Wall clock time and date at job start Fri Apr 10 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48495 * 109.47099 * 269.99745 * 3 2 1 5 5 H 1.48500 * 109.47403 * 30.00161 * 3 2 1 6 6 H 1.48503 * 109.46888 * 150.00107 * 3 2 1 7 7 C 1.38813 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.36928 * 119.99943 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99840 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45929 * 155.00306 * 10 9 7 12 12 C 1.53187 * 109.31307 * 181.37540 * 11 10 9 13 13 N 1.46929 * 108.77673 * 305.36171 * 12 11 10 14 14 C 1.34779 * 120.63255 * 233.58860 * 13 12 11 15 15 O 1.21598 * 119.99983 * 355.81167 * 14 13 12 16 16 C 1.47465 * 119.99791 * 176.09427 * 14 13 12 17 17 C 1.38997 * 120.29824 * 54.07216 * 16 14 13 18 18 C 1.38501 * 120.36907 * 179.76491 * 17 16 14 19 19 C 1.37836 * 120.79122 * 0.52162 * 18 17 16 20 20 C 1.39219 * 120.19179 * 359.73851 * 19 18 17 21 21 N 1.37212 * 133.64807 * 180.02562 * 20 19 18 22 22 H 0.97005 * 125.97940 * 359.97438 * 21 20 19 23 23 N 1.40024 * 108.04015 * 180.02562 * 21 20 19 24 24 C 1.30270 * 109.69998 * 359.97438 * 23 21 20 25 25 C 1.40681 * 119.78995 * 0.02562 * 20 19 18 26 26 C 1.46923 * 118.73311 * 53.86256 * 13 12 11 27 27 C 1.53038 * 109.45248 * 275.06186 * 10 9 7 28 28 H 0.96996 * 120.00167 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00448 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.45889 * 35.02912 * 10 9 7 31 31 H 1.09000 * 109.49635 * 61.41995 * 11 10 9 32 32 H 1.09003 * 109.52088 * 301.33907 * 11 10 9 33 33 H 1.09005 * 109.58598 * 185.57839 * 12 11 10 34 34 H 1.08996 * 109.70667 * 65.22139 * 12 11 10 35 35 H 1.07996 * 119.81793 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.61065 * 180.23473 * 18 17 16 37 37 H 1.07994 * 119.90651 * 179.76022 * 19 18 17 38 38 H 1.07998 * 125.64415 * 179.97438 * 24 23 21 39 39 H 1.08998 * 109.59048 * 65.92713 * 26 13 12 40 40 H 1.09004 * 109.58508 * 186.35775 * 26 13 12 41 41 H 1.08993 * 109.49868 * 298.57578 * 27 10 9 42 42 H 1.09001 * 109.49226 * 58.67277 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.4994 -2.2593 -0.6094 12 6 6.2494 -3.5946 -0.6381 13 7 6.2670 -4.1564 0.7195 14 6 7.4294 -4.5172 1.2984 15 8 8.4681 -4.4504 0.6698 16 6 7.4406 -4.9987 2.6922 17 6 6.6213 -6.0538 3.0762 18 6 6.6343 -6.5105 4.3837 19 6 7.4484 -5.9231 5.3282 20 6 8.2764 -4.8609 4.9756 21 7 9.1750 -4.0899 5.6691 22 1 9.3930 -4.1763 6.6103 23 7 9.7212 -3.1556 4.7805 24 6 9.2041 -3.3213 3.5964 25 6 8.2799 -4.3872 3.6510 26 6 4.9926 -4.3231 1.4314 27 6 4.2572 -2.9744 1.4390 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.5646 -3.2068 -0.5877 31 1 6.0565 -1.5419 -0.0068 32 1 5.3959 -1.8783 -1.6254 33 1 7.2718 -3.4323 -0.9795 34 1 5.7442 -4.2855 -1.3129 35 1 5.9741 -6.5230 2.3500 36 1 5.9954 -7.3336 4.6678 37 1 7.4443 -6.2881 6.3446 38 1 9.4424 -2.7391 2.7185 39 1 4.3847 -5.0710 0.9224 40 1 5.1854 -4.6414 2.4560 41 1 4.8259 -2.2503 2.0223 42 1 3.2691 -3.1026 1.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996863820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:31 Heat of formation + Delta-G solvation = 76.123011 kcal Electronic energy + Delta-G solvation = -25916.258866 eV Core-core repulsion = 22284.129885 eV Total energy + Delta-G solvation = -3632.128981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82853 -40.08834 -37.57891 -37.13123 -34.65102 -32.98924 -32.05251 -31.06579 -30.27993 -29.94484 -29.43922 -25.52371 -23.93271 -23.19513 -22.79041 -22.21499 -21.76106 -20.54534 -19.49215 -18.03133 -17.45853 -17.38519 -16.53382 -15.81347 -15.58297 -15.28085 -15.04410 -14.85262 -14.59926 -14.14335 -14.00895 -13.80140 -13.52708 -13.27687 -12.94552 -12.59813 -12.27391 -12.24374 -12.01477 -11.95906 -11.76519 -11.22540 -11.08372 -11.02192 -10.91630 -10.63410 -10.57735 -10.27610 -9.92394 -9.84635 -9.61825 -8.99914 -8.95016 -8.61892 -8.30778 -7.31073 -5.80610 -3.16389 0.33492 1.09742 2.23491 2.38813 2.58285 2.94281 3.35778 3.39132 3.43832 3.46114 4.15391 4.38351 4.52121 4.56427 4.62609 4.68986 4.91550 5.03002 5.07479 5.17915 5.29286 5.35047 5.38933 5.45849 5.52086 5.56945 5.61331 5.81482 5.90605 5.91785 6.03116 6.05566 6.08633 6.13480 6.25485 6.35390 6.39110 6.50976 6.76984 6.91644 6.94589 7.25838 7.37178 7.94920 8.06915 8.38583 9.16816 9.89738 10.09420 11.37617 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003418 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.233331 B = 8188.925940 C = 8374.683634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.117 3.883 13 N -0.596 5.596 14 C 0.558 3.442 15 O -0.538 6.538 16 C -0.039 4.039 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.125 3.875 21 N -0.508 5.508 22 H 0.442 0.558 23 N -0.248 5.248 24 C 0.086 3.914 25 C -0.140 4.140 26 C 0.096 3.904 27 C -0.150 4.150 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.194 0.806 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.044 -14.226 9.520 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.006 4.006 13 N -0.328 5.328 14 C 0.346 3.654 15 O -0.416 6.416 16 C -0.045 4.045 17 C -0.146 4.146 18 C -0.091 4.091 19 C -0.149 4.149 20 C 0.008 3.992 21 N -0.223 5.223 22 H 0.287 0.713 23 N -0.063 5.063 24 C -0.110 4.110 25 C -0.148 4.148 26 C -0.026 4.026 27 C -0.191 4.191 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.211 0.789 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.171 -13.509 9.873 23.975 hybrid contribution -0.067 0.810 0.203 0.838 sum 17.104 -12.699 10.076 23.566 Atomic orbital electron populations 1.69698 1.05109 1.25865 1.57444 1.24665 0.95204 0.97198 1.01954 0.86571 0.79214 0.85040 0.77816 1.21044 1.21775 1.20372 1.19062 0.80542 0.94682 1.43134 0.89149 1.42803 1.04020 1.01994 1.90209 1.20155 0.90194 0.89421 0.92894 1.22254 0.97239 0.96420 1.02286 1.21640 1.02139 0.94761 0.82012 1.48127 1.06502 1.61400 1.16818 1.18213 0.83612 0.77697 0.85915 1.90792 1.31845 1.54631 1.64330 1.19362 0.95928 0.96638 0.92548 1.21141 0.99194 0.97241 0.97007 1.20917 0.97220 0.98794 0.92184 1.20194 0.98005 0.96071 1.00657 1.18791 0.93824 0.94795 0.91811 1.46090 1.36194 1.28507 1.11498 0.71294 1.76787 1.18979 1.10174 1.00333 1.23957 0.94430 0.96530 0.96078 1.18612 1.02525 1.00628 0.93033 1.22252 0.83668 0.99273 0.97455 1.22709 1.00495 0.94731 1.01197 0.93043 0.80648 0.92433 0.91897 0.90320 0.89151 0.91072 0.84554 0.84365 0.85190 0.78899 0.90928 0.89427 0.92302 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.92 4.92 -53.39 -0.26 -17.18 16 10 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 11 C -0.14 -2.12 5.55 -26.61 -0.15 -2.27 16 12 C 0.12 1.51 6.42 -3.71 -0.02 1.49 16 13 N -0.60 -7.74 2.97 -173.76 -0.52 -8.26 16 14 C 0.56 7.76 7.06 -12.50 -0.09 7.67 16 15 O -0.54 -8.92 16.52 5.28 0.09 -8.84 16 16 C -0.04 -0.47 4.92 -104.68 -0.51 -0.98 16 17 C -0.13 -1.17 7.40 -39.20 -0.29 -1.46 16 18 C -0.07 -0.52 10.00 -39.63 -0.40 -0.92 16 19 C -0.13 -1.01 10.06 -39.36 -0.40 -1.40 16 20 C 0.12 1.31 7.32 -84.17 -0.62 0.69 16 21 N -0.51 -5.00 7.45 32.35 0.24 -4.76 16 22 H 0.44 2.81 8.96 -182.65 -1.64 1.18 16 23 N -0.25 -3.06 12.58 30.81 0.39 -2.67 16 24 C 0.09 1.08 11.84 -17.10 -0.20 0.88 16 25 C -0.14 -1.74 6.00 -106.68 -0.64 -2.38 16 26 C 0.10 1.16 5.54 -3.49 -0.02 1.14 16 27 C -0.15 -2.36 5.67 -26.39 -0.15 -2.51 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.36 8.17 5.66 -40.82 -0.23 7.94 16 30 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.19 7.03 -51.93 -0.36 0.83 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.14 1.05 7.34 -52.49 -0.39 0.67 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.94 4.73 -51.93 -0.25 0.70 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -34.13 344.48 -9.41 -43.55 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.68 Total: 7.55 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.92 Total: -3.72 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.63 Total: -60.85 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.13 -9.41 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996863820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.669 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds