Wall clock time and date at job start Fri Apr 10 2020 22:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48499 * 109.46925 * 270.00198 * 3 2 1 5 5 H 1.48503 * 109.47092 * 29.99833 * 3 2 1 6 6 H 1.48495 * 109.47020 * 149.99663 * 3 2 1 7 7 C 1.38807 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99498 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00184 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00127 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46154 * 155.00495 * 10 9 7 12 12 C 1.53198 * 109.31892 * 181.38556 * 11 10 9 13 13 N 1.46925 * 108.77277 * 305.36534 * 12 11 10 14 14 C 1.34776 * 120.63127 * 233.58036 * 13 12 11 15 15 O 1.21639 * 119.99964 * 359.67443 * 14 13 12 16 16 C 1.47067 * 119.99945 * 179.67547 * 14 13 12 17 17 C 1.35903 * 125.42130 * 210.10578 * 16 14 13 18 18 C 1.41432 * 107.67272 * 179.90634 * 17 16 14 19 19 C 1.39845 * 134.34768 * 180.02562 * 18 17 16 20 20 N 1.31561 * 120.03925 * 180.33114 * 19 18 17 21 21 C 1.32361 * 122.32407 * 0.02562 * 20 19 18 22 22 C 1.36646 * 121.64309 * 359.97438 * 21 20 19 23 23 C 1.39429 * 119.01124 * 359.97438 * 22 21 20 24 24 N 1.36883 * 134.32429 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.58592 * 0.04688 * 24 23 22 26 26 C 1.46934 * 118.73691 * 53.85770 * 13 12 11 27 27 C 1.53048 * 109.46402 * 275.07247 * 10 9 7 28 28 H 0.97003 * 120.00106 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99528 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.44982 * 35.03732 * 10 9 7 31 31 H 1.09006 * 109.49900 * 61.43264 * 11 10 9 32 32 H 1.09002 * 109.52592 * 301.35565 * 11 10 9 33 33 H 1.08991 * 109.59065 * 185.57699 * 12 11 10 34 34 H 1.09000 * 109.69839 * 65.21797 * 12 11 10 35 35 H 1.07997 * 126.16394 * 0.02562 * 17 16 14 36 36 H 1.07992 * 119.98052 * 0.33076 * 19 18 17 37 37 H 1.07998 * 119.18090 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.49005 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.58475 * 65.92950 * 26 13 12 40 40 H 1.09004 * 109.58429 * 186.35042 * 26 13 12 41 41 H 1.09005 * 109.49413 * 298.56774 * 27 10 9 42 42 H 1.09002 * 109.49536 * 58.65901 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.4994 -2.2591 -0.6093 12 6 6.2496 -3.5946 -0.6383 13 7 6.2670 -4.1566 0.7191 14 6 7.4293 -4.5175 1.2980 15 8 8.4767 -4.3847 0.6939 16 6 7.4314 -5.0720 2.6602 17 6 8.4411 -4.9448 3.5609 18 6 8.0494 -5.6160 4.7426 19 6 8.6465 -5.8300 5.9889 20 7 8.0140 -6.5217 6.9121 21 6 6.8114 -7.0366 6.7110 22 6 6.1527 -6.8776 5.5243 23 6 6.7658 -6.1538 4.5024 24 7 6.4081 -5.8092 3.2269 25 1 5.5741 -6.0451 2.7913 26 6 4.9926 -4.3233 1.4311 27 6 4.2572 -2.9746 1.4390 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3620 -0.0004 30 1 3.5647 -3.2065 -0.5879 31 1 6.0566 -1.5419 -0.0065 32 1 5.3961 -1.8778 -1.6252 33 1 7.2718 -3.4322 -0.9797 34 1 5.7442 -4.2853 -1.3133 35 1 9.3736 -4.4233 3.4035 36 1 9.6273 -5.4272 6.1937 37 1 6.3388 -7.5964 7.5045 38 1 5.1720 -7.3061 5.3802 39 1 4.3847 -5.0712 0.9219 40 1 5.1853 -4.6420 2.4556 41 1 4.8261 -2.2506 2.0225 42 1 3.2691 -3.1028 1.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996728772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:05 Heat of formation + Delta-G solvation = 45.771365 kcal Electronic energy + Delta-G solvation = -25586.955825 eV Core-core repulsion = 21953.510698 eV Total energy + Delta-G solvation = -3633.445128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06751 -41.13532 -39.10937 -38.72790 -36.38101 -34.05942 -33.46704 -32.66133 -31.66356 -31.37632 -30.31954 -27.06748 -25.57200 -24.68643 -23.87102 -23.53109 -22.44759 -21.67798 -20.92568 -19.65136 -18.96972 -18.81400 -17.36509 -16.90779 -16.75686 -16.43423 -16.35585 -15.92666 -15.66350 -15.52011 -15.20253 -15.06796 -14.92378 -14.64391 -14.48482 -14.19770 -14.16106 -13.80439 -13.56108 -13.25129 -12.96951 -12.70253 -12.47237 -12.30892 -12.18253 -12.02805 -11.81474 -11.40389 -11.36989 -11.14755 -10.95849 -10.53858 -9.97129 -9.84049 -9.33586 -9.01425 -8.03580 -5.36708 -0.40063 0.49039 0.92013 1.37168 1.38739 1.45968 1.58160 1.70447 2.16149 2.46819 2.93686 3.19168 3.27883 3.47922 3.54613 3.64305 3.72514 3.90099 3.93023 4.02340 4.08036 4.16493 4.27056 4.29163 4.45609 4.52779 4.57653 4.68262 4.70635 4.77497 4.86291 4.89862 4.95055 5.00448 5.17528 5.28996 5.36710 5.44274 5.48855 5.76196 5.79540 6.11315 6.20355 6.20727 6.82612 7.06547 7.10689 7.83201 8.00538 9.17625 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.003154 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.889633 B = 8875.165728 C = 9717.746659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.256 1.256 7 C -0.224 4.224 8 H 0.063 0.937 9 N -0.753 5.753 10 C 0.176 3.824 11 C -0.133 4.133 12 C 0.121 3.879 13 N -0.598 5.598 14 C 0.584 3.416 15 O -0.557 6.557 16 C 0.011 3.989 17 C -0.098 4.098 18 C -0.190 4.190 19 C 0.172 3.828 20 N -0.528 5.528 21 C 0.098 3.902 22 C -0.179 4.179 23 C 0.127 3.873 24 N -0.562 5.562 25 H 0.435 0.565 26 C 0.094 3.906 27 C -0.141 4.141 28 H 0.257 0.743 29 H 0.363 0.637 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -15.282 8.630 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.181 1.181 7 C -0.355 4.355 8 H 0.081 0.919 9 N -0.395 5.395 10 C 0.068 3.932 11 C -0.172 4.172 12 C -0.001 4.001 13 N -0.330 5.330 14 C 0.373 3.627 15 O -0.435 6.435 16 C -0.098 4.098 17 C -0.125 4.125 18 C -0.197 4.197 19 C 0.004 3.996 20 N -0.238 5.238 21 C -0.050 4.050 22 C -0.201 4.201 23 C 0.009 3.991 24 N -0.173 5.173 25 H 0.281 0.719 26 C -0.029 4.029 27 C -0.182 4.182 28 H 0.066 0.934 29 H 0.196 0.804 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.185 0.815 36 H 0.199 0.801 37 H 0.200 0.800 38 H 0.178 0.822 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.947 -15.491 8.965 24.648 hybrid contribution -1.035 1.482 -1.081 2.107 sum 15.911 -14.009 7.883 22.618 Atomic orbital electron populations 1.69869 1.07016 1.26536 1.59953 1.25434 0.95994 1.00992 1.03022 0.85488 0.78509 0.80234 0.77975 1.20552 1.22638 1.18117 1.19026 0.82452 0.93436 1.40614 0.91860 1.42850 1.02540 1.03928 1.90175 1.20409 0.91302 0.87470 0.94044 1.22137 0.95208 0.97522 1.02331 1.21675 1.02346 0.94171 0.81880 1.48165 1.06260 1.61367 1.17169 1.17376 0.83571 0.77906 0.83889 1.90821 1.31973 1.57095 1.63650 1.20029 0.91215 1.04004 0.94535 1.21018 0.99082 1.01570 0.90876 1.19370 0.96687 1.06095 0.97539 1.22880 0.99335 0.91337 0.86030 1.67721 1.10768 1.11681 1.33596 1.22613 0.90198 0.96036 0.96118 1.21125 1.03339 1.03136 0.92548 1.18741 0.95366 0.98525 0.86460 1.42574 1.17819 1.45668 1.11205 0.71914 1.22456 0.83737 0.98545 0.98156 1.22497 0.99991 0.96074 0.99597 0.93449 0.80429 0.92619 0.92335 0.89609 0.88816 0.88948 0.81536 0.80147 0.79957 0.82184 0.88193 0.88309 0.93130 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.33 13.97 21.65 0.30 -61.03 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 3 Si 0.95 44.51 27.74 68.60 1.90 46.41 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.26 -10.94 6.52 99.48 0.65 -10.30 16 7 C -0.22 -12.01 10.41 84.03 0.87 -11.14 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.75 -32.51 4.92 -322.83 -1.59 -34.10 16 10 C 0.18 5.74 2.73 45.02 0.12 5.86 16 11 C -0.13 -3.53 5.55 30.67 0.17 -3.36 16 12 C 0.12 2.69 6.43 86.36 0.56 3.25 16 13 N -0.60 -13.33 2.97 -822.35 -2.44 -15.77 16 14 C 0.58 14.55 7.62 86.56 0.66 15.21 16 15 O -0.56 -17.13 16.39 -4.15 -0.07 -17.20 16 16 C 0.01 0.24 6.28 39.90 0.25 0.49 16 17 C -0.10 -2.02 10.66 22.51 0.24 -1.78 16 18 C -0.19 -3.75 6.21 -21.37 -0.13 -3.89 16 19 C 0.17 3.08 11.29 85.12 0.96 4.04 16 20 N -0.53 -10.19 10.33 -195.62 -2.02 -12.21 16 21 C 0.10 1.50 11.09 84.24 0.93 2.43 16 22 C -0.18 -2.59 10.09 22.18 0.22 -2.37 16 23 C 0.13 2.31 7.32 39.38 0.29 2.60 16 24 N -0.56 -9.57 4.76 -177.05 -0.84 -10.41 16 25 H 0.43 5.41 6.49 -92.71 -0.60 4.80 16 26 C 0.09 1.87 5.56 86.50 0.48 2.35 16 27 C -0.14 -4.02 5.67 30.82 0.17 -3.85 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.36 15.46 5.66 -92.70 -0.52 14.94 16 30 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.16 7.00 -2.39 -0.02 2.14 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.68 3.89 -2.39 -0.01 1.67 16 41 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -72.43 342.80 1.40 -71.03 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.11 Total: 26.53 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.27 Total: 6.74 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -6.59 Total: -133.52 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.07 Total: -17.20 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Total: -72.43 1.40 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996728772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.805 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds