Wall clock time and date at job start Fri Apr 10 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47272 * 29.99837 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99807 * 3 2 1 7 7 C 1.38806 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00372 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46111 * 154.99862 * 10 9 7 12 12 C 1.53194 * 109.31136 * 181.36837 * 11 10 9 13 13 N 1.46920 * 108.78023 * 305.36804 * 12 11 10 14 14 C 1.34769 * 120.63123 * 233.58997 * 13 12 11 15 15 O 1.21652 * 120.00118 * 5.73473 * 14 13 12 16 16 C 1.47052 * 119.99988 * 185.74159 * 14 13 12 17 17 C 1.37598 * 119.93068 * 261.16085 * 16 14 13 18 18 C 1.39942 * 120.01828 * 180.02562 * 17 16 14 19 19 C 1.36211 * 119.91530 * 359.97438 * 18 17 16 20 20 C 1.40918 * 119.80533 * 359.97438 * 19 18 17 21 21 N 1.32567 * 132.19303 * 180.28037 * 20 19 18 22 22 C 1.33235 * 109.14082 * 180.16636 * 21 20 19 23 23 C 1.35443 * 108.57941 * 359.59557 * 22 21 20 24 24 N 1.36255 * 107.17603 * 0.24754 * 23 22 21 25 25 C 1.46931 * 118.73931 * 53.85662 * 13 12 11 26 26 C 1.53045 * 109.44858 * 275.05992 * 10 9 7 27 27 H 0.96997 * 120.00243 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99642 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.45753 * 35.02483 * 10 9 7 30 30 H 1.08997 * 109.49698 * 61.42041 * 11 10 9 31 31 H 1.08996 * 109.52276 * 301.33700 * 11 10 9 32 32 H 1.08998 * 109.58546 * 185.57506 * 12 11 10 33 33 H 1.09008 * 109.70219 * 65.22508 * 12 11 10 34 34 H 1.08001 * 119.99207 * 359.97438 * 17 16 14 35 35 H 1.07998 * 120.04342 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.09840 * 180.02562 * 19 18 17 37 37 H 1.08009 * 125.71194 * 179.86372 * 22 21 20 38 38 H 1.08005 * 126.41548 * 180.22716 * 23 22 21 39 39 H 1.08997 * 109.58683 * 65.92497 * 25 13 12 40 40 H 1.08993 * 109.58848 * 186.36081 * 25 13 12 41 41 H 1.09005 * 109.49381 * 298.57456 * 26 10 9 42 42 H 1.08997 * 109.49309 * 58.66332 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5000 -2.2582 -0.6082 12 6 6.2502 -3.5936 -0.6379 13 7 6.2667 -4.1570 0.7189 14 6 7.4286 -4.5184 1.2983 15 8 8.4846 -4.2838 0.7417 16 6 7.4199 -5.1963 2.6032 17 6 7.6530 -4.4764 3.7524 18 6 7.6457 -5.1198 4.9951 19 6 7.4072 -6.4590 5.0653 20 6 7.1681 -7.1907 3.8850 21 7 6.9096 -8.4729 3.6692 22 6 6.7623 -8.6747 2.3605 23 6 6.9214 -7.4914 1.7209 24 7 7.1775 -6.5507 2.6727 25 6 4.9918 -4.3247 1.4298 26 6 4.2563 -2.9760 1.4385 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3619 0.0014 29 1 3.5652 -3.2059 -0.5892 30 1 6.0566 -1.5416 -0.0043 31 1 5.3972 -1.8760 -1.6238 32 1 7.2727 -3.4307 -0.9784 33 1 5.7454 -4.2837 -1.3140 34 1 7.8424 -3.4146 3.6953 35 1 7.8281 -4.5550 5.8974 36 1 7.4004 -6.9584 6.0229 37 1 6.5472 -9.6223 1.8890 38 1 6.8577 -7.3248 0.6557 39 1 4.3843 -5.0720 0.9194 40 1 5.1838 -4.6443 2.4540 41 1 4.8246 -2.2525 2.0232 42 1 3.2679 -3.1048 1.8796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996795988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:18 Heat of formation + Delta-G solvation = 59.369863 kcal Electronic energy + Delta-G solvation = -26072.390673 eV Core-core repulsion = 22439.535221 eV Total energy + Delta-G solvation = -3632.855452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.92682 -41.41586 -39.05885 -38.09564 -36.37274 -34.82309 -33.93934 -32.38999 -31.67071 -31.23289 -29.87881 -27.09920 -25.60478 -24.47735 -23.99082 -23.73032 -23.01130 -21.86008 -20.61107 -19.58959 -19.13173 -18.45747 -17.80455 -17.27585 -16.83296 -16.72647 -16.43964 -16.16385 -15.90547 -15.33220 -15.14480 -15.09060 -14.86277 -14.65204 -14.52912 -14.17440 -13.66767 -13.46001 -13.38797 -13.14733 -12.95966 -12.83316 -12.71593 -12.30939 -12.17245 -12.10028 -12.02969 -11.80544 -11.59546 -11.40519 -11.13348 -10.95218 -9.96632 -9.92466 -9.33353 -8.93126 -8.01931 -5.35666 -0.55977 0.22746 0.78132 1.38404 1.40995 1.48194 1.48528 1.71307 1.90951 2.43308 2.48566 2.92106 3.26224 3.29318 3.47222 3.50227 3.74115 3.86078 3.91933 4.02074 4.03802 4.22005 4.28152 4.31040 4.41805 4.47125 4.51665 4.59084 4.68071 4.74285 4.80879 4.89539 4.95298 4.98840 5.09268 5.15490 5.35126 5.39043 5.47603 5.57816 5.77564 5.87655 6.00260 6.21991 6.65178 6.76241 7.08124 7.84048 8.02188 9.19421 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003291 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.086106 B = 8505.060694 C = 8656.151259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.252 1.252 7 C -0.227 4.227 8 H 0.060 0.940 9 N -0.751 5.751 10 C 0.176 3.824 11 C -0.131 4.131 12 C 0.119 3.881 13 N -0.586 5.586 14 C 0.570 3.430 15 O -0.554 6.554 16 C 0.021 3.979 17 C -0.084 4.084 18 C -0.092 4.092 19 C -0.068 4.068 20 C 0.196 3.804 21 N -0.519 5.519 22 C 0.031 3.969 23 C -0.107 4.107 24 N -0.345 5.345 25 C 0.121 3.879 26 C -0.139 4.139 27 H 0.257 0.743 28 H 0.365 0.635 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.208 0.792 38 H 0.189 0.811 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.328 -12.415 7.650 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.177 1.177 7 C -0.358 4.358 8 H 0.078 0.922 9 N -0.393 5.393 10 C 0.068 3.932 11 C -0.170 4.170 12 C -0.003 4.003 13 N -0.317 5.317 14 C 0.356 3.644 15 O -0.432 6.432 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.046 4.046 21 N -0.239 5.239 22 C -0.121 4.121 23 C -0.239 4.239 24 N -0.019 5.019 25 C -0.002 4.002 26 C -0.179 4.179 27 H 0.066 0.934 28 H 0.198 0.802 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.189 0.811 35 H 0.208 0.792 36 H 0.195 0.805 37 H 0.225 0.775 38 H 0.206 0.794 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.583 -12.968 7.838 23.978 hybrid contribution -0.230 1.688 -0.883 1.918 sum 18.353 -11.280 6.955 22.637 Atomic orbital electron populations 1.69877 1.07147 1.26591 1.59854 1.25460 0.95998 1.01119 1.02860 0.85453 0.78616 0.79941 0.77977 1.20628 1.22646 1.17680 1.19010 0.82531 0.93368 1.40845 0.92243 1.42802 1.02454 1.03875 1.90207 1.20391 0.91371 0.87432 0.94016 1.22115 0.95035 0.97309 1.02524 1.21745 1.02465 0.94500 0.81579 1.48236 1.06111 1.60328 1.17075 1.17804 0.83837 0.79010 0.83761 1.90850 1.31415 1.56793 1.64139 1.20193 1.09673 0.82320 0.96312 1.21611 0.97205 1.01711 0.89985 1.21386 0.98053 0.93603 0.98517 1.20846 0.98257 0.93898 0.95793 1.21573 1.06799 0.89189 0.87036 1.70664 1.22707 1.12400 1.18162 1.23012 1.01346 0.98869 0.88862 1.22996 1.16191 0.88626 0.96108 1.42823 1.43311 1.05875 1.09855 1.21853 0.83190 0.97921 0.97213 1.22500 0.99947 0.95777 0.99713 0.93437 0.80239 0.93143 0.91739 0.89506 0.88660 0.88986 0.81090 0.79231 0.80503 0.77494 0.79375 0.89923 0.89817 0.92013 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.50 13.97 21.65 0.30 -61.20 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 3 Si 0.95 43.94 27.74 68.60 1.90 45.84 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 7 C -0.23 -12.18 10.41 84.03 0.87 -11.30 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 9 N -0.75 -32.17 4.92 -322.81 -1.59 -33.76 16 10 C 0.18 5.76 2.73 45.02 0.12 5.89 16 11 C -0.13 -3.38 5.55 30.67 0.17 -3.21 16 12 C 0.12 2.62 6.44 86.36 0.56 3.17 16 13 N -0.59 -13.34 2.97 -822.37 -2.44 -15.78 16 14 C 0.57 14.19 6.77 86.56 0.59 14.77 16 15 O -0.55 -17.16 16.53 -4.19 -0.07 -17.23 16 16 C 0.02 0.46 4.50 40.37 0.18 0.64 16 17 C -0.08 -1.36 9.73 22.53 0.22 -1.14 16 18 C -0.09 -1.09 10.04 22.21 0.22 -0.86 16 19 C -0.07 -1.06 10.09 22.45 0.23 -0.83 16 20 C 0.20 4.47 7.80 134.10 1.05 5.51 16 21 N -0.52 -13.00 11.31 -194.29 -2.20 -15.20 16 22 C 0.03 0.65 11.83 83.83 0.99 1.64 16 23 C -0.11 -2.28 11.32 83.36 0.94 -1.33 16 24 N -0.35 -7.89 2.97 -339.78 -1.01 -8.90 16 25 C 0.12 2.73 6.34 86.51 0.55 3.28 16 26 C -0.14 -4.01 5.67 30.82 0.17 -3.84 16 27 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.36 15.16 5.66 -92.70 -0.52 14.64 16 29 H 0.05 1.74 8.08 -2.39 -0.02 1.73 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.10 2.14 7.00 -2.39 -0.02 2.12 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.78 6.37 -2.39 -0.02 1.77 16 41 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.55 348.47 2.69 -71.86 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.46 Total: 25.08 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 7.33 Total: 9.29 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -6.93 Total: -134.83 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.07 Total: -17.23 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -74.55 2.69 -71.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996795988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.227 kcal (2) G-P(sol) polarization free energy of solvation -74.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds