Wall clock time and date at job start Fri Apr 10 2020 22:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48505 * 109.47134 * 270.00168 * 3 2 1 5 5 H 1.48497 * 109.46930 * 29.99676 * 3 2 1 6 6 H 1.48496 * 109.47447 * 150.00018 * 3 2 1 7 7 C 1.38823 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99503 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99892 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99698 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46097 * 275.06531 * 10 9 7 12 12 C 1.53189 * 109.31354 * 178.61141 * 11 10 9 13 13 N 1.46926 * 108.77361 * 54.63622 * 12 11 10 14 14 C 1.34781 * 120.63246 * 126.36690 * 13 12 11 15 15 O 1.21613 * 119.99640 * 354.87751 * 14 13 12 16 16 C 1.47373 * 120.00210 * 174.88018 * 14 13 12 17 17 C 1.39256 * 120.83356 * 322.27044 * 16 14 13 18 18 N 1.31917 * 120.96782 * 179.97438 * 17 16 14 19 19 C 1.31917 * 122.71624 * 0.02562 * 18 17 16 20 20 C 1.38689 * 120.79899 * 359.97438 * 19 18 17 21 21 N 1.37755 * 134.30405 * 180.02562 * 20 19 18 22 22 H 0.97001 * 125.55959 * 0.02562 * 21 20 19 23 23 C 1.36562 * 108.87704 * 180.02562 * 21 20 19 24 24 C 1.34647 * 109.66072 * 359.97438 * 23 21 20 25 25 C 1.40979 * 118.84021 * 359.74990 * 20 19 18 26 26 C 1.46927 * 118.74097 * 306.39092 * 13 12 11 27 27 C 1.53040 * 109.45804 * 154.99599 * 10 9 7 28 28 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00225 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.45030 * 35.03242 * 10 9 7 31 31 H 1.09007 * 109.49373 * 58.66591 * 11 10 9 32 32 H 1.09000 * 109.49534 * 298.56822 * 11 10 9 33 33 H 1.09002 * 109.59151 * 294.84892 * 12 11 10 34 34 H 1.08997 * 109.58766 * 174.42527 * 12 11 10 35 35 H 1.07997 * 119.51462 * 359.96215 * 17 16 14 36 36 H 1.08001 * 119.59919 * 179.97438 * 19 18 17 37 37 H 1.07998 * 125.16545 * 179.97438 * 23 21 20 38 38 H 1.07997 * 126.08405 * 179.97438 * 24 23 21 39 39 H 1.08997 * 109.58808 * 173.39323 * 26 13 12 40 40 H 1.08997 * 109.58699 * 293.68069 * 26 13 12 41 41 H 1.08995 * 109.49845 * 61.43785 * 27 10 9 42 42 H 1.08995 * 109.52735 * 301.34869 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 4.2562 -2.9752 1.4399 12 6 4.9920 -4.3188 1.4342 13 7 6.2663 -4.1570 0.7210 14 6 7.4284 -4.5174 1.3008 15 8 7.4399 -4.8937 2.4572 16 6 8.6851 -4.4553 0.5336 17 6 8.7156 -4.7995 -0.8154 18 7 9.8389 -4.7444 -1.5048 19 6 10.9850 -4.3673 -0.9715 20 6 11.0610 -4.0042 0.3649 21 7 12.0786 -3.5777 1.1897 22 1 13.0037 -3.4529 0.9260 23 6 11.5725 -3.3592 2.4391 24 6 10.2539 -3.6317 2.4477 25 6 9.8885 -4.0393 1.1469 26 6 6.2498 -3.5945 -0.6362 27 6 5.4998 -2.2589 -0.6073 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 0.0007 30 1 3.5650 -3.2065 -0.5875 31 1 3.2677 -3.1036 1.8811 32 1 4.8246 -2.2515 2.0240 33 1 4.3824 -5.0672 0.9279 34 1 5.1846 -4.6342 2.4596 35 1 7.8062 -5.1163 -1.3043 36 1 11.8749 -4.3410 -1.5829 37 1 12.1431 -3.0195 3.2907 38 1 9.5930 -3.5495 3.2979 39 1 7.2724 -3.4320 -0.9769 40 1 5.7449 -4.2849 -1.3119 41 1 6.0566 -1.5420 -0.0039 42 1 5.3972 -1.8774 -1.6231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996768765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:16 Heat of formation + Delta-G solvation = 64.086575 kcal Electronic energy + Delta-G solvation = -25835.023219 eV Core-core repulsion = 22202.372298 eV Total energy + Delta-G solvation = -3632.650920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13085 -40.08528 -38.23236 -37.39566 -34.65274 -33.04981 -32.01483 -31.13783 -30.25624 -30.09511 -29.37452 -25.61101 -24.28343 -23.31001 -22.69852 -22.24179 -21.37308 -20.49482 -19.47672 -18.32221 -17.82153 -17.41868 -16.77295 -15.88693 -15.57821 -15.25535 -15.06212 -14.81204 -14.74139 -14.09016 -14.00095 -13.62073 -13.46595 -13.27368 -13.10525 -12.88644 -12.71247 -12.43973 -12.33840 -11.98802 -11.74739 -11.02336 -10.99553 -10.89060 -10.55045 -10.51260 -10.36055 -10.20845 -9.91501 -9.59311 -9.51193 -8.96325 -8.92248 -8.56549 -8.21953 -7.28292 -5.77794 -3.13447 0.28387 1.11371 2.35368 2.58096 2.76771 3.02217 3.37165 3.40263 3.45052 3.64881 4.09432 4.29061 4.41256 4.56242 4.58558 4.72923 4.87758 4.97006 4.99969 5.06452 5.30175 5.34270 5.38340 5.48387 5.56949 5.58570 5.71513 5.82382 5.86345 5.91061 6.10180 6.12602 6.15626 6.23784 6.27082 6.47566 6.50748 6.54261 6.85230 6.96800 6.98278 7.44267 7.66421 7.98180 8.17924 8.41368 9.19626 9.92387 10.12144 11.40536 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003158 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.339511 B = 8863.837489 C = 9023.873818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.150 4.150 12 C 0.113 3.887 13 N -0.599 5.599 14 C 0.565 3.435 15 O -0.537 6.537 16 C -0.134 4.134 17 C 0.092 3.908 18 N -0.471 5.471 19 C 0.133 3.867 20 C 0.021 3.979 21 N -0.577 5.577 22 H 0.422 0.578 23 C 0.069 3.931 24 C -0.195 4.195 25 C -0.025 4.025 26 C 0.098 3.902 27 C -0.143 4.143 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.973 -8.984 0.329 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.191 4.191 12 C -0.009 4.009 13 N -0.332 5.332 14 C 0.353 3.647 15 O -0.414 6.414 16 C -0.139 4.139 17 C -0.060 4.060 18 N -0.179 5.179 19 C -0.033 4.033 20 C -0.089 4.089 21 N -0.180 5.180 22 H 0.260 0.740 23 C -0.061 4.061 24 C -0.219 4.219 25 C -0.037 4.037 26 C -0.025 4.025 27 C -0.182 4.182 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.716 -9.463 0.027 28.342 hybrid contribution 0.938 1.683 0.840 2.102 sum 27.654 -7.780 0.868 28.740 Atomic orbital electron populations 1.69696 1.05106 1.25829 1.57520 1.24671 0.95210 0.97190 1.02033 0.86562 0.79212 0.85070 0.77748 1.21085 1.21775 1.20401 1.19075 0.80538 0.94705 1.42987 0.89125 1.42796 1.04022 1.01969 1.90243 1.20157 0.90023 0.89411 0.93043 1.22627 1.00512 0.95022 1.00922 1.21743 0.82665 0.98549 0.97931 1.48076 1.06523 1.61670 1.16923 1.17943 0.82908 0.77728 0.86166 1.90765 1.86356 1.47777 1.16544 1.20376 0.93426 1.05044 0.95102 1.22875 0.96504 0.97083 0.89495 1.67628 0.98077 1.14533 1.37701 1.21908 0.96730 0.95774 0.88928 1.19322 0.88950 1.06148 0.94478 1.41760 1.10122 1.57545 1.08612 0.74011 1.22170 0.94935 1.01413 0.87555 1.20787 0.95032 1.08930 0.97196 1.18150 0.91281 0.99742 0.94530 1.22188 1.01859 0.95564 0.82901 1.22248 0.97466 0.96205 1.02282 0.93057 0.80694 0.92381 0.90150 0.92376 0.91298 0.89391 0.81629 0.82607 0.80381 0.82814 0.89300 0.90585 0.91932 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.06 27.74 -169.99 -4.71 17.34 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.30 4.92 -53.38 -0.26 -17.56 16 10 C 0.18 3.36 2.73 -67.89 -0.19 3.17 16 11 C -0.15 -2.59 5.66 -26.61 -0.15 -2.74 16 12 C 0.11 1.67 6.44 -3.71 -0.02 1.65 16 13 N -0.60 -8.41 2.97 -174.05 -0.52 -8.93 16 14 C 0.56 8.55 7.34 -12.54 -0.09 8.46 16 15 O -0.54 -9.62 15.84 5.27 0.08 -9.54 16 16 C -0.13 -1.77 5.25 -104.63 -0.55 -2.32 16 17 C 0.09 1.06 8.54 -17.14 -0.15 0.91 16 18 N -0.47 -5.25 10.30 -12.85 -0.13 -5.38 16 19 C 0.13 1.21 11.21 -17.35 -0.19 1.01 16 20 C 0.02 0.20 7.31 -84.00 -0.61 -0.41 16 21 N -0.58 -3.64 6.13 -10.63 -0.07 -3.71 16 22 H 0.42 1.07 8.96 -40.82 -0.37 0.70 16 23 C 0.07 0.49 11.84 -16.72 -0.20 0.29 16 24 C -0.19 -2.14 10.36 -39.76 -0.41 -2.56 16 25 C -0.03 -0.31 6.00 -106.59 -0.64 -0.95 16 26 C 0.10 1.20 4.85 -3.71 -0.02 1.18 16 27 C -0.14 -2.12 5.55 -26.61 -0.15 -2.27 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 30 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.36 6.99 -51.93 -0.36 0.99 16 35 H 0.17 1.65 6.28 -52.49 -0.33 1.32 16 36 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.15 1.82 7.90 -52.49 -0.41 1.40 16 39 H 0.09 0.99 4.54 -51.93 -0.24 0.76 16 40 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -35.66 341.33 -8.65 -44.31 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.33 Total: 8.13 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.62 Total: -1.41 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.20 Total: -63.98 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.66 -8.65 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996768765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.395 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds