Wall clock time and date at job start Fri Apr 10 2020 22:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48506 * 109.46815 * 269.99513 * 3 2 1 5 5 H 1.48497 * 109.47254 * 29.99770 * 3 2 1 6 6 H 1.48496 * 109.46871 * 149.99893 * 3 2 1 7 7 C 1.38813 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00194 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00149 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.46162 * 155.00154 * 10 9 7 12 12 C 1.53189 * 109.31342 * 181.38855 * 11 10 9 13 13 N 1.46931 * 108.77733 * 305.36477 * 12 11 10 14 14 C 1.34780 * 120.63219 * 233.58875 * 13 12 11 15 15 O 1.21635 * 119.99855 * 183.79055 * 14 13 12 16 16 C 1.47300 * 119.99822 * 3.79203 * 14 13 12 17 17 C 1.46617 * 120.61357 * 309.97735 * 16 14 13 18 18 C 1.34229 * 119.80597 * 179.97438 * 17 16 14 19 19 N 1.37390 * 120.95951 * 0.02562 * 18 17 16 20 20 C 1.34897 * 132.31126 * 180.02562 * 19 18 17 21 21 N 1.30992 * 109.50601 * 179.70695 * 20 19 18 22 22 C 1.33127 * 109.93038 * 0.45150 * 21 20 19 23 23 C 1.38195 * 120.82652 * 0.02562 * 19 18 17 24 24 C 1.38578 * 120.61592 * 129.97944 * 16 14 13 25 25 C 1.46931 * 118.73648 * 53.85827 * 13 12 11 26 26 C 1.53045 * 109.46206 * 275.07295 * 10 9 7 27 27 H 0.97007 * 120.00447 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00118 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.45830 * 35.03095 * 10 9 7 30 30 H 1.09000 * 109.49407 * 61.43860 * 11 10 9 31 31 H 1.09002 * 109.52216 * 301.35889 * 11 10 9 32 32 H 1.09000 * 109.59155 * 185.57998 * 12 11 10 33 33 H 1.09003 * 109.70737 * 65.22448 * 12 11 10 34 34 H 1.07996 * 120.09659 * 359.97438 * 17 16 14 35 35 H 1.07996 * 119.52389 * 180.02562 * 18 17 16 36 36 H 1.07999 * 125.24459 * 0.02562 * 20 19 18 37 37 H 1.08005 * 126.30641 * 179.82047 * 22 21 20 38 38 H 1.07999 * 120.48730 * 0.02562 * 24 16 14 39 39 H 1.09002 * 109.58470 * 65.93097 * 25 13 12 40 40 H 1.08998 * 109.58232 * 186.35346 * 25 13 12 41 41 H 1.08997 * 109.49587 * 298.56296 * 26 10 9 42 42 H 1.08994 * 109.49965 * 58.65806 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9619 -6.0694 0.6405 13 7 2.4415 -6.3659 -0.7163 14 6 2.1735 -7.5532 -1.2952 15 8 2.6339 -7.8134 -2.3906 16 6 1.3232 -8.5356 -0.6014 17 6 1.5911 -8.9025 0.7926 18 6 0.8055 -9.7993 1.4093 19 7 -0.2510 -10.3829 0.7531 20 6 -1.1703 -11.2913 1.1398 21 7 -1.9902 -11.5336 0.1474 22 6 -1.6411 -10.8128 -0.9160 23 6 -0.5328 -10.0621 -0.5613 24 6 0.2551 -9.1302 -1.2541 25 6 3.2239 -5.3458 -1.4277 26 6 2.4235 -4.0346 -1.4368 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 2.9684 -3.5504 0.5905 30 1 0.2814 -4.8763 0.0065 31 1 0.9007 -4.4717 1.6258 32 1 1.3098 -6.8736 0.9813 33 1 2.8120 -5.9770 1.3165 34 1 2.4182 -8.4526 1.3216 35 1 1.0068 -10.0659 2.4363 36 1 -1.2251 -11.7447 2.1185 37 1 -2.1340 -10.8107 -1.8770 38 1 0.0328 -8.8807 -2.2811 39 1 4.1749 -5.1931 -0.9175 40 1 3.4046 -5.6724 -2.4518 41 1 1.5128 -4.1654 -2.0213 42 1 3.0290 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996766678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:13 Heat of formation + Delta-G solvation = 54.734897 kcal Electronic energy + Delta-G solvation = -25521.125813 eV Core-core repulsion = 21888.069373 eV Total energy + Delta-G solvation = -3633.056440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.70202 -41.34651 -38.84659 -37.89186 -36.18173 -34.44662 -33.80188 -32.42576 -31.57006 -31.02601 -29.32070 -26.77295 -25.62978 -24.57443 -23.93478 -23.65640 -22.81007 -21.69773 -20.32083 -19.16503 -18.95419 -18.68726 -17.37524 -17.05838 -16.78547 -16.69214 -16.23561 -15.83319 -15.55007 -15.48220 -15.39096 -15.20069 -14.77323 -14.46449 -14.43129 -13.94713 -13.82590 -13.45124 -13.13478 -12.86363 -12.85170 -12.79144 -12.57622 -12.22156 -12.15931 -11.97382 -11.74198 -11.68719 -11.47939 -11.33724 -11.01319 -10.89554 -10.22628 -9.76398 -9.01209 -8.56244 -7.93862 -5.22320 -0.43638 0.14341 1.45865 1.47886 1.49020 1.57086 1.65164 1.87328 2.07102 2.35447 2.56499 3.26495 3.39655 3.46557 3.65017 3.78474 3.80755 3.86284 3.93491 3.96956 4.11530 4.15194 4.32895 4.38877 4.46309 4.55824 4.61891 4.72224 4.77091 4.81570 4.84356 4.88243 4.95541 5.00896 5.11691 5.29579 5.41707 5.48137 5.49813 5.53678 5.57127 6.21478 6.27988 6.30624 6.82889 6.98304 7.34368 8.10648 8.32619 9.29673 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.002803 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.977285 B = 9987.103300 C =10501.347567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.131 4.131 12 C 0.110 3.890 13 N -0.595 5.595 14 C 0.565 3.435 15 O -0.581 6.581 16 C -0.147 4.147 17 C -0.120 4.120 18 C 0.059 3.941 19 N -0.373 5.373 20 C 0.163 3.837 21 N -0.495 5.495 22 C -0.011 4.011 23 C -0.030 4.030 24 C -0.021 4.021 25 C 0.121 3.879 26 C -0.139 4.139 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.219 0.781 36 H 0.253 0.747 37 H 0.194 0.806 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 -23.507 6.803 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.170 4.170 12 C -0.012 4.012 13 N -0.326 5.326 14 C 0.354 3.646 15 O -0.462 6.462 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.058 4.058 19 N -0.045 5.045 20 C -0.112 4.112 21 N -0.209 5.209 22 C -0.166 4.166 23 C -0.138 4.138 24 C -0.042 4.042 25 C -0.001 4.001 26 C -0.180 4.180 27 H 0.058 0.942 28 H 0.202 0.798 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.236 0.764 36 H 0.269 0.731 37 H 0.211 0.789 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.262 -24.085 6.461 25.149 hybrid contribution 0.311 2.044 -0.732 2.193 sum 3.573 -22.041 5.729 23.052 Atomic orbital electron populations 1.69814 1.06643 1.25906 1.59867 1.25532 0.96295 1.01037 1.04104 0.85201 0.77889 0.79833 0.77231 1.21885 1.22471 1.19100 1.19626 0.91478 0.85130 1.40426 0.90359 1.42673 1.05408 1.01092 1.88533 1.20442 0.94763 0.84953 0.93345 1.22096 0.98406 0.94698 1.01835 1.22213 0.99953 0.97110 0.81931 1.48149 1.52826 1.14025 1.17617 1.18313 0.79832 0.81921 0.84503 1.90793 1.54242 1.78675 1.22457 1.20871 0.98041 1.00327 0.95998 1.22126 1.01681 0.98544 0.91649 1.22241 0.87234 0.95900 1.00470 1.43167 1.21664 1.29005 1.10653 1.25801 0.87978 0.95147 1.02295 1.69987 1.26254 1.24101 1.00545 1.23080 0.96071 0.97668 0.99761 1.19532 1.02418 1.05135 0.86745 1.20782 0.91916 0.91834 0.99632 1.21684 0.94176 0.86211 0.98071 1.22545 0.99279 0.96063 1.00116 0.94183 0.79820 0.92662 0.93397 0.89878 0.87049 0.87902 0.79838 0.76404 0.73099 0.78891 0.83550 0.89183 0.90468 0.94430 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.52 5.12 -322.81 -1.65 -37.18 16 10 C 0.17 6.16 2.73 45.02 0.12 6.29 16 11 C -0.13 -3.64 5.55 30.67 0.17 -3.47 16 12 C 0.11 2.09 5.41 86.36 0.47 2.56 16 13 N -0.60 -14.52 2.97 -822.04 -2.44 -16.96 16 14 C 0.56 15.11 7.27 86.63 0.63 15.74 16 15 O -0.58 -20.10 16.47 -4.14 -0.07 -20.17 16 16 C -0.15 -3.05 5.13 -18.62 -0.10 -3.14 16 17 C -0.12 -1.45 7.54 23.54 0.18 -1.27 16 18 C 0.06 0.53 10.92 82.91 0.91 1.44 16 19 N -0.37 -5.67 2.94 -351.65 -1.03 -6.70 16 20 C 0.16 2.32 12.70 180.17 2.29 4.61 16 21 N -0.50 -10.33 11.18 -197.89 -2.21 -12.55 16 22 C -0.01 -0.22 12.03 84.56 1.02 0.80 16 23 C -0.03 -0.61 6.77 38.71 0.26 -0.34 16 24 C -0.02 -0.45 9.85 22.86 0.23 -0.22 16 25 C 0.12 3.31 6.45 86.51 0.56 3.86 16 26 C -0.14 -4.73 5.67 30.82 0.17 -4.56 16 27 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 28 H 0.37 19.53 7.80 -92.71 -0.72 18.81 16 29 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 1.64 4.49 -2.39 -0.01 1.63 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.18 1.16 7.15 -2.91 -0.02 1.14 16 35 H 0.22 -0.19 8.06 -2.91 -0.02 -0.22 16 36 H 0.25 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.29 7.02 -2.39 -0.02 2.28 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -77.12 347.84 3.43 -73.68 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.33 Total: 24.38 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 8.20 Total: 6.69 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -7.06 Total: -131.91 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.07 Total: -20.17 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -77.12 3.43 -73.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996766678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.417 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds