Wall clock time and date at job start Fri Apr 10 2020 22:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99604 * 2 1 4 4 H 1.48495 * 109.47411 * 239.99877 * 3 2 1 5 5 H 1.48498 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46936 * 119.99863 * 3 2 1 7 7 C 1.38809 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00284 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99922 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46037 * 154.99926 * 10 9 7 12 12 C 1.53192 * 109.31667 * 181.37359 * 11 10 9 13 13 N 1.46926 * 108.76883 * 305.36588 * 12 11 10 14 14 C 1.34781 * 120.63132 * 233.57984 * 13 12 11 15 15 O 1.21775 * 119.99562 * 7.09544 * 14 13 12 16 16 C 1.41807 * 120.00348 * 187.09168 * 14 13 12 17 17 C 1.38523 * 126.78507 * 25.73481 * 16 14 13 18 18 N 1.32330 * 108.21259 * 180.28582 * 17 16 14 19 19 C 1.33197 * 109.81640 * 359.56382 * 18 17 16 20 20 C 1.40654 * 131.81744 * 180.09288 * 19 18 17 21 21 C 1.36289 * 119.38607 * 180.37472 * 20 19 18 22 22 C 1.40175 * 119.60466 * 0.02562 * 21 20 19 23 23 C 1.35257 * 120.12840 * 359.97438 * 22 21 20 24 24 N 1.35957 * 120.64043 * 0.02707 * 23 22 21 25 25 C 1.46924 * 118.74108 * 53.86155 * 13 12 11 26 26 C 1.53040 * 109.44807 * 275.06328 * 10 9 7 27 27 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99871 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.45745 * 35.02823 * 10 9 7 30 30 H 1.09010 * 109.50057 * 61.41966 * 11 10 9 31 31 H 1.09000 * 109.49913 * 301.32804 * 11 10 9 32 32 H 1.08997 * 109.58961 * 185.57860 * 12 11 10 33 33 H 1.09002 * 109.70161 * 65.21768 * 12 11 10 34 34 H 1.08000 * 125.89869 * 0.02680 * 17 16 14 35 35 H 1.07999 * 120.31140 * 0.36167 * 20 19 18 36 36 H 1.07992 * 120.19978 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.93830 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.68590 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.58938 * 65.92251 * 25 13 12 40 40 H 1.09003 * 109.58828 * 186.35186 * 25 13 12 41 41 H 1.09005 * 109.49404 * 298.57054 * 26 10 9 42 42 H 1.08994 * 109.49961 * 58.66616 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0017 11 6 1.1803 -4.7519 0.6113 12 6 1.9617 -6.0692 0.6423 13 7 2.4420 -6.3660 -0.7141 14 6 2.1744 -7.5535 -1.2928 15 8 1.4229 -8.3411 -0.7471 16 6 2.7679 -7.8856 -2.5372 17 6 3.9597 -7.3952 -3.0450 18 7 4.1607 -7.9444 -4.2320 19 6 3.1616 -8.7772 -4.5192 20 6 2.9115 -9.5911 -5.6388 21 6 1.7824 -10.3536 -5.6724 22 6 0.8885 -10.3154 -4.5933 23 6 1.1467 -9.5262 -3.5256 24 7 2.2706 -8.7624 -3.4841 25 6 3.2248 -5.3462 -1.4254 26 6 2.4245 -4.0350 -1.4353 27 1 -0.4851 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.9682 -3.5501 0.5922 30 1 0.2816 -4.8762 0.0071 31 1 0.9006 -4.4709 1.6266 32 1 1.3093 -6.8731 0.9831 33 1 2.8115 -5.9765 1.3187 34 1 4.6104 -6.6839 -2.5582 35 1 3.6076 -9.6114 -6.4643 36 1 1.5772 -10.9830 -6.5257 37 1 -0.0080 -10.9171 -4.6145 38 1 0.4529 -9.5019 -2.6983 39 1 4.1755 -5.1934 -0.9147 40 1 3.4061 -5.6730 -2.4493 41 1 1.5141 -4.1660 -2.0203 42 1 3.0303 -3.2437 -1.8767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996742098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:08 Heat of formation + Delta-G solvation = 84.704443 kcal Electronic energy + Delta-G solvation = -25787.111269 eV Core-core repulsion = 22155.354406 eV Total energy + Delta-G solvation = -3631.756863 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.21878 -39.99491 -37.70979 -37.39262 -34.59144 -33.89757 -32.30999 -31.30211 -30.43782 -29.64122 -28.79768 -25.41293 -24.43569 -23.67271 -23.20596 -22.37589 -22.09763 -20.57923 -19.41783 -17.67252 -17.30200 -17.06937 -17.03384 -16.43264 -15.92794 -15.62552 -15.07429 -14.84649 -14.72918 -14.18334 -13.99907 -13.62580 -13.51638 -13.34395 -13.09322 -12.76705 -12.43084 -12.28301 -12.16461 -11.86162 -11.47247 -11.33653 -10.99309 -10.89468 -10.82308 -10.63876 -10.46693 -10.27765 -9.93183 -9.84703 -9.68653 -9.17266 -8.90811 -8.63008 -8.12530 -6.99766 -5.79126 -3.08602 0.39153 0.56500 1.97397 2.15310 3.08121 3.17757 3.25316 3.42175 3.46794 3.47749 3.84347 4.15879 4.40581 4.48804 4.56064 4.65396 4.74156 4.97751 5.06268 5.13622 5.28775 5.31079 5.36714 5.46212 5.50834 5.60507 5.61357 5.68185 5.75113 5.90614 5.96370 6.09464 6.14850 6.20006 6.35173 6.36413 6.48370 6.59512 6.64641 6.86251 7.01748 7.38219 7.43661 7.66324 8.09214 8.39032 9.50200 10.07489 10.42043 11.43359 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.002942 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.492483 B = 9516.569183 C = 9936.644736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.119 3.881 13 N -0.592 5.592 14 C 0.596 3.404 15 O -0.560 6.560 16 C -0.136 4.136 17 C 0.099 3.901 18 N -0.495 5.495 19 C 0.239 3.761 20 C -0.089 4.089 21 C -0.089 4.089 22 C -0.146 4.146 23 C 0.076 3.924 24 N -0.323 5.323 25 C 0.085 3.915 26 C -0.149 4.149 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.200 0.800 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -21.956 -8.961 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.003 4.003 13 N -0.324 5.324 14 C 0.386 3.614 15 O -0.441 6.441 16 C -0.251 4.251 17 C -0.060 4.060 18 N -0.214 5.214 19 C -0.001 4.001 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.166 4.166 23 C -0.049 4.049 24 N 0.008 4.992 25 C -0.038 4.038 26 C -0.190 4.190 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.217 0.783 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.088 -22.006 -9.086 24.346 hybrid contribution -0.557 0.960 0.449 1.197 sum 4.530 -21.046 -8.637 23.196 Atomic orbital electron populations 1.69652 1.05146 1.25821 1.57481 1.24752 0.95497 0.97728 1.02918 0.86279 0.78532 0.83573 0.77858 1.21236 1.21730 1.21247 1.19189 0.90955 0.84081 1.42970 0.91164 1.42430 1.05800 0.99696 1.88508 1.20179 0.94478 0.86080 0.92442 1.22206 0.99221 0.94001 1.02321 1.21662 0.98889 0.98273 0.81460 1.47834 1.53766 1.13648 1.17124 1.15430 0.80853 0.81992 0.83101 1.90794 1.37868 1.49881 1.65579 1.19868 1.02114 1.06317 0.96771 1.23547 0.93994 0.97433 0.91042 1.70549 1.23222 1.11700 1.15932 1.21127 0.88097 1.00172 0.90658 1.20352 0.99117 0.95659 0.95799 1.21163 0.93088 0.98222 0.98818 1.20946 1.01928 1.00719 0.93051 1.21986 0.88730 0.92847 1.01318 1.42430 1.15724 1.26466 1.14629 1.22606 0.94752 0.88928 0.97474 1.22746 1.00007 0.94524 1.01746 0.93435 0.78278 0.93273 0.91844 0.90387 0.89226 0.91182 0.78303 0.82690 0.83568 0.82692 0.80961 0.90805 0.88997 0.92271 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.64 5.12 -53.39 -0.27 -17.91 16 10 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 11 C -0.14 -2.25 5.55 -26.62 -0.15 -2.40 16 12 C 0.12 1.67 6.44 -3.71 -0.02 1.65 16 13 N -0.59 -8.38 2.97 -175.84 -0.52 -8.90 16 14 C 0.60 9.11 7.42 -14.89 -0.11 8.99 16 15 O -0.56 -9.76 15.26 5.12 0.08 -9.68 16 16 C -0.14 -1.91 6.36 -83.48 -0.53 -2.44 16 17 C 0.10 1.26 9.42 -17.23 -0.16 1.10 16 18 N -0.50 -6.70 11.25 -12.27 -0.14 -6.84 16 19 C 0.24 2.96 7.77 -156.06 -1.21 1.74 16 20 C -0.09 -0.77 10.10 -39.37 -0.40 -1.17 16 21 C -0.09 -0.57 10.07 -39.56 -0.40 -0.96 16 22 C -0.15 -1.04 10.00 -39.92 -0.40 -1.44 16 23 C 0.08 0.79 10.55 -16.79 -0.18 0.62 16 24 N -0.32 -4.18 2.96 -60.15 -0.18 -4.36 16 25 C 0.09 1.11 5.08 -3.49 -0.02 1.09 16 26 C -0.15 -2.50 5.67 -26.39 -0.15 -2.65 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 29 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.92 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.20 1.99 6.03 -52.49 -0.32 1.67 16 35 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 37 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.17 1.82 7.19 -52.49 -0.38 1.45 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.11 4.01 -51.93 -0.21 0.90 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -34.00 343.33 -9.67 -43.67 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.35 Total: 8.82 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -4.16 Total: 0.20 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.39 Total: -65.23 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.00 -9.67 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996742098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.375 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds