Wall clock time and date at job start Fri Apr 10 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48506 * 109.46815 * 269.99513 * 3 2 1 5 5 H 1.48497 * 109.47254 * 29.99770 * 3 2 1 6 6 H 1.48496 * 109.46871 * 149.99893 * 3 2 1 7 7 C 1.38813 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00194 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00149 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.46162 * 155.00154 * 10 9 7 12 12 C 1.53189 * 109.31342 * 181.38855 * 11 10 9 13 13 N 1.46931 * 108.77733 * 305.36477 * 12 11 10 14 14 C 1.34780 * 120.63219 * 233.58875 * 13 12 11 15 15 O 1.21635 * 119.99855 * 183.79055 * 14 13 12 16 16 C 1.47300 * 119.99822 * 3.79203 * 14 13 12 17 17 C 1.46617 * 120.61357 * 309.97735 * 16 14 13 18 18 C 1.34229 * 119.80597 * 179.97438 * 17 16 14 19 19 N 1.37390 * 120.95951 * 0.02562 * 18 17 16 20 20 C 1.34897 * 132.31126 * 180.02562 * 19 18 17 21 21 N 1.30992 * 109.50601 * 179.70695 * 20 19 18 22 22 C 1.33127 * 109.93038 * 0.45150 * 21 20 19 23 23 C 1.38195 * 120.82652 * 0.02562 * 19 18 17 24 24 C 1.38578 * 120.61592 * 129.97944 * 16 14 13 25 25 C 1.46931 * 118.73648 * 53.85827 * 13 12 11 26 26 C 1.53045 * 109.46206 * 275.07295 * 10 9 7 27 27 H 0.97007 * 120.00447 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00118 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.45830 * 35.03095 * 10 9 7 30 30 H 1.09000 * 109.49407 * 61.43860 * 11 10 9 31 31 H 1.09002 * 109.52216 * 301.35889 * 11 10 9 32 32 H 1.09000 * 109.59155 * 185.57998 * 12 11 10 33 33 H 1.09003 * 109.70737 * 65.22448 * 12 11 10 34 34 H 1.07996 * 120.09659 * 359.97438 * 17 16 14 35 35 H 1.07996 * 119.52389 * 180.02562 * 18 17 16 36 36 H 1.07999 * 125.24459 * 0.02562 * 20 19 18 37 37 H 1.08005 * 126.30641 * 179.82047 * 22 21 20 38 38 H 1.07999 * 120.48730 * 0.02562 * 24 16 14 39 39 H 1.09002 * 109.58470 * 65.93097 * 25 13 12 40 40 H 1.08998 * 109.58232 * 186.35346 * 25 13 12 41 41 H 1.08997 * 109.49587 * 298.56296 * 26 10 9 42 42 H 1.08994 * 109.49965 * 58.65806 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9619 -6.0694 0.6405 13 7 2.4415 -6.3659 -0.7163 14 6 2.1735 -7.5532 -1.2952 15 8 2.6339 -7.8134 -2.3906 16 6 1.3232 -8.5356 -0.6014 17 6 1.5911 -8.9025 0.7926 18 6 0.8055 -9.7993 1.4093 19 7 -0.2510 -10.3829 0.7531 20 6 -1.1703 -11.2913 1.1398 21 7 -1.9902 -11.5336 0.1474 22 6 -1.6411 -10.8128 -0.9160 23 6 -0.5328 -10.0621 -0.5613 24 6 0.2551 -9.1302 -1.2541 25 6 3.2239 -5.3458 -1.4277 26 6 2.4235 -4.0346 -1.4368 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 2.9684 -3.5504 0.5905 30 1 0.2814 -4.8763 0.0065 31 1 0.9007 -4.4717 1.6258 32 1 1.3098 -6.8736 0.9813 33 1 2.8120 -5.9770 1.3165 34 1 2.4182 -8.4526 1.3216 35 1 1.0068 -10.0659 2.4363 36 1 -1.2251 -11.7447 2.1185 37 1 -2.1340 -10.8107 -1.8770 38 1 0.0328 -8.8807 -2.2811 39 1 4.1749 -5.1931 -0.9175 40 1 3.4046 -5.6724 -2.4518 41 1 1.5128 -4.1654 -2.0213 42 1 3.0290 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996766678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:14 Heat of formation + Delta-G solvation = 75.359758 kcal Electronic energy + Delta-G solvation = -25520.231452 eV Core-core repulsion = 21888.069373 eV Total energy + Delta-G solvation = -3632.162079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.02365 -40.26752 -37.62452 -37.08307 -34.58308 -33.65824 -32.13970 -31.45105 -30.61102 -29.43508 -28.49865 -25.38690 -24.49461 -23.51649 -22.81381 -22.47760 -22.10339 -20.45319 -19.16080 -18.28679 -17.88309 -17.13715 -16.35946 -16.23244 -16.02936 -15.36613 -14.96173 -14.87119 -14.75796 -14.35175 -13.90438 -13.77767 -13.64508 -13.47204 -13.20486 -12.97876 -12.51578 -12.34507 -12.15318 -11.86450 -11.56929 -11.06558 -10.95381 -10.91923 -10.85924 -10.62288 -10.49091 -10.31420 -10.08055 -9.87561 -9.75213 -9.49516 -8.95800 -8.63311 -7.87080 -7.03325 -5.82487 -3.12022 0.31911 0.76890 2.25030 2.44113 2.74367 2.85773 3.16705 3.39426 3.44682 3.46307 4.02276 4.14774 4.28142 4.32269 4.52932 4.57257 4.63837 4.90664 5.07868 5.15592 5.17327 5.28932 5.32290 5.36037 5.47705 5.53829 5.56047 5.69120 5.74532 5.82298 5.90161 6.08154 6.13054 6.19789 6.21882 6.36478 6.47586 6.51004 6.79572 6.83895 6.97884 7.35051 7.52348 7.63887 8.04743 8.35594 9.46990 10.03664 10.38147 11.39983 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.002803 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.977285 B = 9987.103300 C =10501.347567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.103 3.897 13 N -0.596 5.596 14 C 0.565 3.435 15 O -0.539 6.539 16 C -0.137 4.137 17 C -0.107 4.107 18 C 0.042 3.958 19 N -0.366 5.366 20 C 0.151 3.849 21 N -0.460 5.460 22 C 0.004 3.996 23 C -0.012 4.012 24 C -0.007 4.007 25 C 0.112 3.888 26 C -0.150 4.150 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.212 0.788 37 H 0.185 0.815 38 H 0.155 0.845 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -21.823 4.152 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.179 4.179 12 C -0.020 4.020 13 N -0.328 5.328 14 C 0.353 3.647 15 O -0.417 6.417 16 C -0.143 4.143 17 C -0.128 4.128 18 C -0.076 4.076 19 N -0.038 5.038 20 C -0.125 4.125 21 N -0.173 5.173 22 C -0.152 4.152 23 C -0.121 4.121 24 C -0.028 4.028 25 C -0.010 4.010 26 C -0.191 4.191 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.229 0.771 37 H 0.202 0.798 38 H 0.172 0.828 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.756 -22.370 3.799 22.758 hybrid contribution 0.785 1.634 0.094 1.816 sum 2.541 -20.735 3.893 21.250 Atomic orbital electron populations 1.69657 1.05139 1.25740 1.57479 1.24751 0.95503 0.97735 1.02870 0.86206 0.78649 0.83861 0.77560 1.21688 1.21769 1.20748 1.19222 0.90971 0.84058 1.42962 0.91150 1.42425 1.05788 0.99694 1.88539 1.20166 0.94345 0.86022 0.92584 1.22211 0.99260 0.94057 1.02354 1.22067 0.98784 0.98557 0.82606 1.48106 1.53215 1.14519 1.16962 1.17902 0.80282 0.81508 0.85057 1.90818 1.52576 1.77757 1.20570 1.20922 0.98443 1.00698 0.94227 1.21889 1.00231 0.97372 0.93263 1.21467 0.89284 0.97870 0.98992 1.42930 1.20938 1.28793 1.11163 1.24962 0.89422 0.96501 1.01583 1.69985 1.24728 1.22988 0.99646 1.22776 0.95762 0.97559 0.99118 1.19546 1.02157 1.04778 0.85598 1.20793 0.91211 0.91156 0.99591 1.21866 0.93734 0.87641 0.97772 1.22759 1.00134 0.94751 1.01466 0.93457 0.78276 0.93370 0.91736 0.90429 0.89615 0.90973 0.82546 0.81198 0.77133 0.79837 0.82782 0.91481 0.89502 0.92194 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.28 5.12 -53.38 -0.27 -17.55 16 10 C 0.18 3.25 2.73 -67.89 -0.19 3.07 16 11 C -0.14 -2.04 5.55 -26.61 -0.15 -2.19 16 12 C 0.10 1.14 5.41 -3.71 -0.02 1.12 16 13 N -0.60 -7.77 2.97 -173.81 -0.52 -8.29 16 14 C 0.56 7.78 7.27 -12.57 -0.09 7.69 16 15 O -0.54 -9.21 16.47 5.25 0.09 -9.13 16 16 C -0.14 -1.52 5.13 -102.71 -0.53 -2.05 16 17 C -0.11 -0.85 7.54 -37.62 -0.28 -1.13 16 18 C 0.04 0.29 10.92 -16.47 -0.18 0.11 16 19 N -0.37 -3.34 2.94 -62.50 -0.18 -3.52 16 20 C 0.15 1.31 12.70 -90.10 -1.14 0.16 16 21 N -0.46 -5.12 11.18 -13.90 -0.16 -5.28 16 22 C 0.00 0.04 12.03 -16.90 -0.20 -0.16 16 23 C -0.01 -0.13 6.77 -84.12 -0.57 -0.70 16 24 C -0.01 -0.07 9.85 -38.67 -0.38 -0.45 16 25 C 0.11 1.58 6.45 -3.48 -0.02 1.56 16 26 C -0.15 -2.54 5.67 -26.38 -0.15 -2.69 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 29 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 0.80 4.49 -51.93 -0.23 0.57 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.16 0.91 7.15 -52.49 -0.38 0.53 16 35 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -34.17 347.84 -9.74 -43.91 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.48 Total: 7.32 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.15 Total: -2.70 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.40 Total: -61.51 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.17 -9.74 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996766678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.265 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds