Wall clock time and date at job start Fri Apr 10 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48505 * 109.47141 * 270.00021 * 3 2 1 5 5 H 1.48504 * 109.47154 * 29.99795 * 3 2 1 6 6 H 1.48495 * 109.47148 * 149.99851 * 3 2 1 7 7 C 1.38809 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00265 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00015 * 180.02562 * 9 7 2 11 11 C 1.53043 * 109.45987 * 155.00207 * 10 9 7 12 12 C 1.53194 * 109.30971 * 181.37082 * 11 10 9 13 13 N 1.46927 * 108.77800 * 305.35961 * 12 11 10 14 14 C 1.34776 * 120.63110 * 233.59092 * 13 12 11 15 15 O 1.21633 * 120.00220 * 5.38966 * 14 13 12 16 16 C 1.47258 * 119.99666 * 185.39010 * 14 13 12 17 17 C 1.38934 * 120.90516 * 47.38295 * 16 14 13 18 18 C 1.39772 * 119.18808 * 179.97438 * 17 16 14 19 19 C 1.35071 * 121.27718 * 0.02764 * 18 17 16 20 20 N 1.36233 * 121.76765 * 359.95103 * 19 18 17 21 21 N 1.40084 * 132.48809 * 180.02562 * 20 19 18 22 22 C 1.31346 * 108.88349 * 180.02562 * 21 20 19 23 23 C 1.38883 * 108.94809 * 0.02562 * 22 21 20 24 24 C 1.37185 * 120.18688 * 0.04649 * 20 19 18 25 25 C 1.46929 * 118.73503 * 53.86073 * 13 12 11 26 26 C 1.53047 * 109.44575 * 275.05906 * 10 9 7 27 27 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99818 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46484 * 35.02345 * 10 9 7 30 30 H 1.08993 * 109.49933 * 61.41849 * 11 10 9 31 31 H 1.08996 * 109.52084 * 301.33568 * 11 10 9 32 32 H 1.09004 * 109.58421 * 185.57552 * 12 11 10 33 33 H 1.08999 * 109.70759 * 65.22245 * 12 11 10 34 34 H 1.07992 * 120.41011 * 359.95864 * 17 16 14 35 35 H 1.08001 * 119.36284 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.11788 * 180.02562 * 19 18 17 37 37 H 1.08001 * 125.52814 * 179.97438 * 22 21 20 38 38 H 1.07995 * 126.22219 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.58095 * 65.93041 * 25 13 12 40 40 H 1.09001 * 109.58223 * 186.35446 * 25 13 12 41 41 H 1.08997 * 109.50015 * 298.57279 * 26 10 9 42 42 H 1.09000 * 109.49948 * 58.67551 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.4995 -2.2586 -0.6104 12 6 6.2495 -3.5940 -0.6401 13 7 6.2671 -4.1569 0.7170 14 6 7.4295 -4.5180 1.2956 15 8 8.4846 -4.2895 0.7352 16 6 7.4222 -5.1893 2.6063 17 6 6.5691 -6.2570 2.8564 18 6 6.5924 -6.8681 4.1132 19 6 7.4263 -6.4402 5.0857 20 7 8.2816 -5.3981 4.8899 21 7 9.2245 -4.7790 5.7205 22 6 9.8022 -3.8047 5.0555 23 6 9.2633 -3.7501 3.7766 24 6 8.3140 -4.7501 3.6812 25 6 4.9928 -4.3241 1.4290 26 6 4.2573 -2.9753 1.4376 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0004 29 1 3.5647 -3.2062 -0.5894 30 1 6.0565 -1.5418 -0.0072 31 1 5.3960 -1.8768 -1.6260 32 1 7.2719 -3.4313 -0.9814 33 1 5.7443 -4.2844 -1.3155 34 1 5.8961 -6.6103 2.0893 35 1 5.9301 -7.6981 4.3108 36 1 7.4155 -6.9382 6.0440 37 1 10.5710 -3.1514 5.4409 38 1 9.5366 -3.0533 2.9982 39 1 4.3849 -5.0716 0.9193 40 1 5.1856 -4.6433 2.4532 41 1 4.8261 -2.2518 2.0215 42 1 3.2692 -3.1040 1.8795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996765555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:11 Heat of formation + Delta-G solvation = 97.661520 kcal Electronic energy + Delta-G solvation = -25875.368640 eV Core-core repulsion = 22244.173638 eV Total energy + Delta-G solvation = -3631.195002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17700 -40.14464 -37.55970 -37.28844 -34.71211 -33.30442 -32.00275 -30.99414 -30.85633 -29.88736 -28.69269 -25.76124 -24.30718 -23.31845 -22.81833 -22.43204 -21.68474 -20.48522 -19.32426 -17.86214 -17.65530 -17.41189 -16.55315 -16.16301 -15.80904 -15.73554 -15.01982 -14.88019 -14.32164 -14.18189 -14.04207 -13.60659 -13.53230 -13.34166 -13.07533 -12.62915 -12.53084 -12.40205 -12.23366 -12.05520 -11.84136 -11.14827 -11.09178 -11.04934 -10.93473 -10.66657 -10.58630 -10.29469 -9.96926 -9.90139 -9.65579 -9.63197 -8.97680 -8.67160 -7.88143 -7.33258 -5.82395 -3.18419 0.14592 0.82466 1.89335 2.44453 2.49102 2.82826 3.18393 3.34672 3.38113 3.42836 3.92834 4.09801 4.32526 4.36029 4.54903 4.58808 4.93026 4.99362 5.03937 5.15511 5.18481 5.25354 5.33313 5.42264 5.43405 5.49300 5.57677 5.63661 5.77070 5.77246 5.85619 5.93796 6.03338 6.10144 6.21947 6.31627 6.33836 6.46618 6.54601 6.73070 6.87953 7.26483 7.30798 7.92755 8.02429 8.36739 9.14834 9.87774 10.07310 11.35753 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.003270 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.335928 B = 8561.647146 C = 8647.395329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.143 4.143 12 C 0.118 3.882 13 N -0.597 5.597 14 C 0.569 3.431 15 O -0.533 6.533 16 C -0.118 4.118 17 C -0.043 4.043 18 C -0.174 4.174 19 C 0.133 3.867 20 N -0.283 5.283 21 N -0.317 5.317 22 C 0.082 3.918 23 C -0.264 4.264 24 C 0.128 3.872 25 C 0.099 3.901 26 C -0.151 4.151 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.821 -14.806 7.662 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.330 5.330 14 C 0.357 3.643 15 O -0.410 6.410 16 C -0.123 4.123 17 C -0.066 4.066 18 C -0.197 4.197 19 C 0.007 3.993 20 N -0.050 5.050 21 N -0.140 5.140 22 C -0.096 4.096 23 C -0.293 4.293 24 C 0.009 3.991 25 C -0.024 4.024 26 C -0.192 4.192 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.212 0.788 38 H 0.176 0.824 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.154 -15.278 8.549 23.821 hybrid contribution 0.411 1.704 -0.563 1.841 sum 16.566 -13.574 7.986 22.857 Atomic orbital electron populations 1.69697 1.05112 1.25899 1.57354 1.24668 0.95212 0.97226 1.01892 0.86570 0.79220 0.85011 0.77831 1.21025 1.21743 1.20360 1.19057 0.80519 0.94682 1.43263 0.89157 1.42801 1.04028 1.01983 1.90190 1.20146 0.90220 0.89464 0.92789 1.22250 0.97183 0.96441 1.02330 1.21653 1.02256 0.94843 0.81712 1.48078 1.06361 1.61556 1.17002 1.17681 0.83894 0.78675 0.84094 1.90804 1.30497 1.55204 1.64541 1.20372 0.98469 0.99855 0.93592 1.21757 0.94788 0.92911 0.97134 1.20651 1.02219 1.03937 0.92843 1.21515 0.89000 0.87327 1.01425 1.46205 1.26467 1.22433 1.09941 1.77860 1.06782 1.13988 1.15341 1.23914 0.98022 0.95008 0.92643 1.21356 1.03512 1.04883 0.99568 1.20119 0.97795 0.95203 0.86014 1.22199 0.83758 0.99491 0.96921 1.22721 1.00462 0.94610 1.01376 0.93018 0.80616 0.92411 0.91831 0.90282 0.89060 0.91001 0.83240 0.82147 0.81332 0.78799 0.82406 0.90874 0.90082 0.92257 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.97 55.49 0.78 -27.88 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.78 27.73 -169.99 -4.71 17.06 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -6.62 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.75 -16.85 4.92 -53.39 -0.26 -17.11 16 10 C 0.18 3.21 2.73 -67.89 -0.19 3.03 16 11 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 12 C 0.12 1.50 6.44 -3.71 -0.02 1.48 16 13 N -0.60 -7.66 2.97 -173.82 -0.52 -8.18 16 14 C 0.57 7.99 7.21 -12.59 -0.09 7.90 16 15 O -0.53 -9.04 16.36 5.25 0.09 -8.95 16 16 C -0.12 -1.43 5.05 -102.69 -0.52 -1.95 16 17 C -0.04 -0.37 7.62 -38.75 -0.30 -0.66 16 18 C -0.17 -1.15 9.90 -40.13 -0.40 -1.55 16 19 C 0.13 1.09 11.12 -16.72 -0.19 0.91 16 20 N -0.28 -3.39 3.89 -9.42 -0.04 -3.43 16 21 N -0.32 -4.00 12.66 30.51 0.39 -3.61 16 22 C 0.08 0.92 11.95 -17.52 -0.21 0.71 16 23 C -0.26 -3.43 10.68 -39.35 -0.42 -3.85 16 24 C 0.13 1.69 6.84 -82.19 -0.56 1.12 16 25 C 0.10 1.16 5.27 -3.48 -0.02 1.15 16 26 C -0.15 -2.35 5.67 -26.38 -0.15 -2.50 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.36 8.17 5.66 -40.82 -0.23 7.93 16 29 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.15 0.96 7.26 -52.49 -0.38 0.58 16 35 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.85 5.06 -51.93 -0.26 0.59 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -35.07 345.70 -8.01 -43.08 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.48 Total: 6.99 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.46 Total: -3.18 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.35 Total: -60.20 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.07 -8.01 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996765555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.739 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds