 1.58549 1.25633 0.96664 1.00987 1.02691 0.85053 0.77591 0.79029 0.77503 1.21232 1.21960 1.19516 1.19450 0.90992 0.83910 1.42645 0.90310 1.44829 1.02882 1.00925 1.86808 1.21752 0.84004 0.95008 0.96636 1.22848 0.97631 0.95255 1.00224 1.22303 0.95932 0.93296 1.00005 0.88684 1.21382 0.88683 0.91746 0.96317 1.45953 1.35435 1.27316 1.26814 1.16662 0.80911 0.80175 0.83575 1.90876 1.59730 1.69396 1.23075 1.22175 0.99913 1.01375 0.89248 1.22311 0.95390 0.94633 1.01758 1.21970 1.01103 1.01785 0.93187 1.23729 0.94952 0.93355 1.01212 1.20130 0.93003 0.79013 0.76938 1.93050 1.84522 1.85580 1.55396 1.93063 1.91616 1.38201 1.93779 1.84013 1.38291 1.46136 1.36548 1.21500 0.94786 0.84835 0.97741 0.94305 0.99264 0.90992 0.91545 0.89027 0.89522 0.91776 0.74977 0.80388 0.78688 0.79498 0.95993 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.60 10.09 21.65 0.22 -56.39 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -32.26 3.39 -691.99 -2.35 -34.61 16 10 C 0.15 7.34 5.89 86.86 0.51 7.85 16 11 C -0.12 -4.23 6.53 31.99 0.21 -4.02 16 12 C -0.10 -2.98 3.02 -9.61 -0.03 -3.01 16 13 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 14 C 0.14 3.81 4.99 86.38 0.43 4.24 16 15 N -0.71 -17.66 5.40 -467.11 -2.52 -20.18 16 16 C 0.60 16.07 7.79 86.44 0.67 16.74 16 17 O -0.55 -17.74 16.86 -4.32 -0.07 -17.81 16 18 C -0.07 -1.68 7.13 24.07 0.17 -1.51 16 19 C -0.12 -2.17 10.62 22.39 0.24 -1.94 16 20 C -0.16 -2.18 10.42 22.07 0.23 -1.95 16 21 C -0.08 -1.23 6.93 24.97 0.17 -1.06 16 22 C 0.36 3.83 5.82 71.24 0.41 4.25 16 23 F -0.20 -3.46 17.31 44.97 0.78 -2.68 16 24 F -0.19 -2.21 17.02 44.97 0.77 -1.44 16 25 O -0.15 -3.21 10.38 -5.06 -0.05 -3.26 16 26 C 0.14 5.42 6.52 86.73 0.57 5.98 16 27 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 30 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 34 H 0.41 9.37 8.08 -92.71 -0.75 8.62 16 35 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.19 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.02 0.89 7.77 -2.38 -0.02 0.87 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.15 341.68 4.06 -68.09 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.34 Total: 11.03 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.92 Total: 9.50 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.65 Total: -111.17 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.13 Total: -21.07 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.54 Total: -4.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.15 4.06 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028960231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.534 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds