Wall clock time and date at job start Fri Apr 10 2020 22:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47143 * 239.99784 * 3 2 1 5 5 H 1.48500 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46991 * 119.99789 * 3 2 1 7 7 C 1.38811 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00448 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.46220 * 155.00044 * 10 9 7 12 12 C 1.53195 * 109.31215 * 181.38272 * 11 10 9 13 13 N 1.46923 * 108.77664 * 305.36999 * 12 11 10 14 14 C 1.34783 * 120.62625 * 233.58379 * 13 12 11 15 15 O 1.21583 * 120.00257 * 5.81378 * 14 13 12 16 16 C 1.47649 * 119.99653 * 185.81246 * 14 13 12 17 17 C 1.41772 * 120.37570 * 37.39144 * 16 14 13 18 18 C 1.34546 * 120.15201 * 179.97438 * 17 16 14 19 19 N 1.36718 * 120.95037 * 0.02562 * 18 17 16 20 20 C 1.36437 * 132.26512 * 179.97438 * 19 18 17 21 21 C 1.35456 * 107.22272 * 179.97438 * 20 19 18 22 22 N 1.33188 * 108.61756 * 359.97438 * 21 20 19 23 23 C 1.32652 * 109.12745 * 359.97438 * 22 21 20 24 24 C 1.38438 * 120.37105 * 217.36597 * 16 14 13 25 25 C 1.46922 * 118.74129 * 53.85454 * 13 12 11 26 26 C 1.53040 * 109.45891 * 275.06974 * 10 9 7 27 27 H 0.97001 * 120.00027 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99738 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.45945 * 35.02591 * 10 9 7 30 30 H 1.09004 * 109.49771 * 61.43758 * 11 10 9 31 31 H 1.08994 * 109.52535 * 301.35381 * 11 10 9 32 32 H 1.08995 * 109.58565 * 185.57596 * 12 11 10 33 33 H 1.09004 * 109.70179 * 65.22349 * 12 11 10 34 34 H 1.08004 * 119.92448 * 359.97438 * 17 16 14 35 35 H 1.07991 * 119.52406 * 180.28000 * 18 17 16 36 36 H 1.08000 * 126.39037 * 359.97135 * 20 19 18 37 37 H 1.07996 * 125.69296 * 180.02562 * 21 20 19 38 38 H 1.08010 * 120.45718 * 0.02562 * 24 16 14 39 39 H 1.09005 * 109.58451 * 65.93361 * 25 13 12 40 40 H 1.09002 * 109.58659 * 186.35169 * 25 13 12 41 41 H 1.09005 * 109.49766 * 298.56697 * 26 10 9 42 42 H 1.09007 * 109.49755 * 58.65833 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1804 -4.7522 0.6092 12 6 1.9619 -6.0695 0.6392 13 7 2.4414 -6.3658 -0.7176 14 6 2.1734 -7.5531 -1.2965 15 8 1.4419 -8.3493 -0.7404 16 6 2.7683 -7.8869 -2.6059 17 6 4.0930 -7.4870 -2.9144 18 6 4.6308 -7.7940 -4.1089 19 7 3.9170 -8.4919 -5.0430 20 6 4.2244 -8.9195 -6.3016 21 6 3.1371 -9.5696 -6.7811 22 7 2.1842 -9.5479 -5.8509 23 6 2.6328 -8.8996 -4.7841 24 6 2.0390 -8.5944 -3.5462 25 6 3.2237 -5.3457 -1.4289 26 6 2.4233 -4.0346 -1.4379 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9684 -3.5505 0.5893 30 1 0.2814 -4.8763 0.0055 31 1 0.9008 -4.4718 1.6247 32 1 1.3098 -6.8735 0.9801 33 1 2.8120 -5.9771 1.3152 34 1 4.6718 -6.9346 -2.1889 35 1 5.6424 -7.4882 -4.3315 36 1 5.1601 -8.7678 -6.8191 37 1 3.0567 -10.0297 -7.7548 38 1 1.0281 -8.9087 -3.3316 39 1 4.1748 -5.1931 -0.9187 40 1 3.4044 -5.6722 -2.4531 41 1 1.5126 -4.1653 -2.0224 42 1 3.0290 -3.2430 -1.8794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996797089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:21 Heat of formation + Delta-G solvation = 82.016109 kcal Electronic energy + Delta-G solvation = -25552.406531 eV Core-core repulsion = 21920.533094 eV Total energy + Delta-G solvation = -3631.873438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.11911 -40.36849 -37.67745 -37.17155 -34.59563 -33.92291 -32.17714 -31.21666 -30.33939 -29.53284 -28.95311 -25.55730 -24.40494 -23.63376 -22.92248 -22.40292 -22.04573 -20.46335 -19.18356 -18.24618 -17.89379 -17.13673 -16.45478 -16.31208 -16.05062 -15.22409 -14.93346 -14.84559 -14.72787 -14.30241 -13.96132 -13.77443 -13.63476 -13.51242 -13.14854 -13.11347 -12.56860 -12.29696 -12.12357 -11.89623 -11.56335 -11.23746 -11.01220 -10.91724 -10.85608 -10.54660 -10.45803 -10.31019 -9.99545 -9.88317 -9.72030 -9.17960 -8.94281 -8.64188 -8.17781 -7.03118 -5.82025 -3.11725 0.24100 0.75383 2.24095 2.38118 2.67360 2.87092 3.30401 3.38968 3.43518 3.45150 3.89821 4.05914 4.28529 4.33507 4.52963 4.62666 4.91948 4.96271 5.06880 5.11510 5.24952 5.27006 5.28128 5.35535 5.46238 5.53851 5.58530 5.65193 5.70577 5.86531 5.92426 6.02819 6.15345 6.26162 6.29447 6.32818 6.44321 6.54272 6.66488 6.81773 6.97377 7.34144 7.52262 7.62532 8.03487 8.36021 9.47160 10.04501 10.38929 11.40367 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002965 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.733372 B = 9440.311301 C =10253.822341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.116 3.884 13 N -0.597 5.597 14 C 0.564 3.436 15 O -0.536 6.536 16 C -0.113 4.113 17 C -0.117 4.117 18 C 0.047 3.953 19 N -0.355 5.355 20 C -0.093 4.093 21 C 0.031 3.969 22 N -0.481 5.481 23 C 0.211 3.789 24 C -0.009 4.009 25 C 0.095 3.905 26 C -0.151 4.151 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 -17.610 -8.863 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.179 4.179 12 C -0.006 4.006 13 N -0.329 5.329 14 C 0.352 3.648 15 O -0.414 6.414 16 C -0.122 4.122 17 C -0.138 4.138 18 C -0.074 4.074 19 N -0.027 5.027 20 C -0.225 4.225 21 C -0.122 4.122 22 N -0.200 5.200 23 C -0.031 4.031 24 C -0.031 4.031 25 C -0.028 4.028 26 C -0.192 4.192 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.202 0.798 37 H 0.200 0.800 38 H 0.179 0.821 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.985 -18.177 -8.627 22.924 hybrid contribution 1.112 1.508 -0.186 1.883 sum 12.097 -16.669 -8.812 22.402 Atomic orbital electron populations 1.69648 1.05142 1.25871 1.57280 1.24756 0.95495 0.97728 1.02852 0.86285 0.78545 0.83617 0.77813 1.21276 1.21688 1.21251 1.19170 0.90902 0.84091 1.43191 0.91228 1.42431 1.05835 0.99669 1.88479 1.20164 0.94471 0.86145 0.92347 1.22211 0.99281 0.93962 1.02400 1.21686 0.98931 0.98382 0.81589 1.48045 1.53565 1.14221 1.17056 1.17923 0.80721 0.81885 0.84316 1.90802 1.36887 1.49217 1.64516 1.19906 0.95048 1.01691 0.95590 1.21041 0.95220 1.00975 0.96516 1.21466 0.98321 0.98340 0.89241 1.42862 1.13067 1.34590 1.12164 1.22795 1.03925 1.09980 0.85826 1.22610 0.89088 1.00815 0.99712 1.70702 1.29762 1.19899 0.99683 1.20762 0.83183 1.02092 0.97070 1.20607 1.00777 0.94125 0.87545 1.22383 0.94600 0.88931 0.96846 1.22777 1.00075 0.94468 1.01910 0.93381 0.78219 0.93376 0.91699 0.90376 0.89117 0.91216 0.82074 0.81327 0.79791 0.79980 0.82112 0.91087 0.89634 0.92088 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -17.29 5.12 -53.39 -0.27 -17.56 16 10 C 0.18 3.24 2.73 -67.89 -0.19 3.06 16 11 C -0.14 -2.20 5.55 -26.61 -0.15 -2.34 16 12 C 0.12 1.55 6.44 -3.71 -0.02 1.52 16 13 N -0.60 -7.73 2.97 -173.69 -0.52 -8.24 16 14 C 0.56 7.84 7.37 -12.42 -0.09 7.74 16 15 O -0.54 -9.12 16.30 5.29 0.09 -9.04 16 16 C -0.11 -1.32 5.24 -104.63 -0.55 -1.87 16 17 C -0.12 -0.99 7.31 -39.54 -0.29 -1.28 16 18 C 0.05 0.36 10.91 -16.68 -0.18 0.17 16 19 N -0.35 -3.50 2.94 -62.75 -0.18 -3.69 16 20 C -0.09 -0.75 11.74 -16.50 -0.19 -0.94 16 21 C 0.03 0.30 11.83 -17.96 -0.21 0.08 16 22 N -0.48 -6.28 11.31 -12.80 -0.14 -6.42 16 23 C 0.21 2.63 7.79 -155.96 -1.22 1.41 16 24 C -0.01 -0.12 9.73 -38.60 -0.38 -0.49 16 25 C 0.10 1.10 4.86 -3.49 -0.02 1.08 16 26 C -0.15 -2.39 5.67 -26.39 -0.15 -2.54 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 29 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.16 1.02 6.30 -52.48 -0.33 0.69 16 35 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.16 1.99 8.04 -52.48 -0.42 1.57 16 39 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.09 0.86 4.55 -51.93 -0.24 0.62 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -34.07 346.03 -9.43 -43.50 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.44 Total: 7.80 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.88 Total: -1.38 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.39 Total: -62.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.07 -9.43 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996797089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.518 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds