Wall clock time and date at job start Fri Apr 10 2020 22:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36080 * 117.00281 * 2 1 4 4 C 1.38721 * 120.06276 * 270.20590 * 3 2 1 5 5 F 1.35105 * 119.99760 * 0.04790 * 4 3 2 6 6 C 1.38422 * 120.00004 * 180.27724 * 4 3 2 7 7 C 1.38472 * 120.12395 * 359.74849 * 6 4 3 8 8 F 1.35102 * 119.93818 * 180.02562 * 7 6 4 9 9 C 1.38368 * 120.12864 * 0.02562 * 7 6 4 10 10 C 1.38775 * 119.99636 * 359.97438 * 9 7 6 11 11 N 1.40164 * 120.06026 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00245 * 34.66525 * 11 10 9 13 13 O 1.21593 * 119.99897 * 355.56695 * 12 11 10 14 14 N 1.34778 * 119.99861 * 175.55918 * 12 11 10 15 15 C 1.46494 * 120.00139 * 0.02562 * 14 12 11 16 16 C 1.46502 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.09005 * 109.47165 * 0.02562 * 16 14 12 18 18 C 1.52994 * 109.47118 * 240.00150 * 16 14 12 19 19 C 1.50704 * 109.46948 * 120.00020 * 16 14 12 20 20 H 1.07998 * 120.00135 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99653 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00538 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99923 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47405 * 119.99778 * 23 21 19 26 26 H 1.48500 * 109.46872 * 239.99864 * 23 21 19 27 27 H 1.09004 * 109.46799 * 59.99963 * 1 2 3 28 28 H 1.08997 * 109.47721 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46947 * 300.00374 * 1 2 3 30 30 H 1.07996 * 119.93837 * 179.76575 * 6 4 3 31 31 H 1.07993 * 120.00283 * 180.02562 * 9 7 6 32 32 H 0.97005 * 119.99863 * 214.67231 * 11 10 9 33 33 H 1.08995 * 109.47788 * 270.00016 * 15 14 12 34 34 H 1.08999 * 109.47342 * 30.00418 * 15 14 12 35 35 H 1.09006 * 109.47507 * 149.99772 * 15 14 12 36 36 H 1.08997 * 109.47027 * 299.99772 * 18 16 14 37 37 H 1.08997 * 109.47502 * 59.99678 * 18 16 14 38 38 H 1.09000 * 109.47354 * 179.97438 * 18 16 14 39 39 H 0.96998 * 120.00647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 2.3585 1.8336 -1.2006 5 9 2.0477 1.2351 -2.3713 6 6 2.9921 3.0642 -1.1991 7 6 3.3114 3.6801 -0.0007 8 9 3.9294 4.8815 -0.0036 9 6 2.9987 3.0674 1.1999 10 6 2.3635 1.8336 1.2045 11 7 2.0466 1.2115 2.4199 12 6 1.6862 1.9558 3.4841 13 8 1.7135 3.1694 3.4144 14 7 1.2954 1.3549 4.6254 15 6 1.2629 -0.1073 4.7094 16 6 0.9030 2.1639 5.7820 17 1 0.9905 3.2214 5.5322 18 6 1.8188 1.8412 6.9643 19 6 -0.5242 1.8521 6.1522 20 1 -1.0829 1.1238 5.5832 21 6 -1.1165 2.4967 7.2174 22 7 -0.4360 3.3832 7.9107 23 14 -2.8854 2.1097 7.6769 24 1 -3.4251 1.0845 6.7481 25 1 -2.9337 1.5924 9.0680 26 1 -3.7036 3.3451 7.5794 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.2377 3.5451 -2.1344 31 1 3.2483 3.5497 2.1334 32 1 2.0869 0.2452 2.4951 33 1 0.2822 -0.4675 4.3986 34 1 2.0278 -0.5259 4.0554 35 1 1.4545 -0.4166 5.7369 36 1 1.7309 0.7839 7.2140 37 1 2.8510 2.0666 6.6966 38 1 1.5272 2.4435 7.8248 39 1 -0.8526 3.8363 8.6603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352963243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:34 Heat of formation + Delta-G solvation = -129.227259 kcal Electronic energy + Delta-G solvation = -26679.248469 eV Core-core repulsion = 22451.692551 eV Total energy + Delta-G solvation = -4227.555918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.12340 -50.09004 -42.02703 -40.40713 -38.36794 -37.28260 -35.92077 -34.68746 -31.70485 -31.02537 -30.20966 -27.84078 -27.65675 -27.27294 -24.95319 -23.76468 -22.89546 -21.01654 -19.97269 -19.11924 -18.99178 -18.54092 -18.10394 -17.50814 -17.35550 -16.97958 -16.78793 -16.55569 -16.39157 -16.10409 -15.87265 -15.63627 -15.46115 -15.02008 -14.59374 -14.44830 -14.27247 -13.68446 -13.50364 -13.31581 -13.16684 -13.01339 -12.91713 -12.72006 -12.65433 -12.58425 -12.18565 -12.10583 -11.59745 -11.34708 -11.15852 -10.98724 -10.52516 -9.80656 -9.62783 -9.21934 -8.14249 -6.30197 -0.37566 -0.20862 1.40124 1.41752 1.46764 1.55264 1.81964 2.17053 2.40814 2.53799 2.73654 2.98694 3.14327 3.14786 3.70649 3.76135 3.91481 4.29402 4.35252 4.37533 4.44846 4.53314 4.60013 4.70122 4.74806 4.75262 4.89435 4.93692 4.99328 5.05266 5.18318 5.36690 5.48619 5.50612 5.65240 5.92548 6.10854 6.17545 6.19547 6.76622 6.94032 7.34336 7.50141 8.90288 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.003764 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.436006 B = 7437.595477 C = 8116.705513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.326 6.326 3 C 0.018 3.982 4 C 0.134 3.866 5 F -0.119 7.119 6 C -0.183 4.183 7 C 0.145 3.855 8 F -0.129 7.129 9 C -0.172 4.172 10 C 0.208 3.792 11 N -0.668 5.668 12 C 0.694 3.306 13 O -0.618 6.618 14 N -0.605 5.605 15 C 0.080 3.920 16 C 0.277 3.723 17 H 0.014 0.986 18 C -0.134 4.134 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.017 3.983 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.287 1.287 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.037 0.963 30 H 0.183 0.817 31 H 0.141 0.859 32 H 0.425 0.575 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.069 0.931 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -8.713 -16.525 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.243 6.243 3 C -0.030 4.030 4 C 0.113 3.887 5 F -0.097 7.097 6 C -0.204 4.204 7 C 0.125 3.875 8 F -0.107 7.107 9 C -0.194 4.194 10 C 0.109 3.891 11 N -0.318 5.318 12 C 0.396 3.604 13 O -0.499 6.499 14 N -0.339 5.339 15 C -0.062 4.062 16 C 0.175 3.825 17 H 0.032 0.968 18 C -0.193 4.193 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.789 3.211 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.214 1.214 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.056 0.944 30 H 0.200 0.800 31 H 0.159 0.841 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.282 -7.963 -16.311 18.904 hybrid contribution -0.990 0.128 0.576 1.153 sum 4.292 -7.835 -15.735 18.094 Atomic orbital electron populations 1.23296 0.77240 1.05356 1.00839 1.86102 1.21518 1.22564 1.94102 1.18207 1.04357 0.90661 0.89743 1.17141 0.99708 0.91441 0.80368 1.91538 1.90724 1.82895 1.44541 1.21035 1.04491 0.95359 0.99484 1.16989 0.95635 0.81954 0.92962 1.91535 1.79857 1.42038 1.97301 1.21253 1.02108 0.96946 0.99121 1.17249 0.94878 0.92429 0.84527 1.42553 1.70457 1.11050 1.07764 1.16079 0.78477 0.84967 0.80885 1.90861 1.62248 1.13708 1.83034 1.47485 1.66478 1.08332 1.11574 1.21806 1.01921 0.78269 1.04196 1.18535 0.93299 0.90047 0.80584 0.96774 1.21909 0.95840 1.00911 1.00637 1.21583 0.97545 1.24107 1.14232 0.92063 1.25685 1.02000 0.94589 0.96006 1.70017 1.38175 1.26946 1.20387 0.85428 0.79552 0.77875 0.78260 1.18907 1.20070 1.21369 0.92702 0.85530 0.94415 0.79970 0.84098 0.73401 0.92201 0.89643 0.90098 0.93125 0.95985 0.91221 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.13 113.37 1.26 1.76 16 2 O -0.33 -7.50 9.83 -94.46 -0.93 -8.43 16 3 C 0.02 0.47 5.75 22.61 0.13 0.60 16 4 C 0.13 3.02 7.30 22.43 0.16 3.19 16 5 F -0.12 -2.56 17.11 44.97 0.77 -1.79 16 6 C -0.18 -3.81 10.00 22.37 0.22 -3.58 16 7 C 0.14 3.76 7.29 22.36 0.16 3.93 16 8 F -0.13 -3.43 17.26 44.97 0.78 -2.66 16 9 C -0.17 -5.37 8.68 22.43 0.19 -5.17 16 10 C 0.21 6.08 6.32 38.16 0.24 6.33 16 11 N -0.67 -20.20 5.07 -316.84 -1.61 -21.81 16 12 C 0.69 27.94 8.13 179.06 1.46 29.40 16 13 O -0.62 -30.24 13.09 -4.01 -0.05 -30.29 16 14 N -0.61 -24.39 2.75 -844.85 -2.33 -26.71 16 15 C 0.08 2.33 9.48 127.77 1.21 3.54 16 16 C 0.28 13.90 2.64 44.24 0.12 14.02 16 17 H 0.01 0.86 6.90 -2.38 -0.02 0.84 16 18 C -0.13 -6.22 8.95 71.98 0.64 -5.58 16 19 C -0.54 -28.12 8.37 25.60 0.21 -27.90 16 20 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 21 C 0.02 0.90 5.30 84.65 0.45 1.35 16 22 N -0.92 -51.58 11.32 21.45 0.24 -51.33 16 23 Si 0.96 42.01 29.54 68.60 2.03 44.03 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.14 5.22 6.19 -2.91 -0.02 5.20 16 32 H 0.42 10.20 6.25 -92.70 -0.58 9.62 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.77 6.30 -2.39 -0.02 1.76 16 35 H 0.08 2.35 6.43 -2.38 -0.02 2.34 16 36 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 39 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -65.83 336.15 5.90 -59.92 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.53 Total: 17.21 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 6.47 Total: 21.87 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.69 Total: -99.86 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.98 Total: -38.72 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.55 Total: -4.45 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.83 5.90 -59.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352963243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.305 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds