Wall clock time and date at job start Fri Apr 10 2020 22:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48505 * 109.47134 * 270.00168 * 3 2 1 5 5 H 1.48497 * 109.46930 * 29.99676 * 3 2 1 6 6 H 1.48496 * 109.47447 * 150.00018 * 3 2 1 7 7 C 1.38823 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99503 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99892 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99698 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46097 * 275.06531 * 10 9 7 12 12 C 1.53189 * 109.31354 * 178.61141 * 11 10 9 13 13 N 1.46926 * 108.77361 * 54.63622 * 12 11 10 14 14 C 1.34781 * 120.63246 * 126.36690 * 13 12 11 15 15 O 1.21613 * 119.99640 * 354.87751 * 14 13 12 16 16 C 1.47373 * 120.00210 * 174.88018 * 14 13 12 17 17 C 1.39256 * 120.83356 * 322.27044 * 16 14 13 18 18 N 1.31917 * 120.96782 * 179.97438 * 17 16 14 19 19 C 1.31917 * 122.71624 * 0.02562 * 18 17 16 20 20 C 1.38689 * 120.79899 * 359.97438 * 19 18 17 21 21 N 1.37755 * 134.30405 * 180.02562 * 20 19 18 22 22 H 0.97001 * 125.55959 * 0.02562 * 21 20 19 23 23 C 1.36562 * 108.87704 * 180.02562 * 21 20 19 24 24 C 1.34647 * 109.66072 * 359.97438 * 23 21 20 25 25 C 1.40979 * 118.84021 * 359.74990 * 20 19 18 26 26 C 1.46927 * 118.74097 * 306.39092 * 13 12 11 27 27 C 1.53040 * 109.45804 * 154.99599 * 10 9 7 28 28 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00225 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.45030 * 35.03242 * 10 9 7 31 31 H 1.09007 * 109.49373 * 58.66591 * 11 10 9 32 32 H 1.09000 * 109.49534 * 298.56822 * 11 10 9 33 33 H 1.09002 * 109.59151 * 294.84892 * 12 11 10 34 34 H 1.08997 * 109.58766 * 174.42527 * 12 11 10 35 35 H 1.07997 * 119.51462 * 359.96215 * 17 16 14 36 36 H 1.08001 * 119.59919 * 179.97438 * 19 18 17 37 37 H 1.07998 * 125.16545 * 179.97438 * 23 21 20 38 38 H 1.07997 * 126.08405 * 179.97438 * 24 23 21 39 39 H 1.08997 * 109.58808 * 173.39323 * 26 13 12 40 40 H 1.08997 * 109.58699 * 293.68069 * 26 13 12 41 41 H 1.08995 * 109.49845 * 61.43785 * 27 10 9 42 42 H 1.08995 * 109.52735 * 301.34869 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 4.2562 -2.9752 1.4399 12 6 4.9920 -4.3188 1.4342 13 7 6.2663 -4.1570 0.7210 14 6 7.4284 -4.5174 1.3008 15 8 7.4399 -4.8937 2.4572 16 6 8.6851 -4.4553 0.5336 17 6 8.7156 -4.7995 -0.8154 18 7 9.8389 -4.7444 -1.5048 19 6 10.9850 -4.3673 -0.9715 20 6 11.0610 -4.0042 0.3649 21 7 12.0786 -3.5777 1.1897 22 1 13.0037 -3.4529 0.9260 23 6 11.5725 -3.3592 2.4391 24 6 10.2539 -3.6317 2.4477 25 6 9.8885 -4.0393 1.1469 26 6 6.2498 -3.5945 -0.6362 27 6 5.4998 -2.2589 -0.6073 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 0.0007 30 1 3.5650 -3.2065 -0.5875 31 1 3.2677 -3.1036 1.8811 32 1 4.8246 -2.2515 2.0240 33 1 4.3824 -5.0672 0.9279 34 1 5.1846 -4.6342 2.4596 35 1 7.8062 -5.1163 -1.3043 36 1 11.8749 -4.3410 -1.5829 37 1 12.1431 -3.0195 3.2907 38 1 9.5930 -3.5495 3.2979 39 1 7.2724 -3.4320 -0.9769 40 1 5.7449 -4.2849 -1.3119 41 1 6.0566 -1.5420 -0.0039 42 1 5.3972 -1.8774 -1.6231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996768765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:15 Heat of formation + Delta-G solvation = 38.167900 kcal Electronic energy + Delta-G solvation = -25836.147137 eV Core-core repulsion = 22202.372298 eV Total energy + Delta-G solvation = -3633.774839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.85276 -41.18385 -39.05223 -38.72199 -36.28633 -34.15606 -33.63652 -32.25162 -31.64009 -30.98488 -30.42154 -26.94763 -25.49990 -24.41141 -23.92915 -23.43758 -22.31033 -21.64967 -20.66117 -19.68972 -18.94227 -18.66701 -17.63606 -16.99649 -16.69995 -16.54404 -16.06217 -15.84582 -15.76683 -15.65220 -15.14431 -14.97373 -14.73909 -14.53405 -14.30564 -14.08838 -13.83831 -13.54585 -13.43319 -13.15468 -12.99155 -12.92752 -12.60106 -12.23095 -12.13516 -11.93891 -11.77803 -11.57353 -11.35982 -11.11764 -10.93914 -10.49154 -9.75553 -9.64214 -9.31321 -8.97064 -8.01399 -5.34528 -0.49950 0.36450 1.37618 1.40398 1.47442 1.53983 1.76192 1.95133 2.07090 2.48764 2.81853 3.26300 3.29494 3.52894 3.56038 3.71897 3.82994 3.88363 4.00950 4.12035 4.13431 4.16178 4.31945 4.36456 4.43641 4.54605 4.67346 4.69361 4.74410 4.78728 4.81992 4.94043 5.07526 5.13897 5.24931 5.38106 5.43656 5.49782 5.56340 5.78912 5.80532 6.22936 6.32667 6.56471 6.89497 7.05835 7.08649 7.85034 8.03595 9.20190 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003158 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.339511 B = 8863.837489 C = 9023.873818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.258 1.258 7 C -0.225 4.225 8 H 0.060 0.940 9 N -0.752 5.752 10 C 0.177 3.823 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.599 5.599 14 C 0.564 3.436 15 O -0.576 6.576 16 C -0.167 4.167 17 C 0.098 3.902 18 N -0.491 5.491 19 C 0.149 3.851 20 C 0.012 3.988 21 N -0.554 5.554 22 H 0.444 0.556 23 C 0.110 3.890 24 C -0.249 4.249 25 C -0.053 4.053 26 C 0.104 3.896 27 C -0.133 4.133 28 H 0.257 0.743 29 H 0.363 0.637 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.177 0.823 36 H 0.197 0.803 37 H 0.224 0.776 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.386 -8.644 -0.899 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.183 1.183 7 C -0.356 4.356 8 H 0.078 0.922 9 N -0.394 5.394 10 C 0.069 3.931 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.331 5.331 14 C 0.354 3.646 15 O -0.457 6.457 16 C -0.173 4.173 17 C -0.053 4.053 18 N -0.200 5.200 19 C -0.017 4.017 20 C -0.098 4.098 21 N -0.158 5.158 22 H 0.287 0.713 23 C -0.022 4.022 24 C -0.274 4.274 25 C -0.064 4.064 26 C -0.019 4.019 27 C -0.172 4.172 28 H 0.066 0.934 29 H 0.196 0.804 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.213 0.787 37 H 0.240 0.760 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 31.212 -9.151 -1.241 32.549 hybrid contribution -0.304 1.490 1.273 1.984 sum 30.907 -7.660 0.033 31.843 Atomic orbital electron populations 1.69875 1.07083 1.26558 1.60021 1.25468 0.96046 1.01112 1.02978 0.85437 0.78386 0.79959 0.78129 1.20132 1.22556 1.18276 1.19046 0.82531 0.93449 1.40622 0.92168 1.42837 1.02512 1.03905 1.90166 1.20406 0.91667 0.87401 0.93644 1.22426 0.99488 0.96240 0.99833 1.21566 0.83213 0.97185 0.98117 1.48110 1.05929 1.61536 1.17483 1.18346 0.83692 0.76762 0.85805 1.90729 1.86939 1.49645 1.18374 1.20256 0.92757 1.08409 0.95842 1.23006 0.97334 0.96148 0.88781 1.67724 0.98552 1.15920 1.37820 1.22559 0.97266 0.92882 0.89014 1.19380 0.88860 1.06839 0.94764 1.41791 1.10673 1.55577 1.07796 0.71347 1.22730 0.93632 0.97334 0.88509 1.20811 0.96987 1.12875 0.96678 1.18515 0.92172 1.00098 0.95648 1.22308 1.02778 0.94505 0.82261 1.22145 0.94976 0.97729 1.02370 0.93430 0.80380 0.92582 0.92324 0.93683 0.89525 0.90318 0.80576 0.78678 0.75955 0.85072 0.87589 0.88143 0.92549 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 2 C -0.06 -3.82 5.50 84.87 0.47 -3.35 16 3 Si 0.95 45.84 27.74 68.60 1.90 47.74 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 7 C -0.23 -12.71 10.41 84.04 0.87 -11.84 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 N -0.75 -34.59 4.92 -322.80 -1.59 -36.18 16 10 C 0.18 6.42 2.73 45.02 0.12 6.54 16 11 C -0.14 -4.92 5.66 30.67 0.17 -4.74 16 12 C 0.12 3.64 6.44 86.36 0.56 4.19 16 13 N -0.60 -16.60 2.97 -822.83 -2.45 -19.05 16 14 C 0.56 17.37 7.34 86.65 0.64 18.01 16 15 O -0.58 -21.64 15.84 -4.07 -0.06 -21.70 16 16 C -0.17 -4.33 5.25 -19.87 -0.10 -4.44 16 17 C 0.10 2.11 8.54 84.93 0.73 2.84 16 18 N -0.49 -9.68 10.30 -194.56 -2.00 -11.68 16 19 C 0.15 2.19 11.21 84.79 0.95 3.14 16 20 C 0.01 0.20 7.31 38.99 0.29 0.48 16 21 N -0.55 -4.76 6.13 -187.56 -1.15 -5.91 16 22 H 0.44 -0.01 8.96 -92.71 -0.83 -0.84 16 23 C 0.11 1.19 11.84 83.13 0.98 2.17 16 24 C -0.25 -5.36 10.36 22.16 0.23 -5.13 16 25 C -0.05 -1.26 6.00 -21.14 -0.13 -1.39 16 26 C 0.10 2.35 4.85 86.36 0.42 2.76 16 27 C -0.13 -3.75 5.55 30.67 0.17 -3.58 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.36 16.26 5.66 -92.71 -0.52 15.73 16 30 H 0.06 2.08 8.08 -2.38 -0.02 2.06 16 31 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.52 6.99 -2.39 -0.02 2.51 16 35 H 0.18 3.16 6.28 -2.91 -0.02 3.14 16 36 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.13 3.33 7.90 -2.91 -0.02 3.30 16 39 H 0.11 2.14 4.54 -2.39 -0.01 2.13 16 40 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -81.70 341.33 0.98 -80.72 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.34 Total: 23.43 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.36 Total: 5.67 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -6.89 Total: -135.86 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -81.70 0.98 -80.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996768765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.893 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds