Wall clock time and date at job start Fri Apr 10 2020 22:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47272 * 29.99837 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99807 * 3 2 1 7 7 C 1.38806 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00372 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46111 * 154.99862 * 10 9 7 12 12 C 1.53194 * 109.31136 * 181.36837 * 11 10 9 13 13 N 1.46920 * 108.78023 * 305.36804 * 12 11 10 14 14 C 1.34769 * 120.63123 * 233.58997 * 13 12 11 15 15 O 1.21652 * 120.00118 * 5.73473 * 14 13 12 16 16 C 1.47052 * 119.99988 * 185.74159 * 14 13 12 17 17 C 1.37598 * 119.93068 * 261.16085 * 16 14 13 18 18 C 1.39942 * 120.01828 * 180.02562 * 17 16 14 19 19 C 1.36211 * 119.91530 * 359.97438 * 18 17 16 20 20 C 1.40918 * 119.80533 * 359.97438 * 19 18 17 21 21 N 1.32567 * 132.19303 * 180.28037 * 20 19 18 22 22 C 1.33235 * 109.14082 * 180.16636 * 21 20 19 23 23 C 1.35443 * 108.57941 * 359.59557 * 22 21 20 24 24 N 1.36255 * 107.17603 * 0.24754 * 23 22 21 25 25 C 1.46931 * 118.73931 * 53.85662 * 13 12 11 26 26 C 1.53045 * 109.44858 * 275.05992 * 10 9 7 27 27 H 0.96997 * 120.00243 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99642 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.45753 * 35.02483 * 10 9 7 30 30 H 1.08997 * 109.49698 * 61.42041 * 11 10 9 31 31 H 1.08996 * 109.52276 * 301.33700 * 11 10 9 32 32 H 1.08998 * 109.58546 * 185.57506 * 12 11 10 33 33 H 1.09008 * 109.70219 * 65.22508 * 12 11 10 34 34 H 1.08001 * 119.99207 * 359.97438 * 17 16 14 35 35 H 1.07998 * 120.04342 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.09840 * 180.02562 * 19 18 17 37 37 H 1.08009 * 125.71194 * 179.86372 * 22 21 20 38 38 H 1.08005 * 126.41548 * 180.22716 * 23 22 21 39 39 H 1.08997 * 109.58683 * 65.92497 * 25 13 12 40 40 H 1.08993 * 109.58848 * 186.36081 * 25 13 12 41 41 H 1.09005 * 109.49381 * 298.57456 * 26 10 9 42 42 H 1.08997 * 109.49309 * 58.66332 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5000 -2.2582 -0.6082 12 6 6.2502 -3.5936 -0.6379 13 7 6.2667 -4.1570 0.7189 14 6 7.4286 -4.5184 1.2983 15 8 8.4846 -4.2838 0.7417 16 6 7.4199 -5.1963 2.6032 17 6 7.6530 -4.4764 3.7524 18 6 7.6457 -5.1198 4.9951 19 6 7.4072 -6.4590 5.0653 20 6 7.1681 -7.1907 3.8850 21 7 6.9096 -8.4729 3.6692 22 6 6.7623 -8.6747 2.3605 23 6 6.9214 -7.4914 1.7209 24 7 7.1775 -6.5507 2.6727 25 6 4.9918 -4.3247 1.4298 26 6 4.2563 -2.9760 1.4385 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3619 0.0014 29 1 3.5652 -3.2059 -0.5892 30 1 6.0566 -1.5416 -0.0043 31 1 5.3972 -1.8760 -1.6238 32 1 7.2727 -3.4307 -0.9784 33 1 5.7454 -4.2837 -1.3140 34 1 7.8424 -3.4146 3.6953 35 1 7.8281 -4.5550 5.8974 36 1 7.4004 -6.9584 6.0229 37 1 6.5472 -9.6223 1.8890 38 1 6.8577 -7.3248 0.6557 39 1 4.3843 -5.0720 0.9194 40 1 5.1838 -4.6443 2.4540 41 1 4.8246 -2.2525 2.0232 42 1 3.2679 -3.1048 1.8796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996795988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:19 Heat of formation + Delta-G solvation = 80.463705 kcal Electronic energy + Delta-G solvation = -26071.475976 eV Core-core repulsion = 22439.535221 eV Total energy + Delta-G solvation = -3631.940755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.13193 -40.37471 -37.89604 -37.25068 -34.84899 -33.98761 -32.20512 -31.26183 -30.53220 -29.93419 -29.06584 -25.88166 -24.43293 -23.25374 -22.99778 -22.72797 -21.93337 -20.62322 -19.45610 -18.33214 -17.80327 -17.42377 -16.86971 -16.46039 -15.91652 -15.71360 -15.14045 -14.96478 -14.41970 -14.30799 -14.12804 -13.90300 -13.70188 -13.56224 -13.09981 -12.74514 -12.61271 -12.53010 -12.32645 -12.05047 -11.99855 -11.36639 -11.23953 -11.11767 -11.04171 -10.75461 -10.62410 -10.35526 -10.16825 -10.03058 -9.68226 -9.14201 -9.04058 -8.88545 -8.14994 -7.39465 -5.86461 -3.23378 0.19198 0.96805 1.70604 2.41362 2.51231 2.79836 3.19622 3.30177 3.33151 3.38961 3.82837 3.97658 4.24082 4.50286 4.51703 4.68394 4.79857 4.91623 5.00987 5.05364 5.11575 5.14037 5.21544 5.32120 5.37862 5.46368 5.49330 5.63087 5.66583 5.70809 5.76639 5.92479 5.98225 6.03536 6.08683 6.19723 6.30268 6.32953 6.62054 6.66043 6.77288 7.02648 7.56680 7.66148 7.87934 8.32248 9.09776 9.82411 10.01440 11.31539 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003291 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.086106 B = 8505.060694 C = 8656.151259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.115 3.885 13 N -0.590 5.590 14 C 0.563 3.437 15 O -0.522 6.522 16 C 0.052 3.948 17 C -0.093 4.093 18 C -0.105 4.105 19 C -0.063 4.063 20 C 0.215 3.785 21 N -0.487 5.487 22 C 0.036 3.964 23 C -0.091 4.091 24 N -0.341 5.341 25 C 0.107 3.893 26 C -0.149 4.149 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.125 -12.622 6.606 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.074 3.926 11 C -0.182 4.182 12 C -0.007 4.007 13 N -0.322 5.322 14 C 0.348 3.652 15 O -0.398 6.398 16 C -0.054 4.054 17 C -0.115 4.115 18 C -0.129 4.129 19 C -0.083 4.083 20 C -0.027 4.027 21 N -0.207 5.207 22 C -0.116 4.116 23 C -0.224 4.224 24 N -0.014 5.014 25 C -0.016 4.016 26 C -0.190 4.190 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.201 0.799 38 H 0.196 0.804 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.328 -13.136 6.793 22.030 hybrid contribution 0.442 1.856 -0.593 1.998 sum 16.770 -11.280 6.200 21.140 Atomic orbital electron populations 1.69697 1.05127 1.25962 1.57091 1.24675 0.95212 0.97244 1.01767 0.86564 0.79165 0.84993 0.77833 1.21021 1.21693 1.20386 1.19048 0.80458 0.94722 1.43565 0.89162 1.42781 1.04054 1.01867 1.90181 1.20140 0.90202 0.89607 0.92698 1.22254 0.97180 0.96143 1.02585 1.21747 1.02455 0.95173 0.81319 1.48240 1.06244 1.60641 1.17074 1.17656 0.84410 0.79629 0.83554 1.90871 1.30398 1.55380 1.63111 1.20222 1.06679 0.82126 0.96373 1.21178 0.99464 1.00907 0.89924 1.20963 0.99950 0.94030 0.97919 1.20410 0.98810 0.93282 0.95784 1.21018 1.06519 0.89035 0.86088 1.70680 1.21304 1.11603 1.17116 1.22540 1.01969 0.97810 0.89296 1.22711 1.15657 0.88481 0.95558 1.42753 1.43249 1.05768 1.09657 1.22020 0.83532 0.99708 0.96340 1.22728 1.00591 0.94116 1.01567 0.92953 0.80582 0.92353 0.91710 0.90035 0.88930 0.90656 0.82686 0.83163 0.82741 0.79921 0.80351 0.90731 0.90852 0.92070 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.97 55.49 0.78 -27.58 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.75 -16.37 4.92 -53.39 -0.26 -16.64 16 10 C 0.18 3.11 2.73 -67.89 -0.19 2.93 16 11 C -0.14 -1.99 5.55 -26.61 -0.15 -2.14 16 12 C 0.12 1.39 6.44 -3.71 -0.02 1.36 16 13 N -0.59 -7.28 2.97 -173.91 -0.52 -7.79 16 14 C 0.56 7.48 6.77 -12.69 -0.09 7.39 16 15 O -0.52 -8.42 16.53 5.23 0.09 -8.34 16 16 C 0.05 0.62 4.50 -81.86 -0.37 0.25 16 17 C -0.09 -0.89 9.73 -39.18 -0.38 -1.27 16 18 C -0.10 -0.81 10.04 -39.67 -0.40 -1.20 16 19 C -0.06 -0.57 10.09 -39.30 -0.40 -0.96 16 20 C 0.22 2.60 7.80 -156.03 -1.22 1.38 16 21 N -0.49 -6.30 11.31 -12.76 -0.14 -6.44 16 22 C 0.04 0.39 11.83 -17.94 -0.21 0.18 16 23 C -0.09 -1.01 11.32 -16.58 -0.19 -1.20 16 24 N -0.34 -4.11 2.97 -58.75 -0.17 -4.29 16 25 C 0.11 1.30 6.34 -3.48 -0.02 1.28 16 26 C -0.15 -2.25 5.67 -26.39 -0.15 -2.40 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.36 7.90 5.66 -40.82 -0.23 7.67 16 29 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.18 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.18 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -33.73 348.47 -9.31 -43.05 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.59 Total: 7.20 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -4.03 Total: -1.06 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.32 Total: -62.73 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.73 -9.31 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996795988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.510 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds