Wall clock time and date at job start Fri Apr 10 2020 22:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36080 * 117.00281 * 2 1 4 4 C 1.38721 * 120.06276 * 270.20590 * 3 2 1 5 5 F 1.35105 * 119.99760 * 0.04790 * 4 3 2 6 6 C 1.38422 * 120.00004 * 180.27724 * 4 3 2 7 7 C 1.38472 * 120.12395 * 359.74849 * 6 4 3 8 8 F 1.35102 * 119.93818 * 180.02562 * 7 6 4 9 9 C 1.38368 * 120.12864 * 0.02562 * 7 6 4 10 10 C 1.38775 * 119.99636 * 359.97438 * 9 7 6 11 11 N 1.40164 * 120.06026 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00245 * 34.66525 * 11 10 9 13 13 O 1.21593 * 119.99897 * 355.56695 * 12 11 10 14 14 N 1.34778 * 119.99861 * 175.55918 * 12 11 10 15 15 C 1.46494 * 120.00139 * 0.02562 * 14 12 11 16 16 C 1.46502 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.09005 * 109.47165 * 0.02562 * 16 14 12 18 18 C 1.52994 * 109.47118 * 240.00150 * 16 14 12 19 19 C 1.50704 * 109.46948 * 120.00020 * 16 14 12 20 20 H 1.07998 * 120.00135 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99653 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00538 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99923 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47405 * 119.99778 * 23 21 19 26 26 H 1.48500 * 109.46872 * 239.99864 * 23 21 19 27 27 H 1.09004 * 109.46799 * 59.99963 * 1 2 3 28 28 H 1.08997 * 109.47721 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46947 * 300.00374 * 1 2 3 30 30 H 1.07996 * 119.93837 * 179.76575 * 6 4 3 31 31 H 1.07993 * 120.00283 * 180.02562 * 9 7 6 32 32 H 0.97005 * 119.99863 * 214.67231 * 11 10 9 33 33 H 1.08995 * 109.47788 * 270.00016 * 15 14 12 34 34 H 1.08999 * 109.47342 * 30.00418 * 15 14 12 35 35 H 1.09006 * 109.47507 * 149.99772 * 15 14 12 36 36 H 1.08997 * 109.47027 * 299.99772 * 18 16 14 37 37 H 1.08997 * 109.47502 * 59.99678 * 18 16 14 38 38 H 1.09000 * 109.47354 * 179.97438 * 18 16 14 39 39 H 0.96998 * 120.00647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 2.3585 1.8336 -1.2006 5 9 2.0477 1.2351 -2.3713 6 6 2.9921 3.0642 -1.1991 7 6 3.3114 3.6801 -0.0007 8 9 3.9294 4.8815 -0.0036 9 6 2.9987 3.0674 1.1999 10 6 2.3635 1.8336 1.2045 11 7 2.0466 1.2115 2.4199 12 6 1.6862 1.9558 3.4841 13 8 1.7135 3.1694 3.4144 14 7 1.2954 1.3549 4.6254 15 6 1.2629 -0.1073 4.7094 16 6 0.9030 2.1639 5.7820 17 1 0.9905 3.2214 5.5322 18 6 1.8188 1.8412 6.9643 19 6 -0.5242 1.8521 6.1522 20 1 -1.0829 1.1238 5.5832 21 6 -1.1165 2.4967 7.2174 22 7 -0.4360 3.3832 7.9107 23 14 -2.8854 2.1097 7.6769 24 1 -3.4251 1.0845 6.7481 25 1 -2.9337 1.5924 9.0680 26 1 -3.7036 3.3451 7.5794 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.2377 3.5451 -2.1344 31 1 3.2483 3.5497 2.1334 32 1 2.0869 0.2452 2.4951 33 1 0.2822 -0.4675 4.3986 34 1 2.0278 -0.5259 4.0554 35 1 1.4545 -0.4166 5.7369 36 1 1.7309 0.7839 7.2140 37 1 2.8510 2.0666 6.6966 38 1 1.5272 2.4435 7.8248 39 1 -0.8526 3.8363 8.6603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352963243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:34 Heat of formation + Delta-G solvation = -111.732311 kcal Electronic energy + Delta-G solvation = -26678.489831 eV Core-core repulsion = 22451.692551 eV Total energy + Delta-G solvation = -4226.797280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.12416 -49.01264 -40.72545 -39.12874 -37.28204 -35.66508 -34.49665 -32.86321 -30.19393 -29.90917 -28.82033 -26.85877 -26.32855 -25.28677 -23.68623 -22.66714 -21.33774 -19.51303 -18.72378 -17.98843 -17.81169 -17.11634 -16.49369 -16.36029 -16.03187 -15.82363 -15.51024 -15.20460 -15.13589 -14.80832 -14.68383 -14.45255 -14.21823 -13.47307 -13.35779 -12.94939 -12.72150 -12.68638 -12.12904 -12.01902 -11.72947 -11.66140 -11.62306 -11.13337 -10.90079 -10.78880 -10.48370 -10.31391 -10.24285 -10.15018 -9.51422 -9.24165 -8.69756 -8.50495 -8.33852 -7.71637 -6.14275 -4.22454 0.69289 0.87749 2.78282 2.94756 3.21553 3.30078 3.32420 3.48191 3.68943 3.85850 4.21644 4.24795 4.38190 4.69909 4.84752 5.02815 5.16569 5.17563 5.22804 5.40672 5.47497 5.53573 5.65577 5.76485 5.89977 6.02350 6.12851 6.35313 6.57533 6.64318 6.70963 6.87343 7.01668 7.20986 7.32898 7.59494 7.68118 7.95774 8.10969 8.44957 8.76785 8.99003 9.44458 10.91131 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.003764 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.436006 B = 7437.595477 C = 8116.705513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.010 3.990 4 C 0.133 3.867 5 F -0.124 7.124 6 C -0.208 4.208 7 C 0.149 3.851 8 F -0.127 7.127 9 C -0.159 4.159 10 C 0.227 3.773 11 N -0.686 5.686 12 C 0.695 3.305 13 O -0.575 6.575 14 N -0.598 5.598 15 C 0.085 3.915 16 C 0.271 3.729 17 H 0.067 0.933 18 C -0.148 4.148 19 C -0.527 4.527 20 H 0.060 0.940 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.899 3.101 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.013 0.987 38 H 0.096 0.904 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -6.657 -14.688 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C -0.039 4.039 4 C 0.112 3.888 5 F -0.103 7.103 6 C -0.229 4.229 7 C 0.128 3.872 8 F -0.105 7.105 9 C -0.181 4.181 10 C 0.128 3.872 11 N -0.335 5.335 12 C 0.397 3.603 13 O -0.452 6.452 14 N -0.332 5.332 15 C -0.059 4.059 16 C 0.171 3.829 17 H 0.084 0.916 18 C -0.207 4.207 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.727 3.273 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.251 0.749 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.114 0.886 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.759 -5.843 -14.432 16.601 hybrid contribution -1.176 -0.513 0.120 1.289 sum 4.583 -6.357 -14.312 16.317 Atomic orbital electron populations 1.23120 0.78561 1.03559 1.01259 1.86111 1.20397 1.23173 1.94147 1.18210 1.04924 0.90669 0.90057 1.17169 0.99786 0.91301 0.80553 1.91516 1.90798 1.82961 1.45006 1.20819 1.06801 0.96165 0.99102 1.17007 0.95285 0.81935 0.92952 1.91540 1.79775 1.41886 1.97298 1.21400 1.00972 0.96401 0.99293 1.17196 0.93560 0.92074 0.84399 1.42964 1.71091 1.10847 1.08611 1.15989 0.78714 0.85341 0.80219 1.90885 1.60604 1.11546 1.82151 1.47657 1.66425 1.06644 1.12456 1.21553 1.00023 0.81283 1.03071 1.18974 0.93172 0.91959 0.78768 0.91564 1.22122 0.95866 1.00354 1.02339 1.21332 0.96696 1.24239 1.14305 0.92227 1.24880 0.98156 0.94735 0.95936 1.69877 1.36570 1.26048 1.19958 0.86427 0.84405 0.78249 0.78216 1.19866 1.20887 1.20887 0.93361 0.88359 0.92923 0.83147 0.81357 0.74938 0.92988 0.93542 0.90093 0.95024 0.96828 0.88578 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.13 101.05 1.13 1.44 16 2 O -0.32 -4.10 9.83 -19.99 -0.20 -4.30 16 3 C 0.01 0.13 5.75 -39.06 -0.22 -0.10 16 4 C 0.13 1.67 7.30 -39.34 -0.29 1.38 16 5 F -0.12 -1.54 17.11 2.25 0.04 -1.50 16 6 C -0.21 -2.43 10.00 -39.43 -0.39 -2.82 16 7 C 0.15 1.99 7.29 -39.45 -0.29 1.70 16 8 F -0.13 -1.72 17.26 2.25 0.04 -1.68 16 9 C -0.16 -2.43 8.68 -39.33 -0.34 -2.77 16 10 C 0.23 3.38 6.32 -83.50 -0.53 2.86 16 11 N -0.69 -10.55 5.07 -14.12 -0.07 -10.62 16 12 C 0.70 13.73 8.13 -86.92 -0.71 13.02 16 13 O -0.57 -13.35 13.09 5.28 0.07 -13.28 16 14 N -0.60 -11.99 2.75 -181.01 -0.50 -12.49 16 15 C 0.08 1.30 9.48 59.84 0.57 1.87 16 16 C 0.27 6.61 2.64 -69.08 -0.18 6.42 16 17 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 18 C -0.15 -3.38 8.95 37.15 0.33 -3.04 16 19 C -0.53 -13.69 8.37 -34.44 -0.29 -13.98 16 20 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 21 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 23 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.17 2.92 6.19 -52.49 -0.32 2.59 16 32 H 0.41 5.30 6.25 -40.82 -0.26 5.05 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.55 6.30 -51.93 -0.33 0.22 16 35 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 36 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -29.45 336.15 -5.59 -35.04 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.33 Total: 4.39 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.31 Total: 7.62 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.06 Total: -46.83 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.13 Total: -17.58 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.45 -5.59 -35.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352963243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.691 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds