Wall clock time and date at job start Fri Apr 10 2020 22:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48499 * 109.46925 * 270.00198 * 3 2 1 5 5 H 1.48503 * 109.47092 * 29.99833 * 3 2 1 6 6 H 1.48495 * 109.47020 * 149.99663 * 3 2 1 7 7 C 1.38807 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99498 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00184 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00127 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46154 * 155.00495 * 10 9 7 12 12 C 1.53198 * 109.31892 * 181.38556 * 11 10 9 13 13 N 1.46925 * 108.77277 * 305.36534 * 12 11 10 14 14 C 1.34776 * 120.63127 * 233.58036 * 13 12 11 15 15 O 1.21639 * 119.99964 * 359.67443 * 14 13 12 16 16 C 1.47067 * 119.99945 * 179.67547 * 14 13 12 17 17 C 1.35903 * 125.42130 * 210.10578 * 16 14 13 18 18 C 1.41432 * 107.67272 * 179.90634 * 17 16 14 19 19 C 1.39845 * 134.34768 * 180.02562 * 18 17 16 20 20 N 1.31561 * 120.03925 * 180.33114 * 19 18 17 21 21 C 1.32361 * 122.32407 * 0.02562 * 20 19 18 22 22 C 1.36646 * 121.64309 * 359.97438 * 21 20 19 23 23 C 1.39429 * 119.01124 * 359.97438 * 22 21 20 24 24 N 1.36883 * 134.32429 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.58592 * 0.04688 * 24 23 22 26 26 C 1.46934 * 118.73691 * 53.85770 * 13 12 11 27 27 C 1.53048 * 109.46402 * 275.07247 * 10 9 7 28 28 H 0.97003 * 120.00106 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99528 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.44982 * 35.03732 * 10 9 7 31 31 H 1.09006 * 109.49900 * 61.43264 * 11 10 9 32 32 H 1.09002 * 109.52592 * 301.35565 * 11 10 9 33 33 H 1.08991 * 109.59065 * 185.57699 * 12 11 10 34 34 H 1.09000 * 109.69839 * 65.21797 * 12 11 10 35 35 H 1.07997 * 126.16394 * 0.02562 * 17 16 14 36 36 H 1.07992 * 119.98052 * 0.33076 * 19 18 17 37 37 H 1.07998 * 119.18090 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.49005 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.58475 * 65.92950 * 26 13 12 40 40 H 1.09004 * 109.58429 * 186.35042 * 26 13 12 41 41 H 1.09005 * 109.49413 * 298.56774 * 27 10 9 42 42 H 1.09002 * 109.49536 * 58.65901 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.4994 -2.2591 -0.6093 12 6 6.2496 -3.5946 -0.6383 13 7 6.2670 -4.1566 0.7191 14 6 7.4293 -4.5175 1.2980 15 8 8.4767 -4.3847 0.6939 16 6 7.4314 -5.0720 2.6602 17 6 8.4411 -4.9448 3.5609 18 6 8.0494 -5.6160 4.7426 19 6 8.6465 -5.8300 5.9889 20 7 8.0140 -6.5217 6.9121 21 6 6.8114 -7.0366 6.7110 22 6 6.1527 -6.8776 5.5243 23 6 6.7658 -6.1538 4.5024 24 7 6.4081 -5.8092 3.2269 25 1 5.5741 -6.0451 2.7913 26 6 4.9926 -4.3233 1.4311 27 6 4.2572 -2.9746 1.4390 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3620 -0.0004 30 1 3.5647 -3.2065 -0.5879 31 1 6.0566 -1.5419 -0.0065 32 1 5.3961 -1.8778 -1.6252 33 1 7.2718 -3.4322 -0.9797 34 1 5.7442 -4.2853 -1.3133 35 1 9.3736 -4.4233 3.4035 36 1 9.6273 -5.4272 6.1937 37 1 6.3388 -7.5964 7.5045 38 1 5.1720 -7.3061 5.3802 39 1 4.3847 -5.0712 0.9219 40 1 5.1853 -4.6420 2.4556 41 1 4.8261 -2.2506 2.0225 42 1 3.2691 -3.1028 1.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996728772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:06 Heat of formation + Delta-G solvation = 67.963430 kcal Electronic energy + Delta-G solvation = -25585.993505 eV Core-core repulsion = 21953.510698 eV Total energy + Delta-G solvation = -3632.482807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28416 -40.15057 -38.23144 -37.60981 -34.85536 -32.76333 -32.33264 -31.53886 -30.57873 -30.06849 -29.44284 -25.82350 -24.48292 -23.43871 -22.91493 -22.40283 -21.42741 -20.60818 -19.81570 -18.23237 -18.05614 -17.51358 -16.36768 -16.02091 -15.62314 -15.55612 -15.07264 -14.81551 -14.66844 -14.37605 -14.12793 -13.97835 -13.64970 -13.55439 -13.35418 -13.22570 -12.92922 -12.50761 -12.25140 -12.04925 -11.78889 -11.25037 -11.11754 -11.04194 -10.73340 -10.42474 -10.36645 -10.25774 -10.03346 -9.82562 -9.69390 -9.14821 -9.03939 -8.85264 -8.26297 -7.40319 -5.87799 -3.24579 0.36033 1.22605 1.75731 2.40453 2.63761 3.06877 3.30367 3.33500 3.38914 3.64637 4.08253 4.22638 4.28254 4.49729 4.61789 4.67722 4.77827 4.91391 4.94917 5.03962 5.07183 5.14560 5.27914 5.32816 5.41727 5.49572 5.52557 5.62762 5.68454 5.72925 5.91615 5.98104 6.00514 6.10654 6.19312 6.20535 6.32477 6.50028 6.60579 6.76328 6.87175 7.12991 7.79963 7.83089 7.86249 8.31028 9.08595 9.81453 10.00571 11.30154 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.003154 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.889633 B = 8875.165728 C = 9717.746659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.184 3.816 11 C -0.144 4.144 12 C 0.117 3.883 13 N -0.600 5.600 14 C 0.582 3.418 15 O -0.526 6.526 16 C 0.028 3.972 17 C -0.097 4.097 18 C -0.172 4.172 19 C 0.176 3.824 20 N -0.507 5.507 21 C 0.104 3.896 22 C -0.179 4.179 23 C 0.135 3.865 24 N -0.570 5.570 25 H 0.426 0.574 26 C 0.084 3.916 27 C -0.149 4.149 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.015 -14.266 7.951 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.074 3.926 11 C -0.183 4.183 12 C -0.005 4.005 13 N -0.332 5.332 14 C 0.369 3.631 15 O -0.402 6.402 16 C -0.081 4.081 17 C -0.125 4.125 18 C -0.179 4.179 19 C 0.008 3.992 20 N -0.216 5.216 21 C -0.044 4.044 22 C -0.202 4.202 23 C 0.018 3.982 24 N -0.180 5.180 25 H 0.271 0.729 26 C -0.039 4.039 27 C -0.190 4.190 28 H 0.071 0.929 29 H 0.194 0.806 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.471 -14.431 8.284 22.721 hybrid contribution -0.607 1.300 -0.931 1.711 sum 14.865 -13.130 7.353 21.152 Atomic orbital electron populations 1.69700 1.05129 1.25990 1.57080 1.24681 0.95227 0.97289 1.01732 0.86559 0.79196 0.84936 0.77858 1.20982 1.21677 1.20357 1.19036 0.80467 0.94688 1.43623 0.89202 1.42786 1.04046 1.01903 1.90147 1.20129 0.90292 0.89599 0.92580 1.22265 0.97139 0.96345 1.02516 1.21691 1.02460 0.94898 0.81435 1.48140 1.06151 1.61738 1.17183 1.17221 0.83967 0.78376 0.83575 1.90840 1.30967 1.55636 1.62751 1.20239 0.90168 1.02638 0.95038 1.20819 0.98947 1.01985 0.90764 1.19220 0.96031 1.05455 0.97238 1.22518 0.98534 0.91706 0.86441 1.67665 1.09797 1.11037 1.33124 1.22103 0.90621 0.96454 0.95242 1.20828 1.02335 1.03742 0.93276 1.18454 0.95240 0.98406 0.86136 1.42709 1.17887 1.46018 1.11374 0.72942 1.22470 0.84361 1.00414 0.96696 1.22716 1.00432 0.94133 1.01734 0.92945 0.80552 0.92403 0.91725 0.90083 0.88841 0.90899 0.82201 0.82153 0.82520 0.84808 0.90640 0.89967 0.92009 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 N -0.75 -16.46 4.92 -53.39 -0.26 -16.72 16 10 C 0.18 3.12 2.73 -67.89 -0.19 2.94 16 11 C -0.14 -2.04 5.55 -26.61 -0.15 -2.18 16 12 C 0.12 1.43 6.43 -3.71 -0.02 1.41 16 13 N -0.60 -7.32 2.97 -173.90 -0.52 -7.84 16 14 C 0.58 7.70 7.62 -12.68 -0.10 7.61 16 15 O -0.53 -8.37 16.39 5.24 0.09 -8.28 16 16 C 0.03 0.32 6.28 -82.22 -0.52 -0.19 16 17 C -0.10 -1.07 10.66 -39.20 -0.42 -1.49 16 18 C -0.17 -1.83 6.21 -106.95 -0.66 -2.50 16 19 C 0.18 1.71 11.29 -17.07 -0.19 1.52 16 20 N -0.51 -5.35 10.33 -13.18 -0.14 -5.48 16 21 C 0.10 0.92 11.09 -17.90 -0.20 0.72 16 22 C -0.18 -1.53 10.09 -39.71 -0.40 -1.93 16 23 C 0.14 1.37 7.32 -84.03 -0.62 0.76 16 24 N -0.57 -5.47 4.76 -7.31 -0.03 -5.51 16 25 H 0.43 3.22 6.49 -40.82 -0.26 2.96 16 26 C 0.08 0.94 5.56 -3.49 -0.02 0.92 16 27 C -0.15 -2.23 5.67 -26.39 -0.15 -2.38 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 30 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.80 3.89 -51.93 -0.20 0.60 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -33.21 342.80 -8.82 -42.03 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.30 Total: 8.93 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.88 Total: -1.48 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.17 Total: -63.14 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.21 -8.82 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996728772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.995 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds