Wall clock time and date at job start Fri Apr 10 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48495 * 109.47099 * 269.99745 * 3 2 1 5 5 H 1.48500 * 109.47403 * 30.00161 * 3 2 1 6 6 H 1.48503 * 109.46888 * 150.00107 * 3 2 1 7 7 C 1.38813 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.36928 * 119.99943 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99840 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45929 * 155.00306 * 10 9 7 12 12 C 1.53187 * 109.31307 * 181.37540 * 11 10 9 13 13 N 1.46929 * 108.77673 * 305.36171 * 12 11 10 14 14 C 1.34779 * 120.63255 * 233.58860 * 13 12 11 15 15 O 1.21598 * 119.99983 * 355.81167 * 14 13 12 16 16 C 1.47465 * 119.99791 * 176.09427 * 14 13 12 17 17 C 1.38997 * 120.29824 * 54.07216 * 16 14 13 18 18 C 1.38501 * 120.36907 * 179.76491 * 17 16 14 19 19 C 1.37836 * 120.79122 * 0.52162 * 18 17 16 20 20 C 1.39219 * 120.19179 * 359.73851 * 19 18 17 21 21 N 1.37212 * 133.64807 * 180.02562 * 20 19 18 22 22 H 0.97005 * 125.97940 * 359.97438 * 21 20 19 23 23 N 1.40024 * 108.04015 * 180.02562 * 21 20 19 24 24 C 1.30270 * 109.69998 * 359.97438 * 23 21 20 25 25 C 1.40681 * 119.78995 * 0.02562 * 20 19 18 26 26 C 1.46923 * 118.73311 * 53.86256 * 13 12 11 27 27 C 1.53038 * 109.45248 * 275.06186 * 10 9 7 28 28 H 0.96996 * 120.00167 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00448 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.45889 * 35.02912 * 10 9 7 31 31 H 1.09000 * 109.49635 * 61.41995 * 11 10 9 32 32 H 1.09003 * 109.52088 * 301.33907 * 11 10 9 33 33 H 1.09005 * 109.58598 * 185.57839 * 12 11 10 34 34 H 1.08996 * 109.70667 * 65.22139 * 12 11 10 35 35 H 1.07996 * 119.81793 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.61065 * 180.23473 * 18 17 16 37 37 H 1.07994 * 119.90651 * 179.76022 * 19 18 17 38 38 H 1.07998 * 125.64415 * 179.97438 * 24 23 21 39 39 H 1.08998 * 109.59048 * 65.92713 * 26 13 12 40 40 H 1.09004 * 109.58508 * 186.35775 * 26 13 12 41 41 H 1.08993 * 109.49868 * 298.57578 * 27 10 9 42 42 H 1.09001 * 109.49226 * 58.67277 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.4994 -2.2593 -0.6094 12 6 6.2494 -3.5946 -0.6381 13 7 6.2670 -4.1564 0.7195 14 6 7.4294 -4.5172 1.2984 15 8 8.4681 -4.4504 0.6698 16 6 7.4406 -4.9987 2.6922 17 6 6.6213 -6.0538 3.0762 18 6 6.6343 -6.5105 4.3837 19 6 7.4484 -5.9231 5.3282 20 6 8.2764 -4.8609 4.9756 21 7 9.1750 -4.0899 5.6691 22 1 9.3930 -4.1763 6.6103 23 7 9.7212 -3.1556 4.7805 24 6 9.2041 -3.3213 3.5964 25 6 8.2799 -4.3872 3.6510 26 6 4.9926 -4.3231 1.4314 27 6 4.2572 -2.9744 1.4390 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.5646 -3.2068 -0.5877 31 1 6.0565 -1.5419 -0.0068 32 1 5.3959 -1.8783 -1.6254 33 1 7.2718 -3.4323 -0.9795 34 1 5.7442 -4.2855 -1.3129 35 1 5.9741 -6.5230 2.3500 36 1 5.9954 -7.3336 4.6678 37 1 7.4443 -6.2881 6.3446 38 1 9.4424 -2.7391 2.7185 39 1 4.3847 -5.0710 0.9224 40 1 5.1854 -4.6414 2.4560 41 1 4.8259 -2.2503 2.0223 42 1 3.2691 -3.1026 1.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996863820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:31 Heat of formation + Delta-G solvation = 52.643126 kcal Electronic energy + Delta-G solvation = -25917.277030 eV Core-core repulsion = 22284.129885 eV Total energy + Delta-G solvation = -3633.147146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62498 -41.13962 -38.81176 -37.94450 -36.22986 -34.06673 -33.59955 -32.22370 -31.52567 -30.97208 -30.40716 -26.85681 -25.12203 -24.38561 -23.72665 -23.41570 -22.69312 -21.79663 -20.65875 -19.55801 -18.80993 -18.17290 -17.49531 -16.73722 -16.71078 -16.50490 -16.00650 -15.90699 -15.79911 -15.54533 -15.09400 -14.99265 -14.69698 -14.63714 -14.30964 -14.05990 -13.57281 -13.29386 -12.98158 -12.91480 -12.79667 -12.69853 -12.52298 -12.16381 -12.12774 -12.07152 -11.95448 -11.76673 -11.44437 -11.31330 -11.01520 -10.82083 -9.78061 -9.67493 -9.30271 -9.04135 -8.00199 -5.32512 -0.42925 0.38492 1.34626 1.38881 1.40135 1.47248 1.57628 1.72709 1.97111 2.49470 2.70202 3.28327 3.32429 3.54947 3.60773 3.76728 3.87062 3.94130 4.04420 4.08292 4.17321 4.31120 4.34197 4.41226 4.55329 4.61008 4.70418 4.77292 4.82871 4.85551 4.86639 5.02168 5.07001 5.23304 5.26837 5.30619 5.38066 5.47949 5.60468 5.73627 5.80784 6.24374 6.27282 6.33275 6.49369 7.03468 7.10251 7.87436 8.05033 9.21222 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003418 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.233331 B = 8188.925940 C = 8374.683634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.258 1.258 7 C -0.222 4.222 8 H 0.065 0.935 9 N -0.754 5.754 10 C 0.175 3.825 11 C -0.132 4.132 12 C 0.121 3.879 13 N -0.596 5.596 14 C 0.560 3.440 15 O -0.573 6.573 16 C -0.068 4.068 17 C -0.118 4.118 18 C -0.064 4.064 19 C -0.116 4.116 20 C 0.115 3.885 21 N -0.497 5.497 22 H 0.456 0.544 23 N -0.268 5.268 24 C 0.066 3.934 25 C -0.166 4.166 26 C 0.107 3.893 27 C -0.142 4.142 28 H 0.256 0.744 29 H 0.362 0.638 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.189 0.811 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.931 -16.171 10.878 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.183 1.183 7 C -0.353 4.353 8 H 0.082 0.918 9 N -0.396 5.396 10 C 0.068 3.932 11 C -0.171 4.171 12 C -0.001 4.001 13 N -0.327 5.327 14 C 0.349 3.651 15 O -0.453 6.453 16 C -0.074 4.074 17 C -0.138 4.138 18 C -0.085 4.085 19 C -0.138 4.138 20 C -0.002 4.002 21 N -0.215 5.215 22 H 0.304 0.696 23 N -0.084 5.084 24 C -0.129 4.129 25 C -0.175 4.175 26 C -0.015 4.015 27 C -0.183 4.183 28 H 0.065 0.935 29 H 0.194 0.806 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.173 0.827 36 H 0.196 0.804 37 H 0.183 0.817 38 H 0.206 0.794 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.109 -15.490 11.248 26.352 hybrid contribution -0.347 1.258 -0.163 1.316 sum 17.763 -14.232 11.085 25.317 Atomic orbital electron populations 1.69863 1.06950 1.26440 1.60180 1.25396 0.95964 1.00824 1.03179 0.85515 0.78484 0.80429 0.77953 1.20573 1.22602 1.18321 1.19054 0.82460 0.93483 1.40298 0.91752 1.42879 1.02571 1.03966 1.90206 1.20428 0.91133 0.87329 0.94356 1.22124 0.95367 0.97552 1.02068 1.21602 1.01886 0.94058 0.82601 1.48162 1.06685 1.61108 1.16754 1.18541 0.83050 0.76975 0.86557 1.90764 1.32981 1.56219 1.65355 1.19311 0.98084 0.98633 0.91416 1.21489 0.98059 0.95793 0.98414 1.21396 0.96928 0.99140 0.90996 1.20695 0.96247 0.94361 1.02507 1.19118 0.94410 0.95593 0.91114 1.46083 1.35724 1.27778 1.11932 0.69636 1.76692 1.19703 1.11305 1.00683 1.23995 0.95345 0.97359 0.96224 1.18821 1.03127 1.01164 0.94371 1.22243 0.83016 0.97322 0.98965 1.22509 1.00014 0.96655 0.99075 0.93497 0.80551 0.92659 0.92591 0.89881 0.89343 0.89209 0.82741 0.80422 0.81718 0.79385 0.88710 0.87575 0.93526 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.01 13.97 21.65 0.30 -61.70 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.95 45.36 27.74 68.60 1.90 47.26 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 7 C -0.22 -12.13 10.41 84.04 0.87 -11.25 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 9 N -0.75 -33.65 4.92 -322.82 -1.59 -35.24 16 10 C 0.18 6.02 2.73 45.02 0.12 6.14 16 11 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 12 C 0.12 2.94 6.42 86.36 0.55 3.50 16 13 N -0.60 -14.48 2.97 -821.90 -2.44 -16.92 16 14 C 0.56 15.05 7.06 86.67 0.61 15.67 16 15 O -0.57 -19.05 16.52 -4.02 -0.07 -19.11 16 16 C -0.07 -1.55 4.92 -19.90 -0.10 -1.65 16 17 C -0.12 -1.78 7.40 22.51 0.17 -1.62 16 18 C -0.06 -0.65 10.00 22.24 0.22 -0.43 16 19 C -0.12 -1.36 10.06 22.41 0.23 -1.14 16 20 C 0.12 2.17 7.32 39.13 0.29 2.46 16 21 N -0.50 -9.15 7.45 -51.56 -0.38 -9.53 16 22 H 0.46 5.00 8.96 -213.36 -1.91 3.09 16 23 N -0.27 -6.63 12.58 -56.44 -0.71 -7.34 16 24 C 0.07 1.70 11.84 85.65 1.01 2.71 16 25 C -0.17 -4.03 6.00 -21.20 -0.13 -4.16 16 26 C 0.11 2.33 5.54 86.51 0.48 2.81 16 27 C -0.14 -4.30 5.67 30.82 0.17 -4.13 16 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 30 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 2.25 7.03 -2.38 -0.02 2.23 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.15 1.72 7.34 -2.91 -0.02 1.70 16 36 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.11 1.97 4.73 -2.38 -0.01 1.96 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -76.28 344.48 0.74 -75.54 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -1.43 Total: 24.84 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.15 Total: 2.20 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -4.82 Total: -130.74 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.07 Total: -19.11 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Total: -76.28 0.74 -75.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996863820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.187 kcal (2) G-P(sol) polarization free energy of solvation -76.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds