Wall clock time and date at job start Fri Apr 10 2020 22:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99658 * 2 1 4 4 H 1.48500 * 109.47214 * 273.57856 * 3 2 1 5 5 H 1.48502 * 109.47373 * 33.58209 * 3 2 1 6 6 H 1.48507 * 109.46971 * 153.58410 * 3 2 1 7 7 C 1.39937 * 120.00247 * 180.27902 * 2 1 3 8 8 H 1.08003 * 119.99666 * 347.11356 * 7 2 1 9 9 C 1.41433 * 119.99941 * 167.11677 * 7 2 1 10 10 C 1.40785 * 120.17573 * 149.55716 * 9 7 2 11 11 C 1.37711 * 120.04203 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.40962 * 0.02562 * 11 10 9 13 13 C 1.39881 * 120.35989 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02716 * 180.02562 * 13 12 11 15 15 O 1.21552 * 119.99918 * 133.97969 * 14 13 12 16 16 N 1.34767 * 119.99913 * 313.98185 * 14 13 12 17 17 C 1.46290 * 120.17846 * 3.91372 * 16 14 13 18 18 C 1.52495 * 110.91662 * 232.48719 * 17 16 14 19 19 N 1.46759 * 110.63817 * 323.07093 * 18 17 16 20 20 C 1.34777 * 124.64986 * 220.97924 * 19 18 17 21 21 O 1.21282 * 124.81553 * 0.59233 * 20 19 18 22 22 C 1.51178 * 110.36357 * 180.62063 * 20 19 18 23 23 C 1.54599 * 104.14405 * 342.60241 * 22 20 19 24 24 C 1.47115 * 124.56230 * 39.83602 * 19 18 17 25 25 H 1.09003 * 110.78442 * 75.75931 * 24 19 18 26 26 C 1.47028 * 120.17689 * 183.63326 * 16 14 13 27 27 C 1.39038 * 119.95018 * 359.74513 * 13 12 11 28 28 H 0.97001 * 119.99939 * 359.71781 * 1 2 3 29 29 H 1.08005 * 119.98067 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.80018 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.82526 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.18239 * 352.84953 * 17 16 14 33 33 H 1.09001 * 109.19102 * 112.11004 * 17 16 14 34 34 H 1.08992 * 109.24596 * 83.36927 * 18 17 16 35 35 H 1.09000 * 109.24112 * 202.82061 * 18 17 16 36 36 H 1.09004 * 110.49550 * 223.93533 * 22 20 19 37 37 H 1.08994 * 110.60549 * 101.32415 * 22 20 19 38 38 H 1.09002 * 110.95341 * 266.54843 * 23 22 20 39 39 H 1.09001 * 110.98493 * 142.84472 * 23 22 20 40 40 H 1.08996 * 109.81080 * 240.68223 * 26 16 14 41 41 H 1.09001 * 109.80076 * 1.56084 * 26 16 14 42 42 H 1.07994 * 120.20596 * 180.25686 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4140 2.0902 -1.3973 5 1 1.4795 2.6297 0.7744 6 1 3.5756 1.4195 0.6229 7 6 2.0080 -1.2118 -0.0059 8 1 1.4884 -2.1364 0.1982 9 6 3.3956 -1.2259 -0.2791 10 6 4.2205 -2.2103 0.2976 11 6 5.5712 -2.2217 0.0293 12 6 6.1274 -1.2689 -0.8058 13 6 5.3237 -0.2831 -1.3879 14 6 5.9258 0.7313 -2.2798 15 8 5.3939 1.0020 -3.3388 16 7 7.0642 1.3555 -1.9186 17 6 7.7538 0.9726 -0.6865 18 6 8.0186 2.1917 0.1905 19 7 8.3551 3.3585 -0.6335 20 6 9.3179 4.2539 -0.3373 21 8 10.0335 4.2032 0.6406 22 6 9.3788 5.3308 -1.3966 23 6 8.6228 4.7209 -2.5993 24 6 7.7027 3.6962 -1.9081 25 1 6.7131 4.1196 -1.7359 26 6 7.6232 2.4208 -2.7638 27 6 3.9572 -0.2611 -1.1319 28 1 -0.4850 0.8401 0.0041 29 1 3.7937 -2.9570 0.9509 30 1 6.2004 -2.9784 0.4741 31 1 7.1879 -1.2864 -1.0094 32 1 7.1361 0.2628 -0.1361 33 1 8.7029 0.4999 -0.9391 34 1 7.1275 2.4120 0.7782 35 1 8.8487 1.9766 0.8635 36 1 10.4135 5.5444 -1.6647 37 1 8.8801 6.2366 -1.0518 38 1 9.3126 4.2263 -3.2831 39 1 8.0390 5.4804 -3.1193 40 1 8.6196 2.1383 -3.1035 41 1 6.9736 2.5900 -3.6226 42 1 3.3322 0.4956 -1.5824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329057908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:59 Heat of formation + Delta-G solvation = -31.609244 kcal Electronic energy + Delta-G solvation = -26491.804530 eV Core-core repulsion = 22822.711176 eV Total energy + Delta-G solvation = -3669.093354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07879 -39.62234 -37.61142 -36.97075 -35.42486 -33.75447 -33.08993 -31.20718 -30.36448 -29.61648 -28.42038 -25.47475 -24.83928 -23.67116 -22.35491 -21.64452 -21.14264 -20.02977 -18.60078 -17.74714 -16.89227 -16.81281 -16.25519 -16.04778 -15.55779 -15.42349 -15.20655 -14.77229 -14.23084 -14.00540 -13.87871 -13.72266 -13.59414 -13.08659 -13.03957 -12.80113 -12.63896 -12.34168 -12.02427 -11.83412 -11.70256 -11.57306 -11.46142 -11.31204 -10.98097 -10.83070 -10.51601 -10.20107 -9.96656 -9.87534 -9.48126 -9.28670 -9.18782 -8.44048 -7.94653 -7.80537 -7.05600 -4.64547 1.91909 2.39166 2.43891 2.63034 3.01198 3.06865 3.11104 3.17400 3.34021 3.86026 4.04926 4.16477 4.32792 4.37587 4.67952 4.72296 4.83448 4.94487 4.98411 5.18438 5.21496 5.33085 5.37657 5.42753 5.50249 5.60032 5.65775 5.70331 5.79725 5.82688 5.92716 6.32196 6.34035 6.44531 6.51425 6.63107 6.91443 6.91894 7.08944 7.25627 7.40198 7.45800 7.65821 7.87168 7.97989 8.18101 8.40046 8.44677 8.63516 9.96574 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004379 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.656339 B = 6392.292016 C = 6829.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.084 3.916 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.441 4.441 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.190 4.190 11 C -0.086 4.086 12 C -0.225 4.225 13 C -0.094 4.094 14 C 0.567 3.433 15 O -0.539 6.539 16 N -0.613 5.613 17 C 0.078 3.922 18 C 0.111 3.889 19 N -0.612 5.612 20 C 0.515 3.485 21 O -0.537 6.537 22 C -0.152 4.152 23 C -0.125 4.125 24 C 0.114 3.886 25 H 0.091 0.909 26 C 0.105 3.895 27 C -0.181 4.181 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.195 8.301 -2.832 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.168 1.168 7 C -0.469 4.469 8 H 0.113 0.887 9 C 0.084 3.916 10 C -0.210 4.210 11 C -0.104 4.104 12 C -0.244 4.244 13 C -0.097 4.097 14 C 0.358 3.642 15 O -0.416 6.416 16 N -0.347 5.347 17 C -0.045 4.045 18 C -0.011 4.011 19 N -0.347 5.347 20 C 0.303 3.697 21 O -0.414 6.414 22 C -0.192 4.192 23 C -0.164 4.164 24 C 0.009 3.991 25 H 0.109 0.891 26 C -0.018 4.018 27 C -0.201 4.201 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.949 8.425 -2.817 17.389 hybrid contribution 0.147 0.719 -0.017 0.734 sum 15.096 9.144 -2.833 17.875 Atomic orbital electron populations 1.69638 1.07937 1.30438 1.34795 1.26137 0.94850 1.01580 0.91002 0.86423 0.81047 0.80064 0.79290 1.19233 1.21602 1.16754 1.19543 0.91228 0.95754 1.40356 0.88663 1.17691 0.93561 0.90889 0.89463 1.21187 0.92827 1.02926 1.04063 1.20585 0.95138 0.97094 0.97570 1.20455 0.97567 1.00109 1.06312 1.19278 0.94540 0.96589 0.99255 1.19039 0.78657 0.80656 0.85865 1.90717 1.61573 1.65242 1.24043 1.47756 1.25406 1.37701 1.23824 1.22339 0.98782 0.97167 0.86211 1.21749 1.02109 0.84187 0.93034 1.48484 1.36388 1.26302 1.23538 1.21039 0.78979 0.83197 0.86490 1.90718 1.44236 1.76178 1.30284 1.22285 1.03630 0.98383 0.94933 1.22595 0.98461 0.98214 0.97086 1.22314 0.97376 0.95675 0.83732 0.89120 1.22129 0.99974 0.85535 0.94175 1.21082 0.92573 1.03514 1.02882 0.90196 0.87620 0.87967 0.87825 0.85128 0.91350 0.91021 0.88499 0.87905 0.87711 0.89453 0.88674 0.90724 0.87474 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.08 13.93 55.55 0.77 -20.31 16 2 C 0.08 2.16 5.47 -17.34 -0.09 2.06 16 3 Si 0.90 20.65 24.40 -169.99 -4.15 16.50 16 4 H -0.27 -6.19 6.69 56.52 0.38 -5.81 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.54 6.63 56.52 0.37 -5.16 16 7 C -0.44 -11.50 9.60 -37.73 -0.36 -11.86 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.15 16 9 C 0.09 2.11 5.14 -106.87 -0.55 1.56 16 10 C -0.19 -4.05 9.78 -38.81 -0.38 -4.43 16 11 C -0.09 -1.58 10.01 -39.73 -0.40 -1.98 16 12 C -0.22 -4.12 7.31 -38.92 -0.28 -4.40 16 13 C -0.09 -1.97 5.14 -105.04 -0.54 -2.51 16 14 C 0.57 11.12 7.27 -12.31 -0.09 11.03 16 15 O -0.54 -12.05 16.36 5.32 0.09 -11.97 16 16 N -0.61 -9.28 2.92 -174.35 -0.51 -9.79 16 17 C 0.08 1.02 5.25 -4.41 -0.02 0.99 16 18 C 0.11 1.40 6.89 -4.16 -0.03 1.37 16 19 N -0.61 -7.39 3.13 -164.44 -0.51 -7.90 16 20 C 0.51 6.39 8.02 -10.75 -0.09 6.30 16 21 O -0.54 -8.70 17.47 5.56 0.10 -8.60 16 22 C -0.15 -1.19 6.86 -26.81 -0.18 -1.38 16 23 C -0.13 -0.84 6.67 -25.33 -0.17 -1.01 16 24 C 0.11 1.18 3.88 -66.62 -0.26 0.92 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 C 0.11 1.25 5.92 -3.35 -0.02 1.23 16 27 C -0.18 -4.31 6.62 -38.44 -0.25 -4.56 16 28 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.11 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.10 1.60 6.59 -52.49 -0.35 1.25 16 32 H 0.13 1.86 4.17 -51.93 -0.22 1.65 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.15 7.71 -51.93 -0.40 0.75 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.50 7.63 -51.93 -0.40 0.10 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 41 H 0.11 1.35 6.96 -51.93 -0.36 0.99 16 42 H 0.11 2.71 4.38 -52.49 -0.23 2.48 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -31.27 335.05 -8.23 -39.50 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.35 Total: 4.19 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.72 Total: -6.67 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.25 Total: -38.00 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.18 Total: -20.57 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.15 Total: 16.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.27 -8.23 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329057908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.891 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds