Wall clock time and date at job start Fri Apr 10 2020 22:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47725 * 2 1 4 4 C 1.42898 * 114.00246 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46944 * 65.00004 * 5 4 3 7 7 C 1.34783 * 119.99984 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99647 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99852 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46668 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99815 * 179.97438 * 10 9 7 12 12 N 1.32388 * 126.26079 * 359.97438 * 11 10 9 13 13 N 1.28511 * 110.20972 * 180.02562 * 12 11 10 14 14 C 1.33102 * 109.74196 * 0.02562 * 13 12 11 15 15 C 1.39784 * 126.56422 * 179.97438 * 14 13 12 16 16 H 1.07990 * 119.99937 * 186.21013 * 15 14 13 17 17 C 1.40079 * 119.99787 * 6.21173 * 15 14 13 18 18 N 1.30818 * 120.00007 * 6.44701 * 17 15 14 19 19 Si 1.86802 * 120.00049 * 186.44417 * 17 15 14 20 20 H 1.48499 * 109.47321 * 265.01629 * 19 17 15 21 21 H 1.48499 * 109.46774 * 25.01756 * 19 17 15 22 22 H 1.48500 * 109.47127 * 145.01048 * 19 17 15 23 23 N 1.36673 * 126.25843 * 180.30346 * 11 10 9 24 24 C 1.46491 * 127.15480 * 359.97438 * 23 11 10 25 25 H 1.09007 * 109.46828 * 60.00345 * 1 2 3 26 26 H 1.09001 * 109.47587 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47173 * 300.00333 * 1 2 3 28 28 H 1.09007 * 109.47106 * 239.99491 * 2 1 3 29 29 H 1.09006 * 109.46958 * 120.00192 * 2 1 3 30 30 H 1.08999 * 109.46930 * 59.99922 * 4 3 2 31 31 H 1.09002 * 109.46859 * 299.99716 * 4 3 2 32 32 H 1.08998 * 109.47328 * 304.99907 * 5 4 3 33 33 H 1.09002 * 109.46928 * 184.99912 * 5 4 3 34 34 H 0.97005 * 120.00173 * 0.02562 * 6 5 4 35 35 H 1.09006 * 109.47121 * 60.00355 * 9 7 6 36 36 H 1.08993 * 109.47471 * 300.00044 * 9 7 6 37 37 H 0.97004 * 120.00095 * 179.97438 * 18 17 15 38 38 H 1.09010 * 109.46877 * 270.13447 * 24 23 11 39 39 H 1.09003 * 109.47456 * 30.12807 * 24 23 11 40 40 H 1.08999 * 109.47490 * 150.13479 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 6 3.8255 2.9382 -0.0001 6 7 3.3868 3.5612 1.2511 7 6 3.6283 4.8684 1.4739 8 8 4.2092 5.5286 0.6388 9 6 3.1766 5.5094 2.7608 10 16 3.6448 7.2578 2.7607 11 6 3.0129 7.7439 4.3320 12 7 2.3838 6.9649 5.1980 13 7 2.0564 7.6369 6.2433 14 6 2.4582 8.8988 6.1106 15 6 2.2836 9.9302 7.0378 16 1 2.5633 10.9410 6.7802 17 6 1.7459 9.6527 8.3012 18 7 1.5247 8.4143 8.6602 19 14 1.3446 11.0508 9.4732 20 1 2.4868 11.2650 10.3977 21 1 1.0969 12.2920 8.6966 22 1 0.1311 10.7069 10.2570 23 7 3.0771 8.9956 4.8770 24 6 3.6786 10.1906 4.2803 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8340 0.9762 -0.8892 31 1 3.8333 0.9765 0.8909 32 1 3.3501 3.4408 -0.8424 33 1 4.9084 3.0251 -0.0892 34 1 2.9233 3.0329 1.9196 35 1 3.6513 5.0066 3.6035 36 1 2.0937 5.4229 2.8493 37 1 1.1526 8.2221 9.5352 38 1 4.7290 10.2499 4.5659 39 1 3.6000 10.1335 3.1946 40 1 3.1547 11.0776 4.6364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321219607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:10 Heat of formation + Delta-G solvation = -18.760039 kcal Electronic energy + Delta-G solvation = -22729.612659 eV Core-core repulsion = 19092.980097 eV Total energy + Delta-G solvation = -3636.632562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48968 -39.69088 -38.36952 -34.96372 -33.68775 -33.30016 -31.96446 -30.49520 -29.30201 -28.27318 -26.45123 -25.48684 -23.16005 -22.93550 -20.99280 -20.77774 -20.31290 -17.45819 -17.28563 -17.05864 -16.84774 -16.17298 -15.64803 -15.54121 -15.32943 -14.68910 -14.51385 -14.36721 -13.94288 -13.52904 -13.50586 -13.32883 -12.85888 -12.76176 -12.33754 -12.19819 -12.13616 -12.02871 -11.72619 -11.43703 -11.38754 -11.28757 -10.91758 -10.40241 -10.24572 -10.08089 -9.91122 -9.70556 -9.58340 -9.21709 -8.68537 -8.43027 -8.36060 -6.78756 -6.66045 -4.55424 1.85894 2.62293 2.81959 2.92032 3.07198 3.11225 3.15489 3.28374 3.36893 3.88266 4.25937 4.41861 4.49898 4.64871 4.74485 4.82822 4.85101 4.98610 4.99075 5.18777 5.32833 5.35395 5.46561 5.53919 5.59068 5.59681 5.70979 5.79316 5.93108 6.08872 6.27213 6.77542 6.77615 6.90676 7.24949 7.35078 7.50522 7.90015 8.13962 8.19250 8.71125 8.87217 10.27624 10.63423 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.002467 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.539879 B =11348.313570 C =12457.163307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.386 6.386 4 C 0.050 3.950 5 C 0.124 3.876 6 N -0.724 5.724 7 C 0.535 3.465 8 O -0.529 6.529 9 C -0.133 4.133 10 S 0.019 5.981 11 C 0.032 3.968 12 N -0.290 5.290 13 N -0.336 5.336 14 C 0.348 3.652 15 C -0.448 4.448 16 H 0.084 0.916 17 C 0.080 3.920 18 N -0.739 5.739 19 Si 0.920 3.080 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.274 1.274 23 N -0.513 5.513 24 C 0.101 3.899 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.407 0.593 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -12.405 -13.722 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.027 4.027 5 C 0.000 4.000 6 N -0.378 5.378 7 C 0.321 3.679 8 O -0.405 6.405 9 C -0.284 4.284 10 S 0.244 5.756 11 C -0.339 4.339 12 N -0.136 5.136 13 N -0.183 5.183 14 C 0.103 3.897 15 C -0.489 4.489 16 H 0.102 0.898 17 C -0.145 4.145 18 N -0.363 5.363 19 Si 0.744 3.256 20 H -0.195 1.195 21 H -0.186 1.186 22 H -0.199 1.199 23 N -0.215 5.215 24 C -0.044 4.044 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.556 -12.584 -14.419 19.308 hybrid contribution -0.332 0.561 1.400 1.544 sum 2.224 -12.023 -13.019 17.861 Atomic orbital electron populations 1.21753 0.93554 1.02292 1.03444 1.22481 0.95835 0.83540 1.00064 1.87963 1.20506 1.26659 1.95443 1.22772 0.82172 0.96406 1.01395 1.21368 1.00078 0.90947 0.87585 1.45782 1.60982 1.10204 1.20792 1.19911 0.78658 0.81792 0.87578 1.90718 1.41135 1.62241 1.46419 1.23373 1.07346 0.98583 0.99143 1.85039 1.73624 1.04861 1.12073 1.25691 1.17446 0.87463 1.03329 1.74492 1.12103 1.27499 0.99493 1.75384 1.27701 1.01227 1.13992 1.21625 0.90859 0.94821 0.82369 1.18093 1.40998 0.93216 0.96558 0.89758 1.25785 0.93871 0.96640 0.98247 1.69993 1.27926 1.19212 1.19183 0.86118 0.78707 0.81013 0.79777 1.19495 1.18563 1.19921 1.46029 1.50696 1.07472 1.17322 1.21513 0.98016 0.87079 0.97824 0.91818 0.91097 0.91557 0.93427 0.93256 0.91585 0.92375 0.90463 0.89796 0.75846 0.86298 0.86247 0.90987 0.92416 0.91452 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.15 0.38 -0.60 16 2 C 0.06 0.38 6.66 37.15 0.25 0.63 16 3 O -0.39 -3.48 10.29 -35.23 -0.36 -3.84 16 4 C 0.05 0.35 6.07 37.16 0.23 0.57 16 5 C 0.12 1.15 6.06 -4.04 -0.02 1.12 16 6 N -0.72 -8.01 5.50 -60.29 -0.33 -8.34 16 7 C 0.54 7.91 7.85 -10.98 -0.09 7.82 16 8 O -0.53 -9.43 15.86 5.56 0.09 -9.34 16 9 C -0.13 -2.15 5.71 36.01 0.21 -1.94 16 10 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 11 C 0.03 0.79 8.09 -87.28 -0.71 0.09 16 12 N -0.29 -7.91 11.62 30.89 0.36 -7.55 16 13 N -0.34 -10.11 10.56 31.26 0.33 -9.78 16 14 C 0.35 9.81 7.50 -154.80 -1.16 8.65 16 15 C -0.45 -11.95 9.05 -38.31 -0.35 -12.30 16 16 H 0.08 2.04 7.26 -52.49 -0.38 1.66 16 17 C 0.08 2.05 5.49 -17.29 -0.09 1.96 16 18 N -0.74 -20.32 12.00 55.56 0.67 -19.66 16 19 Si 0.92 18.59 29.57 -169.99 -5.03 13.56 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 N -0.51 -12.64 3.26 -123.17 -0.40 -13.04 16 24 C 0.10 1.90 10.89 59.84 0.65 2.55 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 3.79 8.47 -40.82 -0.35 3.45 16 35 H 0.12 1.87 8.14 -51.91 -0.42 1.45 16 36 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 40 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -35.57 361.61 -7.92 -43.48 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.73 Total: 2.41 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.71 Total: 8.54 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.62 Total: -58.37 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.27 Total: -13.18 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.57 -7.92 -43.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321219607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.722 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds