Wall clock time and date at job start Fri Apr 10 2020 22:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99604 * 2 1 4 4 H 1.48495 * 109.47411 * 239.99877 * 3 2 1 5 5 H 1.48498 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46936 * 119.99863 * 3 2 1 7 7 C 1.38809 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00284 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99922 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46037 * 154.99926 * 10 9 7 12 12 C 1.53192 * 109.31667 * 181.37359 * 11 10 9 13 13 N 1.46926 * 108.76883 * 305.36588 * 12 11 10 14 14 C 1.34781 * 120.63132 * 233.57984 * 13 12 11 15 15 O 1.21775 * 119.99562 * 7.09544 * 14 13 12 16 16 C 1.41807 * 120.00348 * 187.09168 * 14 13 12 17 17 C 1.38523 * 126.78507 * 25.73481 * 16 14 13 18 18 N 1.32330 * 108.21259 * 180.28582 * 17 16 14 19 19 C 1.33197 * 109.81640 * 359.56382 * 18 17 16 20 20 C 1.40654 * 131.81744 * 180.09288 * 19 18 17 21 21 C 1.36289 * 119.38607 * 180.37472 * 20 19 18 22 22 C 1.40175 * 119.60466 * 0.02562 * 21 20 19 23 23 C 1.35257 * 120.12840 * 359.97438 * 22 21 20 24 24 N 1.35957 * 120.64043 * 0.02707 * 23 22 21 25 25 C 1.46924 * 118.74108 * 53.86155 * 13 12 11 26 26 C 1.53040 * 109.44807 * 275.06328 * 10 9 7 27 27 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99871 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.45745 * 35.02823 * 10 9 7 30 30 H 1.09010 * 109.50057 * 61.41966 * 11 10 9 31 31 H 1.09000 * 109.49913 * 301.32804 * 11 10 9 32 32 H 1.08997 * 109.58961 * 185.57860 * 12 11 10 33 33 H 1.09002 * 109.70161 * 65.21768 * 12 11 10 34 34 H 1.08000 * 125.89869 * 0.02680 * 17 16 14 35 35 H 1.07999 * 120.31140 * 0.36167 * 20 19 18 36 36 H 1.07992 * 120.19978 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.93830 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.68590 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.58938 * 65.92251 * 25 13 12 40 40 H 1.09003 * 109.58828 * 186.35186 * 25 13 12 41 41 H 1.09005 * 109.49404 * 298.57054 * 26 10 9 42 42 H 1.08994 * 109.49961 * 58.66616 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0017 11 6 1.1803 -4.7519 0.6113 12 6 1.9617 -6.0692 0.6423 13 7 2.4420 -6.3660 -0.7141 14 6 2.1744 -7.5535 -1.2928 15 8 1.4229 -8.3411 -0.7471 16 6 2.7679 -7.8856 -2.5372 17 6 3.9597 -7.3952 -3.0450 18 7 4.1607 -7.9444 -4.2320 19 6 3.1616 -8.7772 -4.5192 20 6 2.9115 -9.5911 -5.6388 21 6 1.7824 -10.3536 -5.6724 22 6 0.8885 -10.3154 -4.5933 23 6 1.1467 -9.5262 -3.5256 24 7 2.2706 -8.7624 -3.4841 25 6 3.2248 -5.3462 -1.4254 26 6 2.4245 -4.0350 -1.4353 27 1 -0.4851 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.9682 -3.5501 0.5922 30 1 0.2816 -4.8762 0.0071 31 1 0.9006 -4.4709 1.6266 32 1 1.3093 -6.8731 0.9831 33 1 2.8115 -5.9765 1.3187 34 1 4.6104 -6.6839 -2.5582 35 1 3.6076 -9.6114 -6.4643 36 1 1.5772 -10.9830 -6.5257 37 1 -0.0080 -10.9171 -4.6145 38 1 0.4529 -9.5019 -2.6983 39 1 4.1755 -5.1934 -0.9147 40 1 3.4061 -5.6730 -2.4493 41 1 1.5141 -4.1660 -2.0203 42 1 3.0303 -3.2437 -1.8767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996742098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:08 Heat of formation + Delta-G solvation = 62.984819 kcal Electronic energy + Delta-G solvation = -25788.053103 eV Core-core repulsion = 22155.354406 eV Total energy + Delta-G solvation = -3632.698696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.06789 -41.14657 -38.74742 -38.47199 -36.20599 -34.69177 -33.97844 -32.57920 -31.30897 -31.12421 -29.95208 -26.84679 -25.37411 -25.09587 -24.23373 -23.58024 -23.14852 -21.82469 -20.63934 -19.14548 -18.62879 -18.19052 -17.83633 -17.35286 -16.90695 -16.70619 -16.43630 -16.06663 -15.62187 -15.52825 -15.37294 -15.12427 -14.87873 -14.74485 -14.35686 -13.79472 -13.37455 -13.28133 -13.19760 -12.94886 -12.86550 -12.78986 -12.53512 -12.24480 -12.20447 -12.05543 -12.00054 -11.70467 -11.57411 -11.32757 -11.06766 -10.85636 -9.98510 -9.79665 -9.02921 -8.95597 -7.92562 -5.21517 -0.35067 -0.20894 1.09035 1.29475 1.48798 1.51479 1.57246 2.04072 2.17861 2.45840 2.57670 3.08579 3.38070 3.40775 3.53164 3.76984 3.82002 3.88357 3.93946 4.02114 4.11441 4.13010 4.21502 4.33719 4.38309 4.54931 4.59651 4.73076 4.77952 4.81587 4.84316 4.99730 5.02480 5.05246 5.13321 5.26798 5.31140 5.45730 5.48668 5.53933 5.58966 5.86017 6.24741 6.29109 6.54063 6.96208 7.34816 8.10465 8.33351 9.31064 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.002942 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.492483 B = 9516.569183 C = 9936.644736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.127 3.873 13 N -0.593 5.593 14 C 0.597 3.403 15 O -0.591 6.591 16 C -0.176 4.176 17 C 0.105 3.895 18 N -0.523 5.523 19 C 0.226 3.774 20 C -0.103 4.103 21 C -0.067 4.067 22 C -0.120 4.120 23 C 0.036 3.964 24 N -0.330 5.330 25 C 0.096 3.904 26 C -0.139 4.139 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.220 0.780 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -23.892 -10.604 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.166 4.166 12 C 0.004 3.996 13 N -0.324 5.324 14 C 0.389 3.611 15 O -0.475 6.475 16 C -0.289 4.289 17 C -0.055 4.055 18 N -0.243 5.243 19 C -0.014 4.014 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.089 4.089 24 N 0.001 4.999 25 C -0.026 4.026 26 C -0.180 4.180 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.195 0.805 36 H 0.211 0.789 37 H 0.210 0.790 38 H 0.179 0.821 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.621 -23.983 -10.735 27.097 hybrid contribution -1.080 1.352 0.829 1.918 sum 5.540 -22.632 -9.906 25.318 Atomic orbital electron populations 1.69823 1.06753 1.25978 1.59915 1.25568 0.96296 1.01165 1.04098 0.85234 0.77146 0.79257 0.78278 1.20299 1.22684 1.20255 1.19625 0.91586 0.85003 1.40464 0.90062 1.42676 1.05363 1.01113 1.88624 1.20435 0.94555 0.84597 0.93892 1.22058 0.98411 0.94542 1.01611 1.21605 0.99462 0.96444 0.82070 1.47853 1.53789 1.13657 1.17106 1.15614 0.80293 0.81841 0.83384 1.90761 1.39430 1.50881 1.66417 1.19775 1.03359 1.08599 0.97202 1.23863 0.93651 0.97199 0.90812 1.70535 1.24314 1.12979 1.16443 1.21793 0.87747 1.00365 0.91460 1.20841 1.00639 0.95454 0.95319 1.21743 0.91182 0.96758 0.99357 1.21528 1.02636 0.98402 0.91413 1.22258 0.88872 0.94845 1.02916 1.42561 1.16355 1.26502 1.14512 1.22611 0.94820 0.86396 0.98779 1.22527 0.99451 0.96467 0.99525 0.94215 0.79970 0.92463 0.93675 0.90446 0.89580 0.88694 0.76344 0.80454 0.78938 0.78974 0.82149 0.87779 0.87754 0.94556 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -12.71 9.93 84.03 0.83 -11.88 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -36.64 5.12 -322.82 -1.65 -38.30 16 10 C 0.17 6.49 2.73 45.01 0.12 6.61 16 11 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 12 C 0.13 3.47 6.44 86.36 0.56 4.02 16 13 N -0.59 -16.51 2.97 -828.43 -2.46 -18.97 16 14 C 0.60 18.46 7.42 85.12 0.63 19.09 16 15 O -0.59 -21.22 15.26 -4.59 -0.07 -21.29 16 16 C -0.18 -4.95 6.36 39.07 0.25 -4.70 16 17 C 0.11 2.61 9.42 84.69 0.80 3.41 16 18 N -0.52 -13.82 11.25 -192.73 -2.17 -15.99 16 19 C 0.23 5.34 7.77 134.00 1.04 6.38 16 20 C -0.10 -1.48 10.10 22.41 0.23 -1.25 16 21 C -0.07 -0.56 10.07 22.29 0.22 -0.33 16 22 C -0.12 -1.32 10.00 22.05 0.22 -1.09 16 23 C 0.04 0.72 10.55 83.37 0.88 1.60 16 24 N -0.33 -8.48 2.96 -344.21 -1.02 -9.50 16 25 C 0.10 2.38 5.08 86.51 0.44 2.82 16 26 C -0.14 -4.63 5.67 30.82 0.17 -4.46 16 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.37 20.16 7.80 -92.71 -0.72 19.44 16 29 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 30 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 2.47 7.00 -2.39 -0.02 2.45 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.22 4.07 6.03 -2.91 -0.02 4.05 16 35 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.19 -0.10 8.06 -2.91 -0.02 -0.13 16 37 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.16 3.54 7.19 -2.91 -0.02 3.52 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 2.41 4.01 -2.39 -0.01 2.40 16 41 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -77.00 343.33 2.31 -74.69 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.33 Total: 29.07 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.03 Total: 12.16 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -7.01 Total: -142.38 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.07 Total: -21.29 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.00 2.31 -74.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996742098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.674 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds