Wall clock time and date at job start Fri Apr 10 2020 22:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46888 * 2 1 4 4 C 1.38285 * 119.93345 * 90.00099 * 3 2 1 5 5 C 1.38109 * 120.07205 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92919 * 0.02562 * 5 4 3 7 7 N 1.39926 * 120.06859 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00180 * 35.08258 * 7 6 5 9 9 O 1.21294 * 120.00038 * 355.37341 * 8 7 6 10 10 C 1.50698 * 120.00027 * 175.36980 * 8 7 6 11 11 H 1.08999 * 109.47174 * 60.00302 * 10 8 7 12 12 C 1.47203 * 109.47202 * 300.00235 * 10 8 7 13 13 N 8.88063 * 121.74697 * 349.92148 * 2 1 3 14 14 C 1.50703 * 109.47301 * 180.02562 * 10 8 7 15 15 O 1.20756 * 119.99780 * 30.00283 * 14 10 8 16 16 C 1.50700 * 119.99877 * 210.00255 * 14 10 8 17 17 C 1.53005 * 109.46825 * 180.02562 * 16 14 10 18 18 C 1.50700 * 109.46825 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00509 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99765 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99964 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99934 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47476 * 120.00054 * 22 20 18 25 25 H 1.48505 * 109.47044 * 240.00108 * 22 20 18 26 26 C 1.38872 * 119.85864 * 0.25673 * 6 5 4 27 27 C 1.38110 * 119.93062 * 359.46948 * 26 6 5 28 28 H 1.09005 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47663 * 300.00110 * 1 2 3 30 30 H 1.09000 * 109.47636 * 60.00315 * 1 2 3 31 31 H 1.08998 * 109.47663 * 239.99890 * 2 1 3 32 32 H 1.09003 * 109.47147 * 119.99585 * 2 1 3 33 33 H 1.08000 * 119.96059 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.03806 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99885 * 215.08281 * 7 6 5 36 36 H 1.09002 * 109.47334 * 299.99378 * 16 14 10 37 37 H 1.08996 * 109.47311 * 60.00127 * 16 14 10 38 38 H 1.09007 * 109.46937 * 299.99862 * 17 16 14 39 39 H 1.08996 * 109.47225 * 59.99888 * 17 16 14 40 40 H 0.96998 * 119.99908 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03485 * 179.75217 * 26 6 5 42 42 H 1.08000 * 119.97120 * 180.27420 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0714 1.1984 5 6 2.7220 3.3737 1.2017 6 6 2.9529 4.0301 -0.0001 7 7 3.4183 5.3497 -0.0002 8 6 4.2754 5.7620 0.9546 9 8 4.5782 5.0154 1.8613 10 6 4.8578 7.1507 0.8957 11 1 4.0523 7.8842 0.9304 12 6 5.6151 7.3125 -0.3561 13 7 6.2027 7.4354 -1.3216 14 6 5.7789 7.3594 2.0701 15 8 6.3737 6.4219 2.5449 16 6 5.9576 8.7381 2.6518 17 6 6.9379 8.6735 3.8248 18 6 7.1171 10.0523 4.4060 19 1 6.5854 10.8908 3.9812 20 6 7.9599 10.2433 5.4805 21 7 8.6070 9.2221 5.9982 22 14 8.1826 11.9524 6.2005 23 1 7.3503 12.9211 5.4429 24 1 7.7642 11.9477 7.6253 25 1 9.6110 12.3473 6.1055 26 6 2.7154 3.3760 -1.2019 27 6 2.2610 2.0718 -1.1985 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0821 1.5605 2.1327 34 1 2.9011 3.8814 2.1379 35 1 3.1239 5.9678 -0.6874 36 1 6.3510 9.4072 1.8865 37 1 4.9956 9.1122 3.0019 38 1 6.5449 8.0043 4.5902 39 1 7.8998 8.2995 3.4742 40 1 9.2002 9.3565 6.7538 41 1 2.8901 3.8851 -2.1382 42 1 2.0802 1.5610 -2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813059607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:22 Heat of formation + Delta-G solvation = -27.141189 kcal Electronic energy + Delta-G solvation = -24362.504750 eV Core-core repulsion = 20693.605146 eV Total energy + Delta-G solvation = -3668.899604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16352 -39.63984 -38.38786 -36.75960 -35.59741 -33.59926 -33.44435 -32.01528 -31.15943 -30.84252 -28.63611 -25.95151 -24.26419 -23.21382 -22.37048 -21.55100 -20.82530 -19.76160 -18.84061 -17.81676 -17.19653 -16.59097 -15.96262 -15.58862 -15.45712 -15.29196 -14.53271 -14.49261 -14.38760 -14.20941 -13.97466 -13.82430 -13.69078 -13.45217 -13.17436 -13.03032 -12.79963 -12.47681 -12.27476 -12.23452 -12.12962 -11.65405 -11.36438 -11.22020 -11.15536 -10.98679 -10.63584 -10.51339 -10.14374 -10.06679 -9.82199 -9.24072 -9.12930 -9.02160 -8.38150 -8.28708 -6.01258 -4.06152 0.99302 1.20827 1.91964 1.95224 2.38599 2.57024 2.75194 3.30183 3.37645 3.40368 3.52837 3.65404 4.05069 4.19808 4.45116 4.50330 4.56805 4.71095 4.77515 4.86151 5.04687 5.17169 5.22079 5.30706 5.34182 5.36036 5.58327 5.58852 5.66908 5.81508 5.86074 6.06127 6.06526 6.09028 6.11817 6.25606 6.42845 6.79329 6.81298 6.96979 7.10617 7.64205 7.70426 7.73654 7.82214 7.97950 8.33923 9.01511 9.58155 11.09654 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.002348 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.504551 B =11923.658885 C =12704.169295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.098 4.098 4 C -0.098 4.098 5 C -0.115 4.115 6 C 0.141 3.859 7 N -0.673 5.673 8 C 0.526 3.474 9 O -0.466 6.466 10 C -0.065 4.065 11 H 0.167 0.833 12 C 0.214 3.786 13 N -0.390 5.390 14 C 0.360 3.640 15 O -0.388 6.388 16 C -0.152 4.152 17 C 0.029 3.971 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.141 4.141 27 C -0.101 4.101 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.124 0.876 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -13.045 -15.465 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.048 3.952 7 N -0.319 5.319 8 C 0.309 3.691 9 O -0.334 6.334 10 C -0.091 4.091 11 H 0.184 0.816 12 C -0.105 4.105 13 N -0.066 5.066 14 C 0.227 3.773 15 O -0.254 6.254 16 C -0.189 4.189 17 C -0.008 4.008 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.161 4.161 27 C -0.119 4.119 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.247 0.753 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.369 -13.944 -15.807 27.313 hybrid contribution -0.221 1.383 0.296 1.432 sum -17.590 -12.561 -15.511 26.604 Atomic orbital electron populations 1.21752 0.94781 1.01620 1.02230 1.20520 0.96096 0.92636 1.02867 1.19910 1.00358 0.96491 0.93144 1.20963 0.98701 0.94296 0.97722 1.21343 0.98643 0.95556 0.97967 1.17707 0.98706 0.84562 0.94250 1.43454 1.46098 1.11210 1.31170 1.19771 0.78926 0.87843 0.82576 1.90882 1.56934 1.53365 1.32262 1.19853 1.00302 0.98430 0.90502 0.81634 1.27656 0.94681 0.94695 0.93439 1.81301 1.07275 1.06938 1.11124 1.24465 0.78731 0.93161 0.80922 1.90509 1.36463 1.43843 1.54566 1.22270 1.03908 0.91144 1.01614 1.18996 0.93435 0.97469 0.90930 1.21208 1.26632 0.93760 1.15015 0.92353 1.25037 0.95711 0.96840 0.96839 1.69997 1.28538 1.30020 1.24143 0.86524 0.77915 0.84446 0.79011 1.19698 1.20975 1.21035 1.20869 1.03595 0.95306 0.96356 1.20775 0.99610 0.93895 0.97655 0.92496 0.92480 0.92619 0.91144 0.90989 0.85663 0.84012 0.75275 0.89264 0.88831 0.95529 0.95866 0.92912 0.85765 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.15 0.37 -0.48 16 2 C -0.08 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.10 -0.87 5.14 -104.58 -0.54 -1.41 16 4 C -0.10 -0.99 9.69 -39.61 -0.38 -1.38 16 5 C -0.12 -1.36 8.70 -39.39 -0.34 -1.70 16 6 C 0.14 1.52 6.30 -83.69 -0.53 0.99 16 7 N -0.67 -6.42 5.21 -9.86 -0.05 -6.47 16 8 C 0.53 6.66 6.91 -10.99 -0.08 6.58 16 9 O -0.47 -7.96 12.09 -17.83 -0.22 -8.17 16 10 C -0.07 -0.74 2.85 -95.71 -0.27 -1.01 16 11 H 0.17 0.97 8.12 -51.93 -0.42 0.55 16 12 C 0.21 2.68 14.45 -20.73 -0.30 2.38 16 13 N -0.39 -5.64 18.54 42.19 0.78 -4.86 16 14 C 0.36 6.03 6.05 -29.03 -0.18 5.85 16 15 O -0.39 -8.35 14.51 -17.38 -0.25 -8.61 16 16 C -0.15 -2.72 5.56 -27.88 -0.16 -2.88 16 17 C 0.03 0.73 4.26 -27.88 -0.12 0.61 16 18 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C -0.14 -1.27 9.97 -39.39 -0.39 -1.66 16 27 C -0.10 -0.85 9.69 -39.61 -0.38 -1.24 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.88 6.23 -52.49 -0.33 1.55 16 35 H 0.41 2.48 8.76 -40.82 -0.36 2.12 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -35.99 370.99 -8.02 -44.01 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.71 Total: -2.34 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.88 Total: -9.24 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.47 Total: -37.46 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.47 Total: -16.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.99 -8.02 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.870 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds