Wall clock time and date at job start Fri Apr 10 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50688 * 109.47491 * 2 1 4 4 O 1.34261 * 126.52906 * 270.02712 * 3 2 1 5 5 C 1.34050 * 108.23012 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47639 * 359.61586 * 6 5 4 8 8 C 1.47424 * 126.45042 * 180.15608 * 7 6 5 9 9 O 1.21616 * 120.00216 * 180.26352 * 8 7 6 10 10 N 1.34777 * 119.99758 * 0.26735 * 8 7 6 11 11 C 1.46496 * 119.99954 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47454 * 324.99763 * 11 10 8 13 13 C 1.53000 * 109.47092 * 204.99945 * 11 10 8 14 14 C 1.50696 * 109.47432 * 65.00067 * 13 11 10 15 15 H 1.08008 * 119.99943 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00389 * 180.02562 * 14 13 11 17 17 N 1.31508 * 119.99742 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99804 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47068 * 90.00291 * 18 16 14 20 20 H 1.48496 * 109.47027 * 210.00283 * 18 16 14 21 21 H 1.48498 * 109.47185 * 330.00222 * 18 16 14 22 22 C 1.50703 * 109.47414 * 84.99902 * 11 10 8 23 23 C 1.38237 * 119.99766 * 39.72471 * 22 11 10 24 24 C 1.38235 * 120.00062 * 179.79092 * 23 22 11 25 25 C 1.38235 * 119.99641 * 0.44063 * 24 23 22 26 26 C 1.38241 * 120.00151 * 359.81589 * 25 24 23 27 27 C 1.38226 * 119.99988 * 359.97163 * 26 25 24 28 28 H 1.08998 * 109.46917 * 59.99448 * 1 2 3 29 29 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46812 * 300.00172 * 1 2 3 31 31 H 1.09009 * 109.46977 * 239.99633 * 2 1 3 32 32 H 1.08998 * 109.46917 * 120.00552 * 2 1 3 33 33 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47408 * 185.00026 * 13 11 10 36 36 H 1.08996 * 109.46980 * 304.99634 * 13 11 10 37 37 H 0.97009 * 119.99658 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.99753 * 0.02562 * 23 22 11 39 39 H 1.07994 * 120.00088 * 180.27299 * 24 23 22 40 40 H 1.08003 * 120.00022 * 179.83381 * 25 24 23 41 41 H 1.08003 * 119.99624 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.00130 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2984 2.1743 -1.0789 5 6 2.7223 3.3743 -0.6580 6 7 2.7346 3.3927 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1589 1.7772 2.5032 9 8 1.7642 0.6598 2.7762 10 7 2.4651 2.6434 3.4893 11 6 2.3230 2.2387 4.8901 12 1 1.4639 1.5755 4.9914 13 6 2.1148 3.4794 5.7608 14 6 0.8056 4.1326 5.3999 15 1 0.1843 3.7057 4.6264 16 6 0.4013 5.2757 6.0563 17 7 -0.7410 5.8459 5.7408 18 14 1.4762 6.0144 7.3936 19 1 2.4162 6.9925 6.7892 20 1 0.6201 6.7030 8.3927 21 1 2.2467 4.9352 8.0619 22 6 3.5696 1.5172 5.3335 23 6 4.8109 1.9654 4.9220 24 6 5.9546 1.3062 5.3322 25 6 5.8565 0.1935 6.1466 26 6 4.6149 -0.2578 6.5538 27 6 3.4715 0.4040 6.1471 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0124 4.1947 -1.2978 34 1 2.7802 3.5346 3.2716 35 1 2.0979 3.1877 6.8110 36 1 2.9304 4.1826 5.5923 37 1 -1.0256 6.6500 6.2029 38 1 4.8872 2.8327 4.2830 39 1 6.9246 1.6589 5.0143 40 1 6.7500 -0.3231 6.4649 41 1 4.5384 -1.1269 7.1904 42 1 2.5015 0.0512 6.4649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269599607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:11 Heat of formation + Delta-G solvation = 0.660762 kcal Electronic energy + Delta-G solvation = -25954.317874 eV Core-core repulsion = 22286.623853 eV Total energy + Delta-G solvation = -3667.694021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.36791 -39.62105 -38.39274 -35.38960 -34.76471 -34.02543 -32.61100 -31.21444 -30.54060 -29.39216 -29.03516 -25.49897 -24.14552 -23.43972 -22.32693 -21.75652 -21.53758 -20.21473 -19.75051 -17.94126 -17.10689 -16.75306 -16.37953 -16.04013 -15.60181 -15.02043 -14.93456 -14.52273 -14.29232 -14.12811 -14.03830 -13.44670 -13.20380 -13.08153 -12.91817 -12.60616 -12.55559 -12.37865 -11.93996 -11.73818 -11.28975 -11.25948 -11.21416 -11.05688 -10.74272 -10.63758 -10.49787 -10.22580 -9.86170 -9.63297 -9.30644 -8.89892 -8.62415 -8.58375 -8.45364 -8.29705 -6.08140 -4.07665 1.21241 1.68060 1.71773 2.20394 2.59594 3.27793 3.36140 3.39259 3.58462 3.69150 4.10181 4.20759 4.40822 4.62768 4.95423 5.10986 5.17639 5.19782 5.21682 5.26154 5.29157 5.33413 5.45785 5.56108 5.80711 5.81176 5.82772 5.84303 6.01766 6.09003 6.20578 6.22339 6.24650 6.31945 6.42940 6.74781 6.77099 6.81055 6.94191 7.06224 7.30441 7.32731 7.52512 7.67302 8.11594 8.46439 8.67511 8.97492 9.52527 11.04750 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.005411 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.119191 B = 5173.179042 C = 7042.099433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.035 3.965 4 O -0.203 6.203 5 C 0.167 3.833 6 N -0.456 5.456 7 C -0.064 4.064 8 C 0.599 3.401 9 O -0.543 6.543 10 N -0.680 5.680 11 C 0.194 3.806 12 H 0.095 0.905 13 C -0.014 4.014 14 C -0.520 4.520 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.077 4.077 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.253 0.747 34 H 0.410 0.590 35 H 0.035 0.965 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -9.927 -10.028 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.021 4.021 4 O -0.090 6.090 5 C -0.062 4.062 6 N -0.185 5.185 7 C -0.184 4.184 8 C 0.384 3.616 9 O -0.421 6.421 10 N -0.328 5.328 11 C 0.090 3.910 12 H 0.113 0.887 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.269 0.731 34 H 0.246 0.754 35 H 0.053 0.947 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.056 -10.030 -9.398 17.031 hybrid contribution 0.528 0.839 0.082 0.995 sum 10.584 -9.191 -9.316 16.831 Atomic orbital electron populations 1.21710 0.93101 1.02720 1.02698 1.20345 0.97119 0.85458 1.05093 1.23767 0.99292 0.95644 0.83377 1.84341 1.64024 1.24199 1.36400 1.27977 0.99714 0.87108 0.91375 1.70781 1.16691 1.21057 1.09972 1.21655 1.09577 0.91173 0.95964 1.16685 0.77682 0.84736 0.82477 1.90735 1.47902 1.20309 1.83172 1.45715 1.65036 1.16662 1.05419 1.20030 0.93436 0.97690 0.79834 0.88737 1.19880 0.98224 0.91715 0.95313 1.21001 1.03216 1.09940 1.21581 0.90656 1.24974 0.94854 0.96583 0.96653 1.69909 1.21109 1.20479 1.42116 0.86854 0.80764 0.79777 0.82391 1.20230 1.21326 1.18917 1.20562 0.95735 0.95113 0.96450 1.20965 0.92005 0.99810 0.99889 1.21052 0.98062 0.96368 0.98818 1.21021 0.97284 0.97427 0.99370 1.21055 0.92635 0.99956 1.00438 1.21032 0.98667 0.94953 0.97805 0.92778 0.91225 0.91385 0.90163 0.86477 0.73141 0.75440 0.94653 0.96232 0.92676 0.86443 0.86676 0.86766 0.86481 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.90 37.16 0.37 -1.31 16 2 C -0.04 -0.52 5.93 -27.89 -0.17 -0.68 16 3 C 0.04 0.51 6.69 -35.08 -0.23 0.27 16 4 O -0.20 -2.54 10.73 6.50 0.07 -2.47 16 5 C 0.17 1.92 13.19 51.96 0.69 2.61 16 6 N -0.46 -7.13 11.06 -11.48 -0.13 -7.26 16 7 C -0.06 -1.08 6.99 -83.02 -0.58 -1.66 16 8 C 0.60 11.49 7.77 -12.52 -0.10 11.40 16 9 O -0.54 -11.02 14.46 5.26 0.08 -10.94 16 10 N -0.68 -13.27 4.02 -56.01 -0.22 -13.49 16 11 C 0.19 3.94 2.12 -69.08 -0.15 3.79 16 12 H 0.09 2.07 7.44 -51.93 -0.39 1.68 16 13 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 14 C -0.52 -14.25 9.39 -34.44 -0.32 -14.58 16 15 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 18 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 22 C -0.08 -1.40 4.92 -104.62 -0.51 -1.91 16 23 C -0.11 -1.79 9.33 -39.58 -0.37 -2.16 16 24 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 27 C -0.11 -1.75 9.67 -39.59 -0.38 -2.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.12 1.57 6.48 -51.93 -0.34 1.23 16 33 H 0.25 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.41 7.91 8.33 -40.82 -0.34 7.57 16 35 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 36 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 1.88 7.71 -52.49 -0.40 1.47 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -33.17 361.37 -7.43 -40.60 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.62 Total: 9.38 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.15 Total: -11.39 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.42 Total: -47.19 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.15 Total: -13.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.17 -7.43 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269599607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds