Wall clock time and date at job start Fri Apr 10 2020 22:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48502 * 109.47096 * 240.00157 * 3 2 1 5 5 H 1.48506 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47401 * 119.99921 * 3 2 1 7 7 C 1.38812 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00196 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45915 * 204.99883 * 10 9 7 12 12 C 1.53195 * 109.31256 * 178.62272 * 11 10 9 13 13 N 1.46925 * 108.77578 * 54.63261 * 12 11 10 14 14 C 1.34778 * 120.63480 * 126.36584 * 13 12 11 15 15 O 1.21566 * 120.00363 * 187.79448 * 14 13 12 16 16 C 1.47772 * 119.99460 * 7.79514 * 14 13 12 17 17 N 1.32739 * 120.06037 * 7.52499 * 16 14 13 18 18 C 1.31718 * 122.13532 * 179.97438 * 17 16 14 19 19 C 1.38309 * 121.68946 * 359.97438 * 18 17 16 20 20 C 1.39021 * 119.08722 * 0.04389 * 19 18 17 21 21 N 1.37194 * 134.64307 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.06941 * 359.97329 * 21 20 19 23 23 C 1.36719 * 109.87318 * 180.23729 * 21 20 19 24 24 C 1.34570 * 109.96103 * 359.54956 * 23 21 20 25 25 C 1.40401 * 120.05494 * 187.50215 * 16 14 13 26 26 C 1.46926 * 118.73942 * 306.64526 * 13 12 11 27 27 C 1.52768 * 109.00904 * 53.30605 * 26 13 12 28 28 H 0.97002 * 120.00037 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00127 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.45892 * 324.96214 * 10 9 7 31 31 H 1.08998 * 109.50150 * 58.67451 * 11 10 9 32 32 H 1.09005 * 109.49907 * 298.56982 * 11 10 9 33 33 H 1.09001 * 109.58897 * 294.84472 * 12 11 10 34 34 H 1.09007 * 109.70520 * 174.48883 * 12 11 10 35 35 H 1.08005 * 119.15438 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.45595 * 180.02562 * 19 18 17 37 37 H 1.07997 * 125.02595 * 179.71179 * 23 21 20 38 38 H 1.07989 * 126.51115 * 180.13774 * 24 23 21 39 39 H 1.09001 * 109.58958 * 173.13977 * 26 13 12 40 40 H 1.09000 * 109.58513 * 293.57057 * 26 13 12 41 41 H 1.09000 * 109.56294 * 185.55482 * 27 26 13 42 42 H 1.08994 * 109.35804 * 65.50144 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.1808 -4.7524 -0.6083 12 6 1.9622 -6.0698 -0.6370 13 7 2.4406 -6.3655 0.7203 14 6 2.1713 -7.5520 1.3001 15 8 2.4473 -7.7336 2.4700 16 6 1.5404 -8.6323 0.5135 17 7 1.3747 -8.4917 -0.7959 18 6 0.8181 -9.4281 -1.5363 19 6 0.3727 -10.6178 -0.9893 20 6 0.5160 -10.8288 0.3773 21 7 0.1992 -11.8533 1.2330 22 1 -0.2258 -12.6855 0.9729 23 6 0.5665 -11.5242 2.5082 24 6 1.1322 -10.3032 2.5226 25 6 1.1157 -9.8095 1.1499 26 6 3.2128 -5.3408 1.4361 27 6 2.4221 -4.0337 1.4395 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.9688 -3.5507 -0.5877 31 1 0.9026 -4.4723 -1.6243 32 1 0.2812 -4.8762 -0.0052 33 1 2.8130 -5.9753 -1.3118 34 1 1.3123 -6.8753 -0.9790 35 1 0.7075 -9.2631 -2.5980 36 1 -0.0804 -11.3723 -1.6152 37 1 0.4261 -12.1523 3.3754 38 1 1.5198 -9.7849 3.3871 39 1 3.3858 -5.6642 2.4626 40 1 4.1677 -5.1857 0.9339 41 1 3.0274 -3.2421 1.8810 42 1 1.5109 -4.1642 2.0232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997020468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:34 Heat of formation + Delta-G solvation = 70.071035 kcal Electronic energy + Delta-G solvation = -25706.071057 eV Core-core repulsion = 22073.679642 eV Total energy + Delta-G solvation = -3632.391415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91410 -39.87891 -38.14097 -37.18349 -34.36107 -32.64823 -31.87500 -31.07002 -30.43481 -29.58485 -28.91314 -25.44212 -24.20909 -23.03492 -22.66633 -22.34048 -21.27309 -20.43651 -19.25270 -18.26320 -17.51500 -16.90636 -16.28031 -15.78265 -15.48722 -15.40447 -14.85633 -14.68807 -14.59978 -13.93800 -13.64581 -13.47236 -13.35380 -13.25793 -13.16237 -13.02452 -12.62669 -12.23308 -11.99367 -11.79225 -11.40477 -10.83864 -10.75353 -10.68594 -10.29188 -10.21283 -10.19432 -10.04603 -9.87888 -9.62453 -9.19904 -8.86628 -8.72150 -8.35779 -8.10747 -6.88509 -5.70320 -2.98587 0.28635 1.18496 2.35777 2.63876 2.82207 3.17262 3.48223 3.52422 3.53429 3.81748 4.07029 4.29617 4.48993 4.64760 4.67980 4.81886 5.04031 5.15723 5.23191 5.46092 5.51480 5.58327 5.63999 5.70003 5.71780 5.76566 5.92006 5.95901 6.12183 6.14722 6.31516 6.37286 6.50839 6.51992 6.56956 6.70456 6.72409 6.85349 7.04217 7.12229 7.19859 7.56270 7.74358 7.75391 8.34379 8.48513 9.59282 10.18501 10.53403 11.52463 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.002815 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.821014 B = 9943.448330 C =10367.930799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.139 4.139 12 C 0.072 3.928 13 N -0.581 5.581 14 C 0.567 3.433 15 O -0.539 6.539 16 C 0.145 3.855 17 N -0.461 5.461 18 C 0.094 3.906 19 C -0.162 4.162 20 C 0.120 3.880 21 N -0.589 5.589 22 H 0.419 0.581 23 C 0.044 3.956 24 C -0.165 4.165 25 C -0.111 4.111 26 C 0.110 3.890 27 C -0.148 4.148 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 -28.153 -0.715 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.178 4.178 12 C -0.051 4.051 13 N -0.312 5.312 14 C 0.353 3.647 15 O -0.417 6.417 16 C 0.001 3.999 17 N -0.174 5.174 18 C -0.058 4.058 19 C -0.185 4.185 20 C 0.005 3.995 21 N -0.193 5.193 22 H 0.256 0.744 23 C -0.081 4.081 24 C -0.190 4.190 25 C -0.119 4.119 26 C -0.012 4.012 27 C -0.190 4.190 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.153 0.847 37 H 0.195 0.805 38 H 0.180 0.820 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.793 -27.429 -0.530 27.446 hybrid contribution -0.398 -0.084 0.223 0.464 sum 0.394 -27.513 -0.307 27.518 Atomic orbital electron populations 1.69655 1.05102 1.25652 1.57889 1.24735 0.95495 0.97635 1.03228 0.86284 0.78507 0.83684 0.77814 1.21323 1.21777 1.21320 1.19209 0.90950 0.84191 1.42405 0.91259 1.42445 1.05772 0.99783 1.88496 1.20221 0.94488 0.86090 0.92512 1.22229 0.99117 0.94723 1.01743 1.23122 1.00308 1.00172 0.81495 1.48024 1.52224 1.13626 1.17353 1.17743 0.79054 0.81948 0.85942 1.90729 1.54168 1.81415 1.15350 1.20786 0.96751 0.92687 0.89713 1.67611 1.15583 1.28955 1.05228 1.22582 0.94664 0.88410 1.00149 1.21156 1.05453 1.00496 0.91393 1.18288 0.99671 0.89298 0.92204 1.41654 1.54276 1.16975 1.06444 0.74381 1.22103 1.01201 0.97990 0.86763 1.21965 1.05881 0.95208 0.95975 1.19809 1.02782 0.94262 0.95096 1.21680 0.93940 0.87975 0.97628 1.22562 1.00122 0.94781 1.01489 0.93546 0.78345 0.93531 0.90779 0.92335 0.92017 0.83541 0.81631 0.84708 0.80530 0.81968 0.89745 0.91718 0.90820 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.60 5.12 -53.39 -0.27 -18.88 16 10 C 0.18 3.63 2.73 -67.89 -0.19 3.45 16 11 C -0.14 -2.44 5.55 -26.61 -0.15 -2.58 16 12 C 0.07 1.08 5.92 -3.71 -0.02 1.06 16 13 N -0.58 -9.47 2.98 -174.16 -0.52 -9.98 16 14 C 0.57 9.44 7.65 -12.36 -0.09 9.35 16 15 O -0.54 -9.93 14.62 5.31 0.08 -9.85 16 16 C 0.14 2.07 6.64 -82.76 -0.55 1.53 16 17 N -0.46 -5.75 6.08 -9.66 -0.06 -5.81 16 18 C 0.09 0.87 11.13 -17.57 -0.20 0.67 16 19 C -0.16 -1.30 10.14 -39.26 -0.40 -1.69 16 20 C 0.12 1.17 7.34 -84.03 -0.62 0.55 16 21 N -0.59 -3.96 6.05 -10.59 -0.06 -4.02 16 22 H 0.42 1.29 8.96 -40.82 -0.37 0.92 16 23 C 0.04 0.32 11.82 -16.67 -0.20 0.13 16 24 C -0.16 -1.85 10.27 -37.82 -0.39 -2.24 16 25 C -0.11 -1.43 6.15 -104.88 -0.64 -2.07 16 26 C 0.11 1.82 6.42 -3.93 -0.03 1.80 16 27 C -0.15 -2.84 5.64 -26.83 -0.15 -3.00 16 28 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.38 10.50 7.80 -40.82 -0.32 10.18 16 30 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.15 2.08 3.95 -87.38 -0.34 1.73 16 35 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.16 1.95 7.26 -52.49 -0.38 1.56 16 39 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -34.95 343.81 -9.36 -44.31 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.54 Total: 9.73 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.86 Total: -0.40 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.19 Total: -66.69 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.95 -9.36 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997020468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.383 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds