Wall clock time and date at job start Fri Apr 10 2020 22:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48505 * 109.47141 * 270.00021 * 3 2 1 5 5 H 1.48504 * 109.47154 * 29.99795 * 3 2 1 6 6 H 1.48495 * 109.47148 * 149.99851 * 3 2 1 7 7 C 1.38809 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00265 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00015 * 180.02562 * 9 7 2 11 11 C 1.53043 * 109.45987 * 155.00207 * 10 9 7 12 12 C 1.53194 * 109.30971 * 181.37082 * 11 10 9 13 13 N 1.46927 * 108.77800 * 305.35961 * 12 11 10 14 14 C 1.34776 * 120.63110 * 233.59092 * 13 12 11 15 15 O 1.21633 * 120.00220 * 5.38966 * 14 13 12 16 16 C 1.47258 * 119.99666 * 185.39010 * 14 13 12 17 17 C 1.38934 * 120.90516 * 47.38295 * 16 14 13 18 18 C 1.39772 * 119.18808 * 179.97438 * 17 16 14 19 19 C 1.35071 * 121.27718 * 0.02764 * 18 17 16 20 20 N 1.36233 * 121.76765 * 359.95103 * 19 18 17 21 21 N 1.40084 * 132.48809 * 180.02562 * 20 19 18 22 22 C 1.31346 * 108.88349 * 180.02562 * 21 20 19 23 23 C 1.38883 * 108.94809 * 0.02562 * 22 21 20 24 24 C 1.37185 * 120.18688 * 0.04649 * 20 19 18 25 25 C 1.46929 * 118.73503 * 53.86073 * 13 12 11 26 26 C 1.53047 * 109.44575 * 275.05906 * 10 9 7 27 27 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99818 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46484 * 35.02345 * 10 9 7 30 30 H 1.08993 * 109.49933 * 61.41849 * 11 10 9 31 31 H 1.08996 * 109.52084 * 301.33568 * 11 10 9 32 32 H 1.09004 * 109.58421 * 185.57552 * 12 11 10 33 33 H 1.08999 * 109.70759 * 65.22245 * 12 11 10 34 34 H 1.07992 * 120.41011 * 359.95864 * 17 16 14 35 35 H 1.08001 * 119.36284 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.11788 * 180.02562 * 19 18 17 37 37 H 1.08001 * 125.52814 * 179.97438 * 22 21 20 38 38 H 1.07995 * 126.22219 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.58095 * 65.93041 * 25 13 12 40 40 H 1.09001 * 109.58223 * 186.35446 * 25 13 12 41 41 H 1.08997 * 109.50015 * 298.57279 * 26 10 9 42 42 H 1.09000 * 109.49948 * 58.67551 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.4995 -2.2586 -0.6104 12 6 6.2495 -3.5940 -0.6401 13 7 6.2671 -4.1569 0.7170 14 6 7.4295 -4.5180 1.2956 15 8 8.4846 -4.2895 0.7352 16 6 7.4222 -5.1893 2.6063 17 6 6.5691 -6.2570 2.8564 18 6 6.5924 -6.8681 4.1132 19 6 7.4263 -6.4402 5.0857 20 7 8.2816 -5.3981 4.8899 21 7 9.2245 -4.7790 5.7205 22 6 9.8022 -3.8047 5.0555 23 6 9.2633 -3.7501 3.7766 24 6 8.3140 -4.7501 3.6812 25 6 4.9928 -4.3241 1.4290 26 6 4.2573 -2.9753 1.4376 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0004 29 1 3.5647 -3.2062 -0.5894 30 1 6.0565 -1.5418 -0.0072 31 1 5.3960 -1.8768 -1.6260 32 1 7.2719 -3.4313 -0.9814 33 1 5.7443 -4.2844 -1.3155 34 1 5.8961 -6.6103 2.0893 35 1 5.9301 -7.6981 4.3108 36 1 7.4155 -6.9382 6.0440 37 1 10.5710 -3.1514 5.4409 38 1 9.5366 -3.0533 2.9982 39 1 4.3849 -5.0716 0.9193 40 1 5.1856 -4.6433 2.4532 41 1 4.8261 -2.2518 2.0215 42 1 3.2692 -3.1040 1.8795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996765555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:10 Heat of formation + Delta-G solvation = 74.104899 kcal Electronic energy + Delta-G solvation = -25876.390131 eV Core-core repulsion = 22244.173638 eV Total energy + Delta-G solvation = -3632.216493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.98268 -41.20357 -38.80210 -38.07236 -36.26188 -34.33221 -33.66939 -32.02853 -31.71607 -31.50293 -29.55526 -26.97715 -25.50719 -24.44891 -23.83693 -23.63455 -22.69478 -21.75229 -20.50395 -19.49371 -18.62467 -18.42467 -17.44089 -17.06234 -16.74351 -16.64082 -16.48078 -16.04046 -15.86637 -15.26028 -15.08984 -14.94109 -14.77380 -14.50561 -14.18087 -14.13589 -13.59327 -13.33688 -13.27355 -13.12614 -12.95284 -12.80933 -12.58703 -12.22171 -12.14120 -11.98784 -11.95027 -11.78071 -11.50347 -11.33515 -11.06870 -10.86283 -10.41756 -9.75855 -9.30240 -8.68693 -8.01116 -5.33489 -0.58747 0.05941 1.12290 1.38379 1.39316 1.46455 1.51259 1.67528 1.89253 2.35294 2.48619 3.15613 3.30530 3.33787 3.46609 3.57065 3.79204 3.87592 3.94101 4.03443 4.14446 4.28056 4.34286 4.38551 4.48156 4.54423 4.59476 4.71755 4.78561 4.80519 4.83900 4.90972 4.98742 5.02209 5.05148 5.23690 5.29595 5.45701 5.49830 5.58158 5.79797 5.81032 6.23471 6.28476 6.44812 6.99949 7.09237 7.86466 8.03713 9.20187 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.003270 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.335928 B = 8561.647146 C = 8647.395329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.259 1.259 7 C -0.222 4.222 8 H 0.066 0.934 9 N -0.754 5.754 10 C 0.176 3.824 11 C -0.133 4.133 12 C 0.122 3.878 13 N -0.596 5.596 14 C 0.571 3.429 15 O -0.572 6.572 16 C -0.160 4.160 17 C -0.017 4.017 18 C -0.160 4.160 19 C 0.122 3.878 20 N -0.290 5.290 21 N -0.343 5.343 22 C 0.086 3.914 23 C -0.302 4.302 24 C 0.113 3.887 25 C 0.109 3.891 26 C -0.143 4.143 27 H 0.256 0.744 28 H 0.361 0.639 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.201 0.799 37 H 0.225 0.775 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 -17.045 8.429 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.184 1.184 7 C -0.353 4.353 8 H 0.084 0.916 9 N -0.397 5.397 10 C 0.068 3.932 11 C -0.172 4.172 12 C 0.000 4.000 13 N -0.327 5.327 14 C 0.360 3.640 15 O -0.453 6.453 16 C -0.165 4.165 17 C -0.040 4.040 18 C -0.181 4.181 19 C -0.003 4.003 20 N -0.057 5.057 21 N -0.166 5.166 22 C -0.091 4.091 23 C -0.331 4.331 24 C -0.006 4.006 25 C -0.013 4.013 26 C -0.184 4.184 27 H 0.065 0.935 28 H 0.194 0.806 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.196 0.804 35 H 0.226 0.774 36 H 0.218 0.782 37 H 0.241 0.759 38 H 0.163 0.837 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.758 -17.559 9.329 26.003 hybrid contribution 0.187 2.213 -0.782 2.355 sum 16.945 -15.346 8.547 24.406 Atomic orbital electron populations 1.69859 1.06918 1.26442 1.60149 1.25392 0.95964 1.00810 1.03192 0.85527 0.78453 0.80509 0.77954 1.20554 1.22593 1.18436 1.19056 0.82411 0.93513 1.40300 0.91602 1.42892 1.02606 1.03975 1.90189 1.20426 0.91089 0.87407 0.94252 1.22124 0.95397 0.97607 1.02057 1.21626 1.01902 0.94153 0.82361 1.48107 1.06512 1.61187 1.16933 1.17981 0.83377 0.78138 0.84518 1.90775 1.31845 1.56985 1.65674 1.20259 1.01134 1.02347 0.92754 1.22258 0.92818 0.90478 0.98478 1.21247 1.01596 1.04107 0.91169 1.22392 0.88132 0.86300 1.03464 1.46479 1.26816 1.23085 1.09321 1.77772 1.07782 1.14841 1.16160 1.24363 0.98055 0.94830 0.91853 1.21420 1.05293 1.06017 1.00323 1.20366 0.97912 0.95413 0.86948 1.22215 0.83054 0.97568 0.98459 1.22527 1.00037 0.96625 0.99228 0.93488 0.80605 0.92286 0.92961 0.89813 0.89508 0.88613 0.80447 0.77365 0.78213 0.75901 0.83734 0.87938 0.88294 0.93864 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.69 13.97 21.65 0.30 -61.39 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.95 45.27 27.73 68.60 1.90 47.17 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 7 C -0.22 -12.02 10.41 84.03 0.87 -11.15 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.75 -33.46 4.92 -322.82 -1.59 -35.04 16 10 C 0.18 5.95 2.73 45.02 0.12 6.07 16 11 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 12 C 0.12 2.89 6.44 86.36 0.56 3.44 16 13 N -0.60 -14.09 2.97 -822.10 -2.44 -16.52 16 14 C 0.57 15.46 7.21 86.61 0.62 16.09 16 15 O -0.57 -19.63 16.36 -4.14 -0.07 -19.69 16 16 C -0.16 -3.61 5.05 -18.61 -0.09 -3.71 16 17 C -0.02 -0.23 7.62 22.81 0.17 -0.05 16 18 C -0.16 -1.31 9.90 21.91 0.22 -1.10 16 19 C 0.12 1.58 11.12 83.28 0.93 2.50 16 20 N -0.29 -6.52 3.89 -183.70 -0.71 -7.23 16 21 N -0.34 -8.42 12.66 -57.40 -0.73 -9.15 16 22 C 0.09 1.94 11.95 84.92 1.01 2.95 16 23 C -0.30 -8.12 10.68 22.42 0.24 -7.88 16 24 C 0.11 2.95 6.84 40.43 0.28 3.23 16 25 C 0.11 2.24 5.27 86.51 0.46 2.70 16 26 C -0.14 -4.28 5.67 30.82 0.17 -4.11 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.36 15.93 5.66 -92.71 -0.52 15.41 16 29 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.20 7.00 -2.39 -0.02 2.19 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.18 1.29 7.26 -2.91 -0.02 1.27 16 35 H 0.21 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.22 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 1.72 5.06 -2.39 -0.01 1.71 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -80.02 345.70 3.33 -76.69 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.46 Total: 22.87 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.20 Total: 2.29 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -5.17 Total: -129.33 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.07 Total: -19.69 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Total: -80.02 3.33 -76.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996765555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.794 kcal (2) G-P(sol) polarization free energy of solvation -80.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds