Wall clock time and date at job start Fri Apr 10 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48500 * 109.46940 * 269.99670 * 3 2 1 5 5 H 1.48497 * 109.47240 * 30.00491 * 3 2 1 6 6 H 1.48507 * 109.46598 * 150.00091 * 3 2 1 7 7 C 1.39933 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00086 * 169.74069 * 7 2 1 9 9 C 1.41433 * 120.00132 * 349.73303 * 7 2 1 10 10 C 1.40790 * 120.17655 * 150.52109 * 9 7 2 11 11 C 1.37712 * 120.03919 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41083 * 359.75932 * 11 10 9 13 13 C 1.39882 * 120.35924 * 0.51863 * 12 11 10 14 14 C 1.47883 * 120.02334 * 179.73747 * 13 12 11 15 15 O 1.21551 * 119.99842 * 211.70056 * 14 13 12 16 16 N 1.34771 * 120.00186 * 31.70472 * 14 13 12 17 17 C 1.46771 * 119.96193 * 0.89246 * 16 14 13 18 18 C 1.53897 * 109.20106 * 124.68049 * 17 16 14 19 19 N 1.47452 * 106.61266 * 47.26849 * 18 17 16 20 20 C 1.33700 * 127.55223 * 123.88479 * 19 18 17 21 21 O 1.21274 * 125.35683 * 18.54138 * 20 19 18 22 22 C 1.51482 * 109.29823 * 198.51982 * 20 19 18 23 23 C 1.54545 * 104.02123 * 335.18903 * 22 20 19 24 24 C 1.47749 * 121.30076 * 304.69068 * 19 18 17 25 25 H 1.08994 * 110.42680 * 296.84703 * 24 19 18 26 26 C 1.47188 * 119.95865 * 180.87419 * 16 14 13 27 27 C 1.39033 * 119.94536 * 359.46313 * 13 12 11 28 28 H 0.97009 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.98239 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.79543 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.82145 * 180.25824 * 12 11 10 32 32 H 1.08997 * 109.52058 * 4.76470 * 17 16 14 33 33 H 1.09000 * 109.56350 * 244.62265 * 17 16 14 34 34 H 1.09000 * 110.01850 * 288.00229 * 18 17 16 35 35 H 1.08999 * 110.02555 * 166.54625 * 18 17 16 36 36 H 1.08998 * 110.52121 * 216.55565 * 22 20 19 37 37 H 1.08999 * 110.63533 * 93.87823 * 22 20 19 38 38 H 1.08992 * 110.71227 * 262.81834 * 23 22 20 39 39 H 1.08998 * 110.70541 * 139.56950 * 23 22 20 40 40 H 1.09000 * 109.79680 * 355.80162 * 26 16 14 41 41 H 1.09003 * 109.79656 * 116.64588 * 26 16 14 42 42 H 1.08005 * 120.20009 * 180.24665 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0749 -1.2193 -0.1671 9 6 1.3177 -2.4270 0.2172 10 6 1.7902 -3.6221 -0.3579 11 6 1.1156 -4.8036 -0.1444 12 6 -0.0253 -4.8273 0.6383 13 6 -0.5129 -3.6489 1.2131 14 6 -1.7361 -3.6818 2.0435 15 8 -2.4793 -2.7203 2.0691 16 7 -2.0268 -4.7778 2.7720 17 6 -1.1187 -5.9307 2.7559 18 6 -0.7083 -6.2720 4.1994 19 7 -1.9474 -6.2829 4.9986 20 6 -2.4235 -7.2809 5.7502 21 8 -1.7773 -8.2232 6.1566 22 6 -3.8970 -7.0494 6.0147 23 6 -4.0671 -5.5199 5.8730 24 6 -2.8499 -5.1136 5.0315 25 1 -2.3423 -4.2534 5.4678 26 6 -3.2544 -4.8169 3.5832 27 6 0.1566 -2.4478 1.0077 28 1 -0.4851 0.8401 0.0004 29 1 2.6821 -3.6123 -0.9668 30 1 1.4818 -5.7181 -0.5871 31 1 -0.5445 -5.7600 0.8028 32 1 -0.2306 -5.6868 2.1729 33 1 -1.6238 -6.7870 2.3089 34 1 -0.0243 -5.5143 4.5819 35 1 -0.2352 -7.2534 4.2308 36 1 -4.1594 -7.3713 7.0225 37 1 -4.5064 -7.5715 5.2771 38 1 -4.0390 -5.0368 6.8496 39 1 -4.9936 -5.2820 5.3505 40 1 -3.7617 -3.8535 3.5316 41 1 -3.9146 -5.6026 3.2159 42 1 -0.2140 -1.5363 1.4529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329057914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:02 Heat of formation + Delta-G solvation = -15.823924 kcal Electronic energy + Delta-G solvation = -26190.800337 eV Core-core repulsion = 22522.391486 eV Total energy + Delta-G solvation = -3668.408851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02956 -39.40750 -37.36188 -36.81622 -35.24780 -33.74661 -32.91332 -30.92487 -29.58859 -29.31791 -28.27212 -25.63601 -24.84762 -23.57817 -22.05662 -21.36050 -20.94612 -19.87969 -18.69210 -17.58251 -16.60800 -16.37274 -16.15358 -15.82681 -15.39614 -15.11734 -15.04354 -14.86254 -14.33976 -13.78040 -13.65621 -13.38099 -13.25585 -12.95011 -12.77650 -12.64750 -12.52128 -12.18160 -11.78469 -11.72738 -11.47209 -11.38027 -11.19553 -11.15796 -10.94708 -10.76941 -10.39308 -10.15180 -9.89618 -9.72674 -9.32238 -9.23524 -8.98652 -8.23586 -7.69295 -7.51943 -6.79853 -4.50488 2.15570 2.42535 2.70896 2.78181 3.04270 3.05512 3.09188 3.29935 3.63823 3.88025 4.14095 4.30890 4.48232 4.53824 4.73118 4.85990 4.97173 5.09371 5.16243 5.30737 5.40073 5.42768 5.49477 5.56685 5.59942 5.71174 5.79229 5.83310 5.92410 6.02550 6.17653 6.37892 6.59243 6.73391 6.91162 6.92657 7.06253 7.14360 7.29795 7.54169 7.65281 7.76235 7.90693 8.05322 8.08745 8.42573 8.71833 8.74265 8.77566 10.13439 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.003464 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.423821 B = 8081.633303 C = 8694.268946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.070 3.930 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.097 4.097 12 C -0.236 4.236 13 C -0.124 4.124 14 C 0.566 3.434 15 O -0.539 6.539 16 N -0.615 5.615 17 C 0.058 3.942 18 C 0.112 3.888 19 N -0.619 5.619 20 C 0.521 3.479 21 O -0.537 6.537 22 C -0.154 4.154 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.090 0.910 26 C 0.105 3.895 27 C -0.091 4.091 28 H 0.284 0.716 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 -8.581 8.313 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.100 3.900 10 C -0.227 4.227 11 C -0.115 4.115 12 C -0.256 4.256 13 C -0.127 4.127 14 C 0.359 3.641 15 O -0.416 6.416 16 N -0.350 5.350 17 C -0.065 4.065 18 C -0.009 4.009 19 N -0.354 5.354 20 C 0.309 3.691 21 O -0.414 6.414 22 C -0.194 4.194 23 C -0.161 4.161 24 C 0.009 3.991 25 H 0.108 0.892 26 C -0.019 4.019 27 C -0.111 4.111 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.168 0.832 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.561 -8.401 8.487 13.625 hybrid contribution 0.265 0.714 -0.134 0.774 sum -6.296 -7.687 8.353 12.980 Atomic orbital electron populations 1.69767 1.07356 1.29656 1.34589 1.25960 0.94894 1.01469 0.92467 0.86237 0.80380 0.80442 0.79264 1.19417 1.20021 1.18470 1.19592 0.95929 0.90254 1.43194 0.90122 1.17606 0.91349 0.92519 0.88529 1.21182 1.02824 0.93441 1.05252 1.20496 0.95884 0.96800 0.98308 1.20725 1.00954 0.95828 1.08046 1.19417 0.95539 0.95655 1.02137 1.19030 0.85903 0.80826 0.78390 1.90712 1.50910 1.34760 1.65188 1.47902 1.23075 1.16595 1.47396 1.23385 0.97875 0.88535 0.96697 1.22335 0.85138 1.03270 0.90205 1.48658 1.23528 1.15690 1.47546 1.20720 0.89657 0.81541 0.77150 1.90714 1.65093 1.33429 1.52157 1.22390 0.94673 0.97475 1.04896 1.22298 0.98006 0.94838 1.00990 1.22241 0.91029 0.89186 0.96656 0.89193 1.21977 0.87483 1.03752 0.88641 1.21584 0.96396 0.95174 0.97934 0.90455 0.88500 0.88674 0.87194 0.83221 0.91633 0.90480 0.88527 0.88234 0.87769 0.89514 0.88783 0.87776 0.91323 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.86 55.55 0.60 -19.86 16 2 C 0.07 1.73 5.26 -17.35 -0.09 1.64 16 3 Si 0.91 18.31 29.57 -169.99 -5.03 13.28 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.68 9.06 -37.73 -0.34 -12.02 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 9 C 0.10 2.59 5.54 -106.87 -0.59 2.00 16 10 C -0.21 -4.67 9.78 -38.81 -0.38 -5.05 16 11 C -0.10 -1.92 10.01 -39.72 -0.40 -2.32 16 12 C -0.24 -4.61 7.40 -38.92 -0.29 -4.89 16 13 C -0.12 -2.76 5.49 -105.04 -0.58 -3.34 16 14 C 0.57 11.71 7.43 -12.31 -0.09 11.61 16 15 O -0.54 -12.81 16.09 5.32 0.09 -12.73 16 16 N -0.62 -9.71 2.93 -173.30 -0.51 -10.22 16 17 C 0.06 0.78 4.99 -3.43 -0.02 0.76 16 18 C 0.11 1.41 7.10 -3.05 -0.02 1.38 16 19 N -0.62 -7.58 2.92 -163.42 -0.48 -8.06 16 20 C 0.52 6.65 8.02 -11.08 -0.09 6.56 16 21 O -0.54 -8.92 17.82 5.56 0.10 -8.82 16 22 C -0.15 -1.28 6.92 -26.69 -0.18 -1.46 16 23 C -0.12 -0.89 6.68 -25.69 -0.17 -1.07 16 24 C 0.11 1.22 3.77 -66.87 -0.25 0.96 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 C 0.11 1.33 5.83 -3.53 -0.02 1.31 16 27 C -0.09 -2.30 8.20 -38.44 -0.32 -2.61 16 28 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.81 5.32 -52.48 -0.28 1.53 16 32 H 0.15 2.21 3.51 -55.56 -0.19 2.01 16 33 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.14 7.99 -51.93 -0.42 0.73 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.53 7.80 -51.93 -0.41 0.12 16 40 H 0.10 1.42 6.95 -51.93 -0.36 1.06 16 41 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.13 3.60 6.14 -52.48 -0.32 3.28 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -31.15 339.94 -9.26 -40.41 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.33 Total: 7.41 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.83 Total: -6.53 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.38 Total: -38.14 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.18 Total: -21.54 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.15 -9.26 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329057914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.585 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds