Wall clock time and date at job start Fri Apr 10 2020 22:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47300 * 299.99624 * 3 2 1 6 6 H 1.48499 * 109.47407 * 60.00014 * 3 2 1 7 7 C 1.38820 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.53357 * 109.41635 * 275.12936 * 10 9 7 12 12 C 1.53197 * 109.14600 * 178.67737 * 11 10 9 13 13 N 1.46922 * 108.89563 * 54.57299 * 12 11 10 14 14 C 1.34778 * 120.62596 * 126.34150 * 13 12 11 15 15 O 1.21601 * 120.00387 * 354.17560 * 14 13 12 16 16 C 1.47527 * 119.99811 * 174.17713 * 14 13 12 17 17 C 1.46505 * 120.16496 * 319.23334 * 16 14 13 18 18 C 1.35529 * 119.04689 * 180.02562 * 17 16 14 19 19 C 1.41228 * 119.42534 * 0.02562 * 18 17 16 20 20 C 1.37915 * 132.97065 * 179.97438 * 19 18 17 21 21 N 1.33449 * 107.65967 * 180.02562 * 20 19 18 22 22 C 1.30753 * 109.93674 * 359.97438 * 21 20 19 23 23 N 1.35920 * 109.20746 * 0.02562 * 22 21 20 24 24 C 1.36322 * 120.16600 * 138.96346 * 16 14 13 25 25 C 1.46919 * 118.74288 * 306.32546 * 13 12 11 26 26 C 1.53042 * 109.46008 * 155.00435 * 10 9 7 27 27 H 0.96998 * 120.00112 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99766 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.45655 * 35.02990 * 10 9 7 30 30 H 1.09001 * 109.68246 * 58.71324 * 11 10 9 31 31 H 1.08997 * 109.47246 * 298.51195 * 11 10 9 32 32 H 1.09006 * 109.58426 * 294.71849 * 12 11 10 33 33 H 1.08994 * 109.58431 * 174.43892 * 12 11 10 34 34 H 1.07999 * 120.47382 * 359.97438 * 17 16 14 35 35 H 1.08003 * 120.28892 * 180.02562 * 18 17 16 36 36 H 1.08001 * 126.16836 * 359.97438 * 20 19 18 37 37 H 1.07991 * 125.39455 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.74710 * 0.02562 * 24 16 14 39 39 H 1.09005 * 109.58971 * 173.39470 * 25 13 12 40 40 H 1.08999 * 109.58556 * 293.67461 * 25 13 12 41 41 H 1.08998 * 109.50192 * 61.43246 * 26 10 9 42 42 H 1.09002 * 109.52265 * 301.35363 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 2.4239 -4.0343 -1.4391 12 6 3.2180 -5.3444 -1.4291 13 7 2.4410 -6.3662 -0.7144 14 6 2.1726 -7.5537 -1.2926 15 8 2.4816 -7.7490 -2.4524 16 6 1.5040 -8.6167 -0.5184 17 6 1.8766 -8.8557 0.8781 18 6 1.2481 -9.8385 1.5679 19 6 0.2519 -10.6078 0.9274 20 6 -0.5467 -11.6503 1.3488 21 7 -1.3206 -12.0080 0.3221 22 6 -1.0595 -11.2570 -0.7159 23 7 -0.0851 -10.3671 -0.3902 24 6 0.5324 -9.3778 -1.0973 25 6 1.9625 -6.0692 0.6425 26 6 1.1809 -4.7520 0.6125 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.9689 -3.5502 0.5908 30 1 3.0303 -3.2447 -1.8828 31 1 1.5128 -4.1656 -2.0228 32 1 4.1711 -5.1900 -0.9232 33 1 3.3967 -5.6711 -2.4534 34 1 2.6418 -8.2579 1.3508 35 1 1.5067 -10.0317 2.5986 36 1 -0.5453 -12.0972 2.3320 37 1 -1.5418 -11.3319 -1.6792 38 1 0.2539 -9.2001 -2.1255 39 1 1.3106 -6.8732 0.9843 40 1 2.8131 -5.9765 1.3178 41 1 0.2814 -4.8764 0.0095 42 1 0.9020 -4.4711 1.6281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996798977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:26 Heat of formation + Delta-G solvation = 74.519066 kcal Electronic energy + Delta-G solvation = -25505.468939 eV Core-core repulsion = 21873.270405 eV Total energy + Delta-G solvation = -3632.198534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.03371 -40.36608 -37.70676 -37.05631 -34.67602 -33.75967 -32.23290 -31.56356 -30.56101 -29.29449 -28.49159 -25.49799 -24.53172 -23.38768 -22.82901 -22.51842 -22.10005 -20.55316 -19.25095 -18.41906 -17.55408 -17.16241 -16.51976 -16.30114 -16.09692 -15.36501 -15.00091 -14.90855 -14.88230 -14.28055 -13.92293 -13.78268 -13.65159 -13.49043 -13.24464 -13.02244 -12.52078 -12.34000 -12.12776 -11.84517 -11.60109 -11.10325 -10.98755 -10.96614 -10.86136 -10.63613 -10.51211 -10.31669 -10.15882 -9.88973 -9.75013 -9.52176 -8.97107 -8.67140 -7.90663 -7.04280 -5.83636 -3.13130 0.36176 0.68522 2.09869 2.40903 2.77939 2.90238 3.13927 3.38439 3.44199 3.46453 4.04317 4.12832 4.26334 4.38664 4.47377 4.52347 4.60335 4.88785 5.03083 5.13266 5.13774 5.28135 5.34637 5.42206 5.45526 5.53609 5.55901 5.68809 5.74296 5.79189 5.87724 6.09252 6.10867 6.17482 6.22229 6.35085 6.45403 6.47859 6.74985 6.81524 6.95952 7.28544 7.50815 7.63523 7.95817 8.34446 9.45953 10.02513 10.36890 11.38912 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002715 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.231429 B =10308.934403 C =10709.308961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.112 3.888 13 N -0.594 5.594 14 C 0.569 3.431 15 O -0.540 6.540 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.078 4.078 19 C 0.004 3.996 20 C -0.019 4.019 21 N -0.454 5.454 22 C 0.153 3.847 23 N -0.376 5.376 24 C 0.117 3.883 25 C 0.103 3.897 26 C -0.140 4.140 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.182 0.818 37 H 0.215 0.785 38 H 0.175 0.825 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -21.534 2.692 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.191 4.191 12 C -0.010 4.010 13 N -0.325 5.325 14 C 0.356 3.644 15 O -0.418 6.418 16 C -0.149 4.149 17 C -0.122 4.122 18 C -0.097 4.097 19 C -0.104 4.104 20 C -0.171 4.171 21 N -0.167 5.167 22 C -0.122 4.122 23 N -0.049 5.049 24 C -0.005 4.005 25 C -0.020 4.020 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.199 0.801 37 H 0.231 0.769 38 H 0.192 0.808 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.294 -22.111 1.992 22.319 hybrid contribution 0.630 1.727 -0.093 1.841 sum 2.924 -20.384 1.899 20.680 Atomic orbital electron populations 1.69666 1.05146 1.25637 1.57544 1.24757 0.95509 0.97758 1.02874 0.86135 0.78793 0.84134 0.77220 1.20526 1.21856 1.21850 1.19269 0.91004 0.84034 1.42848 0.91080 1.42433 1.05797 0.99712 1.88502 1.20230 0.94364 0.86023 0.92529 1.22736 1.00189 0.94717 1.01492 1.21788 0.93761 0.87706 0.97751 1.48029 1.53302 1.14151 1.17062 1.17731 0.79013 0.81766 0.85920 1.90814 1.53782 1.80893 1.16327 1.20439 0.99731 0.99354 0.95377 1.22193 1.00479 0.97961 0.91574 1.20434 0.94383 0.94337 1.00578 1.19768 1.03000 1.02552 0.85075 1.22596 0.97113 0.97917 0.99507 1.69971 1.23282 1.24109 0.99313 1.25229 0.94325 0.91261 1.01423 1.42961 1.27179 1.23649 1.11064 1.21576 0.93601 0.87695 0.97674 1.22122 0.98846 0.98557 0.82493 1.22217 0.99221 0.94002 1.02446 0.93504 0.78281 0.93313 0.90482 0.92215 0.91390 0.89461 0.83503 0.82972 0.80089 0.76899 0.80774 0.89468 0.90869 0.91765 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.16 5.12 -53.23 -0.27 -17.43 16 10 C 0.18 3.21 2.73 -67.73 -0.19 3.03 16 11 C -0.15 -2.50 5.69 -26.44 -0.15 -2.65 16 12 C 0.11 1.54 6.43 -3.71 -0.02 1.51 16 13 N -0.59 -7.51 2.97 -174.00 -0.52 -8.03 16 14 C 0.57 7.50 7.32 -12.47 -0.09 7.41 16 15 O -0.54 -8.78 16.33 5.28 0.09 -8.69 16 16 C -0.14 -1.52 5.15 -103.47 -0.53 -2.05 16 17 C -0.10 -0.86 7.62 -37.22 -0.28 -1.14 16 18 C -0.08 -0.61 10.09 -39.41 -0.40 -1.00 16 19 C 0.00 0.04 6.78 -84.01 -0.57 -0.53 16 20 C -0.02 -0.18 12.00 -16.97 -0.20 -0.38 16 21 N -0.45 -5.07 11.19 -13.78 -0.15 -5.23 16 22 C 0.15 1.44 12.76 -89.36 -1.14 0.30 16 23 N -0.38 -3.77 2.94 -61.93 -0.18 -3.95 16 24 C 0.12 1.17 10.52 -16.22 -0.17 1.00 16 25 C 0.10 1.13 4.94 -3.71 -0.02 1.11 16 26 C -0.14 -2.02 5.55 -26.61 -0.15 -2.17 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 29 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 34 H 0.15 0.99 6.77 -52.49 -0.36 0.63 16 35 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.18 1.49 8.03 -52.49 -0.42 1.07 16 39 H 0.09 0.83 4.75 -51.93 -0.25 0.58 16 40 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -33.38 347.04 -9.74 -43.12 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.47 Total: 7.52 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -4.16 Total: -2.56 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.40 Total: -61.42 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.38 -9.74 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996798977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.644 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds