Wall clock time and date at job start Fri Apr 10 2020 22:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47143 * 239.99784 * 3 2 1 5 5 H 1.48500 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46991 * 119.99789 * 3 2 1 7 7 C 1.38811 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00448 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.46220 * 155.00044 * 10 9 7 12 12 C 1.53195 * 109.31215 * 181.38272 * 11 10 9 13 13 N 1.46923 * 108.77664 * 305.36999 * 12 11 10 14 14 C 1.34783 * 120.62625 * 233.58379 * 13 12 11 15 15 O 1.21583 * 120.00257 * 5.81378 * 14 13 12 16 16 C 1.47649 * 119.99653 * 185.81246 * 14 13 12 17 17 C 1.41772 * 120.37570 * 37.39144 * 16 14 13 18 18 C 1.34546 * 120.15201 * 179.97438 * 17 16 14 19 19 N 1.36718 * 120.95037 * 0.02562 * 18 17 16 20 20 C 1.36437 * 132.26512 * 179.97438 * 19 18 17 21 21 C 1.35456 * 107.22272 * 179.97438 * 20 19 18 22 22 N 1.33188 * 108.61756 * 359.97438 * 21 20 19 23 23 C 1.32652 * 109.12745 * 359.97438 * 22 21 20 24 24 C 1.38438 * 120.37105 * 217.36597 * 16 14 13 25 25 C 1.46922 * 118.74129 * 53.85454 * 13 12 11 26 26 C 1.53040 * 109.45891 * 275.06974 * 10 9 7 27 27 H 0.97001 * 120.00027 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99738 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.45945 * 35.02591 * 10 9 7 30 30 H 1.09004 * 109.49771 * 61.43758 * 11 10 9 31 31 H 1.08994 * 109.52535 * 301.35381 * 11 10 9 32 32 H 1.08995 * 109.58565 * 185.57596 * 12 11 10 33 33 H 1.09004 * 109.70179 * 65.22349 * 12 11 10 34 34 H 1.08004 * 119.92448 * 359.97438 * 17 16 14 35 35 H 1.07991 * 119.52406 * 180.28000 * 18 17 16 36 36 H 1.08000 * 126.39037 * 359.97135 * 20 19 18 37 37 H 1.07996 * 125.69296 * 180.02562 * 21 20 19 38 38 H 1.08010 * 120.45718 * 0.02562 * 24 16 14 39 39 H 1.09005 * 109.58451 * 65.93361 * 25 13 12 40 40 H 1.09002 * 109.58659 * 186.35169 * 25 13 12 41 41 H 1.09005 * 109.49766 * 298.56697 * 26 10 9 42 42 H 1.09007 * 109.49755 * 58.65833 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1804 -4.7522 0.6092 12 6 1.9619 -6.0695 0.6392 13 7 2.4414 -6.3658 -0.7176 14 6 2.1734 -7.5531 -1.2965 15 8 1.4419 -8.3493 -0.7404 16 6 2.7683 -7.8869 -2.6059 17 6 4.0930 -7.4870 -2.9144 18 6 4.6308 -7.7940 -4.1089 19 7 3.9170 -8.4919 -5.0430 20 6 4.2244 -8.9195 -6.3016 21 6 3.1371 -9.5696 -6.7811 22 7 2.1842 -9.5479 -5.8509 23 6 2.6328 -8.8996 -4.7841 24 6 2.0390 -8.5944 -3.5462 25 6 3.2237 -5.3457 -1.4289 26 6 2.4233 -4.0346 -1.4379 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9684 -3.5505 0.5893 30 1 0.2814 -4.8763 0.0055 31 1 0.9008 -4.4718 1.6247 32 1 1.3098 -6.8735 0.9801 33 1 2.8120 -5.9771 1.3152 34 1 4.6718 -6.9346 -2.1889 35 1 5.6424 -7.4882 -4.3315 36 1 5.1601 -8.7678 -6.8191 37 1 3.0567 -10.0297 -7.7548 38 1 1.0281 -8.9087 -3.3316 39 1 4.1748 -5.1931 -0.9187 40 1 3.4044 -5.6722 -2.4531 41 1 1.5126 -4.1653 -2.0224 42 1 3.0290 -3.2430 -1.8794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996797089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:21 Heat of formation + Delta-G solvation = 60.216228 kcal Electronic energy + Delta-G solvation = -25553.351845 eV Core-core repulsion = 21920.533094 eV Total energy + Delta-G solvation = -3632.818751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.83603 -41.44214 -38.87334 -38.06172 -36.17984 -34.75073 -33.83359 -32.33504 -31.23159 -30.98243 -29.89320 -26.89824 -25.54942 -24.82054 -23.95157 -23.64157 -22.77688 -21.72166 -20.34064 -19.10959 -18.94922 -18.76549 -17.33276 -17.27409 -16.90051 -16.68690 -16.22201 -15.70880 -15.58340 -15.46080 -15.35818 -15.04044 -14.84657 -14.55894 -14.39521 -14.14387 -13.72271 -13.33077 -13.24138 -12.99224 -12.82629 -12.77098 -12.52251 -12.23521 -12.21143 -12.03112 -11.97954 -11.68106 -11.30548 -11.23712 -11.11695 -10.83118 -9.87172 -9.76322 -8.99087 -8.89576 -7.91471 -5.20414 -0.56201 0.06182 1.48355 1.49533 1.52107 1.58053 1.60424 1.81029 1.96545 2.45806 2.58548 3.07744 3.39425 3.42115 3.50973 3.71759 3.82327 3.89246 3.98848 4.06966 4.17127 4.28895 4.38284 4.40833 4.44829 4.52787 4.62720 4.65127 4.77121 4.82894 4.85558 4.88110 4.93672 5.03067 5.08239 5.29800 5.36426 5.49633 5.55005 5.59690 5.61604 6.02093 6.27771 6.30274 6.80759 6.96175 7.35630 8.12083 8.34373 9.32253 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002965 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.733372 B = 9440.311301 C =10253.822341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.233 4.233 8 H 0.083 0.917 9 N -0.740 5.740 10 C 0.173 3.827 11 C -0.130 4.130 12 C 0.123 3.877 13 N -0.595 5.595 14 C 0.562 3.438 15 O -0.577 6.577 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.066 3.934 19 N -0.360 5.360 20 C -0.072 4.072 21 C 0.010 3.990 22 N -0.525 5.525 23 C 0.181 3.819 24 C -0.035 4.035 25 C 0.104 3.896 26 C -0.143 4.143 27 H 0.249 0.751 28 H 0.368 0.632 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.191 0.809 35 H 0.220 0.780 36 H 0.232 0.768 37 H 0.209 0.791 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.035 0.965 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -17.819 -9.966 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.229 1.229 6 H -0.203 1.203 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.379 5.379 10 C 0.065 3.935 11 C -0.169 4.169 12 C 0.000 4.000 13 N -0.326 5.326 14 C 0.352 3.648 15 O -0.457 6.457 16 C -0.123 4.123 17 C -0.148 4.148 18 C -0.055 4.055 19 N -0.032 5.032 20 C -0.204 4.204 21 C -0.142 4.142 22 N -0.246 5.246 23 C -0.060 4.060 24 C -0.056 4.056 25 C -0.018 4.018 26 C -0.183 4.183 27 H 0.057 0.943 28 H 0.199 0.801 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.208 0.792 35 H 0.237 0.763 36 H 0.248 0.752 37 H 0.225 0.775 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.054 0.946 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.573 -18.418 -9.739 26.011 hybrid contribution -0.267 1.462 0.085 1.488 sum 15.306 -16.956 -9.653 24.799 Atomic orbital electron populations 1.69827 1.06829 1.25944 1.59962 1.25580 0.96263 1.01225 1.04196 0.85234 0.77121 0.79243 0.78313 1.20136 1.22924 1.20255 1.19629 0.91612 0.84941 1.40337 0.89871 1.42705 1.05373 1.01210 1.88621 1.20447 0.94492 0.84443 0.94119 1.22077 0.98520 0.94781 1.01526 1.21618 0.99556 0.96279 0.82516 1.48091 1.53376 1.14241 1.16874 1.18301 0.80023 0.81656 0.84847 1.90778 1.38675 1.50561 1.65730 1.19816 0.96593 1.01936 0.93998 1.21299 0.93757 1.01861 0.97843 1.22270 0.99573 0.95677 0.87935 1.43147 1.12305 1.34572 1.13146 1.23561 1.04740 1.07358 0.84726 1.23244 0.89115 1.01494 1.00371 1.70630 1.31874 1.21129 1.00934 1.20671 0.84814 1.03523 0.96988 1.20486 1.00595 0.95833 0.88737 1.22487 0.94625 0.85929 0.98761 1.22562 0.99627 0.96862 0.99298 0.94277 0.80072 0.92358 0.93804 0.90734 0.89844 0.88402 0.79240 0.76333 0.75210 0.77461 0.84153 0.87461 0.87364 0.94578 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -35.69 5.12 -322.83 -1.65 -37.34 16 10 C 0.17 6.12 2.73 45.02 0.12 6.24 16 11 C -0.13 -4.10 5.55 30.67 0.17 -3.93 16 12 C 0.12 3.11 6.44 86.36 0.56 3.66 16 13 N -0.59 -14.41 2.97 -821.69 -2.44 -16.84 16 14 C 0.56 15.43 7.37 86.73 0.64 16.07 16 15 O -0.58 -20.26 16.30 -3.98 -0.06 -20.33 16 16 C -0.11 -2.56 5.24 -19.87 -0.10 -2.67 16 17 C -0.13 -1.69 7.31 22.30 0.16 -1.53 16 18 C 0.07 0.68 10.91 83.09 0.91 1.58 16 19 N -0.36 -5.99 2.94 -352.44 -1.04 -7.03 16 20 C -0.07 -0.88 11.74 83.33 0.98 0.10 16 21 C 0.01 0.17 11.83 83.84 0.99 1.16 16 22 N -0.52 -13.81 11.31 -194.41 -2.20 -16.01 16 23 C 0.18 4.49 7.79 133.97 1.04 5.53 16 24 C -0.04 -0.91 9.73 22.91 0.22 -0.69 16 25 C 0.10 2.06 4.86 86.51 0.42 2.48 16 26 C -0.14 -4.31 5.67 30.82 0.17 -4.13 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.37 19.79 7.80 -92.70 -0.72 19.07 16 29 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 33 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.19 1.36 6.30 -2.91 -0.02 1.34 16 35 H 0.22 0.02 8.06 -2.92 -0.02 -0.01 16 36 H 0.23 0.50 8.06 -2.91 -0.02 0.47 16 37 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.14 3.96 8.04 -2.91 -0.02 3.94 16 39 H 0.11 1.48 8.08 -2.38 -0.02 1.46 16 40 H 0.11 1.75 4.55 -2.39 -0.01 1.74 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -79.07 346.03 2.84 -76.23 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.33 Total: 25.25 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 7.59 Total: 8.39 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -7.04 Total: -136.30 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.07 2.84 -76.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996797089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.446 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds