Wall clock time and date at job start Fri Apr 10 2020 22:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48497 * 109.47370 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46819 * 299.99922 * 3 2 1 6 6 H 1.48499 * 109.47082 * 59.99507 * 3 2 1 7 7 C 1.38812 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99819 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46090 * 205.00394 * 10 9 7 12 12 C 1.53190 * 109.31368 * 178.62747 * 11 10 9 13 13 N 1.46932 * 108.77316 * 54.63555 * 12 11 10 14 14 C 1.34771 * 120.62738 * 126.37152 * 13 12 11 15 15 O 1.21534 * 119.99896 * 187.92849 * 14 13 12 16 16 C 1.48059 * 120.00614 * 7.92170 * 14 13 12 17 17 C 1.39766 * 119.47202 * 189.69581 * 16 14 13 18 18 C 1.38140 * 119.56783 * 179.75234 * 17 16 14 19 19 C 1.39244 * 118.38445 * 0.24799 * 18 17 16 20 20 N 1.37351 * 133.61784 * 179.97438 * 19 18 17 21 21 H 0.97006 * 125.05256 * 0.03451 * 20 19 18 22 22 C 1.36713 * 109.89854 * 180.02562 * 20 19 18 23 23 C 1.34285 * 110.02224 * 0.02562 * 22 20 19 24 24 C 1.41192 * 119.10059 * 0.02562 * 19 18 17 25 25 N 1.32457 * 119.46812 * 9.97205 * 16 14 13 26 26 C 1.46923 * 118.73611 * 306.64217 * 13 12 11 27 27 C 1.52759 * 109.01070 * 53.31128 * 26 13 12 28 28 H 0.97001 * 120.00586 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00482 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.45685 * 324.97328 * 10 9 7 31 31 H 1.09003 * 109.49683 * 58.67323 * 11 10 9 32 32 H 1.09008 * 109.49797 * 298.58080 * 11 10 9 33 33 H 1.08997 * 109.58440 * 294.84819 * 12 11 10 34 34 H 1.08999 * 109.70254 * 174.49052 * 12 11 10 35 35 H 1.07992 * 120.21528 * 0.02562 * 17 16 14 36 36 H 1.08008 * 120.80434 * 180.23188 * 18 17 16 37 37 H 1.08001 * 124.98663 * 180.02562 * 22 20 19 38 38 H 1.07998 * 126.48062 * 180.02562 * 23 22 20 39 39 H 1.09003 * 109.58457 * 173.14840 * 26 13 12 40 40 H 1.08997 * 109.59006 * 293.56998 * 26 13 12 41 41 H 1.08995 * 109.56557 * 185.55084 * 27 26 13 42 42 H 1.09000 * 109.36037 * 65.49666 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.1802 -4.7525 -0.6071 12 6 1.9616 -6.0697 -0.6369 13 7 2.4418 -6.3655 0.7198 14 6 2.1734 -7.5520 1.2998 15 8 2.4486 -7.7327 2.4697 16 6 1.5429 -8.6355 0.5118 17 6 1.0838 -9.7828 1.1647 18 6 0.4907 -10.7927 0.4322 19 6 0.3755 -10.6308 -0.9460 20 7 -0.1434 -11.4095 -1.9514 21 1 -0.5493 -12.2818 -1.8274 22 6 -0.0028 -10.7726 -3.1529 23 6 0.5988 -9.5851 -2.9762 24 6 0.8661 -9.4485 -1.5419 25 7 1.4282 -8.5042 -0.8012 26 6 3.2150 -5.3407 1.4345 27 6 2.4243 -4.0337 1.4389 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.9681 -3.5506 -0.5891 31 1 0.9005 -4.4723 -1.6227 32 1 0.2814 -4.8762 -0.0028 33 1 2.8114 -5.9752 -1.3129 34 1 1.3112 -6.8752 -0.9780 35 1 1.1880 -9.8773 2.2354 36 1 0.1254 -11.6862 0.9167 37 1 -0.3279 -11.1667 -4.1045 38 1 0.8393 -8.8664 -3.7456 39 1 3.3895 -5.6642 2.4607 40 1 4.1692 -5.1855 0.9310 41 1 3.0301 -3.2421 1.8796 42 1 1.5139 -4.1642 2.0239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996797845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:23 Heat of formation + Delta-G solvation = 44.728667 kcal Electronic energy + Delta-G solvation = -25596.549310 eV Core-core repulsion = 21963.058968 eV Total energy + Delta-G solvation = -3633.490342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.63323 -41.21354 -39.00796 -38.35800 -36.18653 -34.15216 -33.63980 -32.26363 -31.30789 -30.66504 -30.38526 -26.84570 -25.64382 -24.44007 -24.04076 -23.47090 -22.08561 -21.51307 -20.41154 -19.40332 -19.14118 -18.18166 -17.82657 -17.05689 -16.67699 -16.58221 -15.83231 -15.72423 -15.54434 -15.39026 -15.36511 -14.86430 -14.58782 -14.51084 -14.03867 -13.94001 -13.80411 -13.73703 -13.40123 -13.10884 -12.95293 -12.85668 -12.57240 -12.15759 -12.10231 -11.95811 -11.68225 -11.51694 -11.37382 -11.32242 -10.90890 -9.91293 -9.75321 -9.41497 -9.06845 -8.99811 -7.92944 -5.21863 -0.28900 0.02811 1.47626 1.48503 1.58613 1.65972 1.76377 1.93141 2.10141 2.56834 2.85740 2.96088 3.39830 3.54208 3.67735 3.85174 3.94684 4.00424 4.02450 4.17656 4.22093 4.36240 4.42721 4.48604 4.57543 4.63829 4.69986 4.80717 4.91379 4.95714 4.99331 5.00363 5.11018 5.20681 5.30055 5.42634 5.45585 5.50549 5.55416 5.69937 5.93065 6.28754 6.36359 6.59492 6.71386 7.08839 7.34521 8.09672 8.34183 9.30969 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.002948 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.069673 B = 9496.539630 C =10379.700936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.174 3.826 11 C -0.128 4.128 12 C 0.090 3.910 13 N -0.588 5.588 14 C 0.567 3.433 15 O -0.575 6.575 16 C 0.049 3.951 17 C -0.111 4.111 18 C -0.076 4.076 19 C 0.061 3.939 20 N -0.572 5.572 21 H 0.439 0.561 22 C 0.102 3.898 23 C -0.220 4.220 24 C 0.055 3.945 25 N -0.427 5.427 26 C 0.118 3.882 27 C -0.136 4.136 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.178 0.822 37 H 0.229 0.771 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -30.701 -7.178 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.167 4.167 12 C -0.033 4.033 13 N -0.318 5.318 14 C 0.355 3.645 15 O -0.456 6.456 16 C -0.096 4.096 17 C -0.134 4.134 18 C -0.104 4.104 19 C -0.051 4.051 20 N -0.177 5.177 21 H 0.281 0.719 22 C -0.026 4.026 23 C -0.244 4.244 24 C -0.081 4.081 25 N -0.139 5.139 26 C -0.005 4.005 27 C -0.177 4.177 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.195 0.805 37 H 0.245 0.755 38 H 0.182 0.818 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.235 -30.026 -7.041 30.842 hybrid contribution -0.489 0.669 0.816 1.163 sum -0.254 -29.358 -6.225 30.012 Atomic orbital electron populations 1.69834 1.06664 1.25870 1.59923 1.25568 0.96374 1.01092 1.04032 0.85079 0.78304 0.79880 0.76557 1.18924 1.21999 1.22310 1.19677 0.91459 0.85143 1.40441 0.90507 1.42672 1.05373 1.01022 1.88564 1.20432 0.94566 0.85038 0.93455 1.22120 0.98371 0.94981 1.01234 1.23001 1.00413 0.98545 0.81316 1.48084 1.52355 1.13809 1.17596 1.18273 0.78099 0.82383 0.85734 1.90710 1.55915 1.82219 1.16710 1.20739 1.03321 0.95689 0.89839 1.21776 0.97322 0.92136 1.02136 1.20756 0.99519 1.00578 0.89528 1.19350 1.00201 0.93869 0.91697 1.41723 1.51809 1.19572 1.04590 0.71921 1.22703 0.97506 0.91940 0.90484 1.21928 1.10102 1.00809 0.91582 1.20844 1.00426 0.90648 0.96173 1.66788 1.13844 1.27923 1.05351 1.21552 0.94202 0.86657 0.98094 1.22343 0.99416 0.96028 0.99891 0.94127 0.79804 0.93307 0.90550 0.93628 0.90896 0.83064 0.82917 0.80467 0.75479 0.81847 0.89940 0.89883 0.91864 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.24 -13.40 9.93 84.03 0.83 -12.57 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.74 -38.85 5.12 -322.81 -1.65 -40.51 16 10 C 0.17 7.28 2.73 45.02 0.12 7.41 16 11 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 12 C 0.09 2.78 5.87 86.36 0.51 3.29 16 13 N -0.59 -19.65 2.98 -822.91 -2.45 -22.10 16 14 C 0.57 19.30 7.65 86.85 0.66 19.96 16 15 O -0.58 -22.09 15.77 -3.82 -0.06 -22.15 16 16 C 0.05 1.40 6.57 42.03 0.28 1.67 16 17 C -0.11 -2.46 9.60 22.62 0.22 -2.25 16 18 C -0.08 -1.12 10.18 22.49 0.23 -0.90 16 19 C 0.06 0.94 7.29 39.25 0.29 1.23 16 20 N -0.57 -3.82 6.05 -187.40 -1.13 -4.96 16 21 H 0.44 -0.38 8.96 -92.70 -0.83 -1.21 16 22 C 0.10 0.61 11.81 83.03 0.98 1.59 16 23 C -0.22 -3.15 11.08 23.53 0.26 -2.88 16 24 C 0.05 1.17 7.52 41.93 0.32 1.49 16 25 N -0.43 -11.46 6.17 -174.25 -1.07 -12.53 16 26 C 0.12 3.97 6.42 86.22 0.55 4.53 16 27 C -0.14 -5.37 5.64 30.53 0.17 -5.20 16 28 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.37 21.10 7.80 -92.71 -0.72 20.38 16 30 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.15 4.56 4.04 -65.92 -0.27 4.30 16 35 H 0.15 3.23 7.65 -2.91 -0.02 3.20 16 36 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.23 -0.86 8.06 -2.91 -0.02 -0.88 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.08 2.84 7.00 -2.39 -0.02 2.82 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -79.20 346.03 1.25 -77.94 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.74 Total: 27.11 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.06 Total: 8.75 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -6.03 Total: -140.94 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -79.20 1.25 -77.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996797845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.670 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds