Wall clock time and date at job start Fri Apr 10 2020 22:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99658 * 2 1 4 4 H 1.48500 * 109.47214 * 273.57856 * 3 2 1 5 5 H 1.48502 * 109.47373 * 33.58209 * 3 2 1 6 6 H 1.48507 * 109.46971 * 153.58410 * 3 2 1 7 7 C 1.39937 * 120.00247 * 180.27902 * 2 1 3 8 8 H 1.08003 * 119.99666 * 347.11356 * 7 2 1 9 9 C 1.41433 * 119.99941 * 167.11677 * 7 2 1 10 10 C 1.40785 * 120.17573 * 149.55716 * 9 7 2 11 11 C 1.37711 * 120.04203 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.40962 * 0.02562 * 11 10 9 13 13 C 1.39881 * 120.35989 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02716 * 180.02562 * 13 12 11 15 15 O 1.21552 * 119.99918 * 133.97969 * 14 13 12 16 16 N 1.34767 * 119.99913 * 313.98185 * 14 13 12 17 17 C 1.46290 * 120.17846 * 3.91372 * 16 14 13 18 18 C 1.52495 * 110.91662 * 232.48719 * 17 16 14 19 19 N 1.46759 * 110.63817 * 323.07093 * 18 17 16 20 20 C 1.34777 * 124.64986 * 220.97924 * 19 18 17 21 21 O 1.21282 * 124.81553 * 0.59233 * 20 19 18 22 22 C 1.51178 * 110.36357 * 180.62063 * 20 19 18 23 23 C 1.54599 * 104.14405 * 342.60241 * 22 20 19 24 24 C 1.47115 * 124.56230 * 39.83602 * 19 18 17 25 25 H 1.09003 * 110.78442 * 75.75931 * 24 19 18 26 26 C 1.47028 * 120.17689 * 183.63326 * 16 14 13 27 27 C 1.39038 * 119.95018 * 359.74513 * 13 12 11 28 28 H 0.97001 * 119.99939 * 359.71781 * 1 2 3 29 29 H 1.08005 * 119.98067 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.80018 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.82526 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.18239 * 352.84953 * 17 16 14 33 33 H 1.09001 * 109.19102 * 112.11004 * 17 16 14 34 34 H 1.08992 * 109.24596 * 83.36927 * 18 17 16 35 35 H 1.09000 * 109.24112 * 202.82061 * 18 17 16 36 36 H 1.09004 * 110.49550 * 223.93533 * 22 20 19 37 37 H 1.08994 * 110.60549 * 101.32415 * 22 20 19 38 38 H 1.09002 * 110.95341 * 266.54843 * 23 22 20 39 39 H 1.09001 * 110.98493 * 142.84472 * 23 22 20 40 40 H 1.08996 * 109.81080 * 240.68223 * 26 16 14 41 41 H 1.09001 * 109.80076 * 1.56084 * 26 16 14 42 42 H 1.07994 * 120.20596 * 180.25686 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4140 2.0902 -1.3973 5 1 1.4795 2.6297 0.7744 6 1 3.5756 1.4195 0.6229 7 6 2.0080 -1.2118 -0.0059 8 1 1.4884 -2.1364 0.1982 9 6 3.3956 -1.2259 -0.2791 10 6 4.2205 -2.2103 0.2976 11 6 5.5712 -2.2217 0.0293 12 6 6.1274 -1.2689 -0.8058 13 6 5.3237 -0.2831 -1.3879 14 6 5.9258 0.7313 -2.2798 15 8 5.3939 1.0020 -3.3388 16 7 7.0642 1.3555 -1.9186 17 6 7.7538 0.9726 -0.6865 18 6 8.0186 2.1917 0.1905 19 7 8.3551 3.3585 -0.6335 20 6 9.3179 4.2539 -0.3373 21 8 10.0335 4.2032 0.6406 22 6 9.3788 5.3308 -1.3966 23 6 8.6228 4.7209 -2.5993 24 6 7.7027 3.6962 -1.9081 25 1 6.7131 4.1196 -1.7359 26 6 7.6232 2.4208 -2.7638 27 6 3.9572 -0.2611 -1.1319 28 1 -0.4850 0.8401 0.0041 29 1 3.7937 -2.9570 0.9509 30 1 6.2004 -2.9784 0.4741 31 1 7.1879 -1.2864 -1.0094 32 1 7.1361 0.2628 -0.1361 33 1 8.7029 0.4999 -0.9391 34 1 7.1275 2.4120 0.7782 35 1 8.8487 1.9766 0.8635 36 1 10.4135 5.5444 -1.6647 37 1 8.8801 6.2366 -1.0518 38 1 9.3126 4.2263 -3.2831 39 1 8.0390 5.4804 -3.1193 40 1 8.6196 2.1383 -3.1035 41 1 6.9736 2.5900 -3.6226 42 1 3.3322 0.4956 -1.5824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329057908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:59 Heat of formation + Delta-G solvation = -52.268827 kcal Electronic energy + Delta-G solvation = -26492.700396 eV Core-core repulsion = 22822.711176 eV Total energy + Delta-G solvation = -3669.989220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11321 -40.95022 -39.17584 -38.19412 -36.54432 -35.55736 -34.06662 -32.76484 -31.99661 -30.68632 -29.47127 -27.23255 -25.93691 -24.76540 -23.70228 -23.01340 -22.27548 -21.22359 -19.95877 -19.32641 -18.14853 -17.89734 -17.48396 -17.38697 -16.95401 -16.54743 -16.53093 -16.29587 -15.61439 -15.35319 -15.01949 -14.81644 -14.75234 -14.49963 -14.39802 -14.20808 -13.90025 -13.53499 -13.44652 -13.21124 -12.80724 -12.70616 -12.64724 -12.49353 -12.34447 -12.15042 -11.96346 -11.92367 -11.69338 -11.21187 -10.95335 -10.85589 -10.36766 -9.68127 -9.55194 -9.47116 -8.95697 -6.58746 0.25963 0.71537 1.17635 1.21830 1.33147 1.47437 1.53631 1.73892 1.99960 2.10491 2.53666 3.27260 3.35315 3.43569 3.55835 3.58967 3.85191 4.01048 4.02854 4.13202 4.20558 4.32382 4.37249 4.43752 4.52628 4.59043 4.64959 4.66854 4.80199 4.83301 4.85506 4.90406 5.04816 5.13014 5.16738 5.31533 5.39533 5.42238 5.58234 5.73713 5.79374 6.00665 6.13778 6.14637 6.29556 6.59521 6.74717 6.97063 7.05278 8.12883 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004379 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.656339 B = 6392.292016 C = 6829.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.051 3.949 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.479 4.479 8 H 0.067 0.933 9 C 0.068 3.932 10 C -0.191 4.191 11 C -0.078 4.078 12 C -0.186 4.186 13 C -0.108 4.108 14 C 0.562 3.438 15 O -0.577 6.577 16 N -0.604 5.604 17 C 0.080 3.920 18 C 0.111 3.889 19 N -0.616 5.616 20 C 0.507 3.493 21 O -0.582 6.582 22 C -0.143 4.143 23 C -0.110 4.110 24 C 0.111 3.889 25 H 0.079 0.921 26 C 0.102 3.898 27 C -0.203 4.203 28 H 0.293 0.707 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.703 9.020 -3.430 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.509 4.509 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.210 4.210 11 C -0.096 4.096 12 C -0.206 4.206 13 C -0.111 4.111 14 C 0.353 3.647 15 O -0.457 6.457 16 N -0.336 5.336 17 C -0.043 4.043 18 C -0.012 4.012 19 N -0.350 5.350 20 C 0.297 3.703 21 O -0.462 6.462 22 C -0.182 4.182 23 C -0.148 4.148 24 C 0.007 3.993 25 H 0.097 0.903 26 C -0.020 4.020 27 C -0.224 4.224 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.489 9.156 -3.405 21.800 hybrid contribution -0.923 0.374 0.154 1.008 sum 18.565 9.531 -3.251 21.120 Atomic orbital electron populations 1.69671 1.08761 1.31196 1.38051 1.26639 0.95342 1.03561 0.90820 0.85662 0.80138 0.77797 0.78409 1.20697 1.20125 1.16831 1.19528 0.92670 0.95070 1.43664 0.91480 1.17809 0.93174 0.92292 0.90186 1.21488 0.94159 1.01877 1.03487 1.21089 0.94229 0.97660 0.96643 1.21039 0.99289 0.97362 1.02868 1.19583 0.93853 0.97993 0.99693 1.18855 0.79755 0.80892 0.85229 1.90700 1.62978 1.66493 1.25546 1.47814 1.23901 1.37365 1.24493 1.22425 0.99409 0.97282 0.85179 1.21671 1.01822 0.84534 0.93160 1.48637 1.36355 1.26091 1.23952 1.21838 0.77999 0.83819 0.86656 1.90693 1.45869 1.77287 1.32371 1.22336 1.05189 0.97152 0.93553 1.22646 0.97963 0.97584 0.96627 1.22422 0.97871 0.95889 0.83102 0.90289 1.22418 1.00809 0.85122 0.93697 1.21000 0.94009 1.03574 1.03775 0.89674 0.86649 0.83072 0.83534 0.86343 0.88227 0.92482 0.87780 0.86051 0.86313 0.87564 0.86245 0.87904 0.88332 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.46 13.93 21.82 0.30 -47.16 16 2 C 0.05 2.77 5.47 85.25 0.47 3.24 16 3 Si 0.95 44.80 24.40 68.60 1.67 46.47 16 4 H -0.28 -13.56 6.69 99.48 0.67 -12.89 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.25 6.63 99.48 0.66 -10.59 16 7 C -0.48 -26.60 9.60 23.47 0.23 -26.38 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C 0.07 3.36 5.14 -21.32 -0.11 3.25 16 10 C -0.19 -7.85 9.78 22.77 0.22 -7.63 16 11 C -0.08 -2.56 10.01 22.18 0.22 -2.34 16 12 C -0.19 -6.05 7.31 22.70 0.17 -5.88 16 13 C -0.11 -4.38 5.14 -20.13 -0.10 -4.48 16 14 C 0.56 21.23 7.27 86.80 0.63 21.86 16 15 O -0.58 -25.69 16.36 -3.88 -0.06 -25.76 16 16 N -0.60 -16.57 2.92 -823.81 -2.41 -18.97 16 17 C 0.08 1.77 5.25 86.25 0.45 2.22 16 18 C 0.11 2.51 6.89 86.16 0.59 3.10 16 19 N -0.62 -13.18 3.13 -792.57 -2.48 -15.66 16 20 C 0.51 11.20 8.02 87.81 0.70 11.91 16 21 O -0.58 -17.87 17.47 -3.04 -0.05 -17.93 16 22 C -0.14 -1.66 6.86 30.54 0.21 -1.45 16 23 C -0.11 -0.98 6.67 31.50 0.21 -0.77 16 24 C 0.11 1.96 3.88 45.50 0.18 2.14 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 C 0.10 2.08 5.92 86.54 0.51 2.60 16 27 C -0.20 -9.87 6.62 23.01 0.15 -9.71 16 28 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.15 3.58 6.59 -2.91 -0.02 3.56 16 32 H 0.12 2.90 4.17 -2.38 -0.01 2.89 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.22 7.71 -2.39 -0.02 2.20 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.61 7.63 -2.39 -0.02 0.60 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.58 7.82 -2.39 -0.02 1.57 16 41 H 0.10 2.27 6.96 -2.39 -0.02 2.25 16 42 H 0.08 4.41 4.38 -2.91 -0.01 4.40 16 Total: -1.00 -73.98 335.05 2.67 -71.31 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.96 Total: 16.05 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 4.73 Total: -8.35 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -4.58 Total: -81.79 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.12 Total: -43.68 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.67 Total: 46.47 kcal Total: -73.98 2.67 -71.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329057908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.038 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds