Wall clock time and date at job start Fri Apr 10 2020 22:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47300 * 299.99624 * 3 2 1 6 6 H 1.48499 * 109.47407 * 60.00014 * 3 2 1 7 7 C 1.38820 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.53357 * 109.41635 * 275.12936 * 10 9 7 12 12 C 1.53197 * 109.14600 * 178.67737 * 11 10 9 13 13 N 1.46922 * 108.89563 * 54.57299 * 12 11 10 14 14 C 1.34778 * 120.62596 * 126.34150 * 13 12 11 15 15 O 1.21601 * 120.00387 * 354.17560 * 14 13 12 16 16 C 1.47527 * 119.99811 * 174.17713 * 14 13 12 17 17 C 1.46505 * 120.16496 * 319.23334 * 16 14 13 18 18 C 1.35529 * 119.04689 * 180.02562 * 17 16 14 19 19 C 1.41228 * 119.42534 * 0.02562 * 18 17 16 20 20 C 1.37915 * 132.97065 * 179.97438 * 19 18 17 21 21 N 1.33449 * 107.65967 * 180.02562 * 20 19 18 22 22 C 1.30753 * 109.93674 * 359.97438 * 21 20 19 23 23 N 1.35920 * 109.20746 * 0.02562 * 22 21 20 24 24 C 1.36322 * 120.16600 * 138.96346 * 16 14 13 25 25 C 1.46919 * 118.74288 * 306.32546 * 13 12 11 26 26 C 1.53042 * 109.46008 * 155.00435 * 10 9 7 27 27 H 0.96998 * 120.00112 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99766 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.45655 * 35.02990 * 10 9 7 30 30 H 1.09001 * 109.68246 * 58.71324 * 11 10 9 31 31 H 1.08997 * 109.47246 * 298.51195 * 11 10 9 32 32 H 1.09006 * 109.58426 * 294.71849 * 12 11 10 33 33 H 1.08994 * 109.58431 * 174.43892 * 12 11 10 34 34 H 1.07999 * 120.47382 * 359.97438 * 17 16 14 35 35 H 1.08003 * 120.28892 * 180.02562 * 18 17 16 36 36 H 1.08001 * 126.16836 * 359.97438 * 20 19 18 37 37 H 1.07991 * 125.39455 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.74710 * 0.02562 * 24 16 14 39 39 H 1.09005 * 109.58971 * 173.39470 * 25 13 12 40 40 H 1.08999 * 109.58556 * 293.67461 * 25 13 12 41 41 H 1.08998 * 109.50192 * 61.43246 * 26 10 9 42 42 H 1.09002 * 109.52265 * 301.35363 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 2.4239 -4.0343 -1.4391 12 6 3.2180 -5.3444 -1.4291 13 7 2.4410 -6.3662 -0.7144 14 6 2.1726 -7.5537 -1.2926 15 8 2.4816 -7.7490 -2.4524 16 6 1.5040 -8.6167 -0.5184 17 6 1.8766 -8.8557 0.8781 18 6 1.2481 -9.8385 1.5679 19 6 0.2519 -10.6078 0.9274 20 6 -0.5467 -11.6503 1.3488 21 7 -1.3206 -12.0080 0.3221 22 6 -1.0595 -11.2570 -0.7159 23 7 -0.0851 -10.3671 -0.3902 24 6 0.5324 -9.3778 -1.0973 25 6 1.9625 -6.0692 0.6425 26 6 1.1809 -4.7520 0.6125 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.9689 -3.5502 0.5908 30 1 3.0303 -3.2447 -1.8828 31 1 1.5128 -4.1656 -2.0228 32 1 4.1711 -5.1900 -0.9232 33 1 3.3967 -5.6711 -2.4534 34 1 2.6418 -8.2579 1.3508 35 1 1.5067 -10.0317 2.5986 36 1 -0.5453 -12.0972 2.3320 37 1 -1.5418 -11.3319 -1.6792 38 1 0.2539 -9.2001 -2.1255 39 1 1.3106 -6.8732 0.9843 40 1 2.8131 -5.9765 1.3178 41 1 0.2814 -4.8764 0.0095 42 1 0.9020 -4.4711 1.6281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996798977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:26 Heat of formation + Delta-G solvation = 54.938400 kcal Electronic energy + Delta-G solvation = -25506.318020 eV Core-core repulsion = 21873.270405 eV Total energy + Delta-G solvation = -3633.047615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73493 -41.40263 -38.89044 -37.89675 -36.22029 -34.52350 -33.81352 -32.61252 -31.62138 -30.88600 -29.18028 -26.83922 -25.70926 -24.51221 -23.91384 -23.62569 -22.82499 -21.77369 -20.37671 -19.29544 -19.03095 -18.30556 -17.50057 -17.16689 -16.87116 -16.69859 -16.27688 -15.82331 -15.61283 -15.49385 -15.39390 -15.21407 -14.79095 -14.45080 -14.42209 -13.91347 -13.86504 -13.43273 -13.13338 -12.88313 -12.87219 -12.75135 -12.54412 -12.19684 -12.12420 -11.96471 -11.75026 -11.68424 -11.47045 -11.34107 -11.06664 -10.90018 -10.32664 -9.75489 -9.00767 -8.57807 -7.93875 -5.22108 -0.38069 0.02379 1.30920 1.47958 1.48584 1.55432 1.58069 1.94963 2.06500 2.38622 2.56617 3.25796 3.39949 3.40070 3.66694 3.71358 3.79681 3.86097 3.88742 3.92884 4.09471 4.16133 4.33059 4.39657 4.45072 4.53463 4.59579 4.76944 4.79990 4.82794 4.84822 4.90897 4.96977 5.10685 5.13209 5.29109 5.46006 5.48540 5.54016 5.56663 5.59070 6.05248 6.27072 6.28911 6.80498 6.93904 7.34616 8.11014 8.32698 9.29899 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002715 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.231429 B =10308.934403 C =10709.308961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.593 5.593 14 C 0.571 3.429 15 O -0.577 6.577 16 C -0.152 4.152 17 C -0.108 4.108 18 C -0.067 4.067 19 C -0.013 4.013 20 C -0.027 4.027 21 N -0.484 5.484 22 C 0.148 3.852 23 N -0.382 5.382 24 C 0.113 3.887 25 C 0.110 3.890 26 C -0.132 4.132 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.204 0.796 37 H 0.241 0.759 38 H 0.181 0.819 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -22.941 4.244 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.324 5.324 14 C 0.359 3.641 15 O -0.458 6.458 16 C -0.158 4.158 17 C -0.128 4.128 18 C -0.086 4.086 19 C -0.120 4.120 20 C -0.179 4.179 21 N -0.198 5.198 22 C -0.127 4.127 23 N -0.055 5.055 24 C -0.009 4.009 25 C -0.012 4.012 26 C -0.171 4.171 27 H 0.058 0.942 28 H 0.202 0.798 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.187 0.813 35 H 0.204 0.796 36 H 0.221 0.779 37 H 0.257 0.743 38 H 0.198 0.802 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.819 -23.561 3.568 24.134 hybrid contribution 0.147 2.047 -0.602 2.139 sum 3.966 -21.514 2.966 22.077 Atomic orbital electron populations 1.69818 1.06645 1.25813 1.59988 1.25531 0.96296 1.01037 1.04183 0.85138 0.78446 0.80177 0.76418 1.18776 1.22609 1.22216 1.19663 0.91491 0.85099 1.40190 0.90304 1.42684 1.05422 1.01123 1.88497 1.20512 0.94748 0.84899 0.93391 1.22517 0.99369 0.96132 1.00006 1.21613 0.94173 0.86182 0.98145 1.48058 1.52994 1.13785 1.17593 1.18058 0.78340 0.82187 0.85501 1.90796 1.55300 1.81623 1.18066 1.20331 1.00112 0.98910 0.96496 1.22372 1.01277 0.98815 0.90367 1.20830 0.92865 0.93031 1.01860 1.20206 1.03683 1.03006 0.85155 1.23076 0.96703 0.97945 1.00199 1.69985 1.24366 1.25162 1.00276 1.25843 0.94005 0.90644 1.02170 1.43065 1.27340 1.23670 1.11391 1.21673 0.93626 0.87617 0.98024 1.22234 0.99928 0.96999 0.81999 1.22103 0.98434 0.94654 1.01874 0.94210 0.79828 0.92623 0.92128 0.94419 0.89056 0.90218 0.81316 0.79579 0.77884 0.74322 0.80237 0.87235 0.87880 0.93300 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 45.14 29.55 68.60 2.03 47.16 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.23 -12.31 9.93 84.04 0.83 -11.48 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.20 5.12 -322.31 -1.65 -36.85 16 10 C 0.17 6.04 2.73 45.13 0.12 6.17 16 11 C -0.14 -4.61 5.69 30.78 0.18 -4.44 16 12 C 0.12 3.15 6.43 86.36 0.56 3.71 16 13 N -0.59 -13.77 2.97 -822.67 -2.45 -16.22 16 14 C 0.57 14.21 7.32 86.69 0.63 14.85 16 15 O -0.58 -18.51 16.33 -4.03 -0.07 -18.58 16 16 C -0.15 -2.94 5.15 -19.12 -0.10 -3.04 16 17 C -0.11 -1.45 7.62 23.80 0.18 -1.27 16 18 C -0.07 -0.80 10.09 22.38 0.23 -0.58 16 19 C -0.01 -0.22 6.78 38.81 0.26 0.04 16 20 C -0.03 -0.48 12.00 84.37 1.01 0.53 16 21 N -0.48 -10.24 11.19 -197.51 -2.21 -12.45 16 22 C 0.15 2.62 12.76 179.91 2.30 4.92 16 23 N -0.38 -7.07 2.94 -349.86 -1.03 -8.10 16 24 C 0.11 2.12 10.52 83.54 0.88 3.00 16 25 C 0.11 2.07 4.94 86.36 0.43 2.49 16 26 C -0.13 -3.60 5.55 30.67 0.17 -3.43 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.37 19.37 7.80 -92.71 -0.72 18.65 16 29 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.08 2.24 6.99 -2.39 -0.02 2.22 16 34 H 0.17 1.48 6.77 -2.91 -0.02 1.46 16 35 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.24 2.45 8.06 -2.92 -0.02 2.42 16 38 H 0.18 2.99 8.03 -2.91 -0.02 2.96 16 39 H 0.11 1.66 4.75 -2.38 -0.01 1.65 16 40 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.59 347.04 3.38 -70.21 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.33 Total: 25.59 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 8.14 Total: 7.55 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -7.05 Total: -131.94 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.07 Total: -18.58 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.59 3.38 -70.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996798977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.149 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds