Wall clock time and date at job start Fri Apr 10 2020 22:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48502 * 109.47096 * 240.00157 * 3 2 1 5 5 H 1.48506 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47401 * 119.99921 * 3 2 1 7 7 C 1.38812 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00196 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45915 * 204.99883 * 10 9 7 12 12 C 1.53195 * 109.31256 * 178.62272 * 11 10 9 13 13 N 1.46925 * 108.77578 * 54.63261 * 12 11 10 14 14 C 1.34778 * 120.63480 * 126.36584 * 13 12 11 15 15 O 1.21566 * 120.00363 * 187.79448 * 14 13 12 16 16 C 1.47772 * 119.99460 * 7.79514 * 14 13 12 17 17 N 1.32739 * 120.06037 * 7.52499 * 16 14 13 18 18 C 1.31718 * 122.13532 * 179.97438 * 17 16 14 19 19 C 1.38309 * 121.68946 * 359.97438 * 18 17 16 20 20 C 1.39021 * 119.08722 * 0.04389 * 19 18 17 21 21 N 1.37194 * 134.64307 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.06941 * 359.97329 * 21 20 19 23 23 C 1.36719 * 109.87318 * 180.23729 * 21 20 19 24 24 C 1.34570 * 109.96103 * 359.54956 * 23 21 20 25 25 C 1.40401 * 120.05494 * 187.50215 * 16 14 13 26 26 C 1.46926 * 118.73942 * 306.64526 * 13 12 11 27 27 C 1.52768 * 109.00904 * 53.30605 * 26 13 12 28 28 H 0.97002 * 120.00037 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00127 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.45892 * 324.96214 * 10 9 7 31 31 H 1.08998 * 109.50150 * 58.67451 * 11 10 9 32 32 H 1.09005 * 109.49907 * 298.56982 * 11 10 9 33 33 H 1.09001 * 109.58897 * 294.84472 * 12 11 10 34 34 H 1.09007 * 109.70520 * 174.48883 * 12 11 10 35 35 H 1.08005 * 119.15438 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.45595 * 180.02562 * 19 18 17 37 37 H 1.07997 * 125.02595 * 179.71179 * 23 21 20 38 38 H 1.07989 * 126.51115 * 180.13774 * 24 23 21 39 39 H 1.09001 * 109.58958 * 173.13977 * 26 13 12 40 40 H 1.09000 * 109.58513 * 293.57057 * 26 13 12 41 41 H 1.09000 * 109.56294 * 185.55482 * 27 26 13 42 42 H 1.08994 * 109.35804 * 65.50144 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.1808 -4.7524 -0.6083 12 6 1.9622 -6.0698 -0.6370 13 7 2.4406 -6.3655 0.7203 14 6 2.1713 -7.5520 1.3001 15 8 2.4473 -7.7336 2.4700 16 6 1.5404 -8.6323 0.5135 17 7 1.3747 -8.4917 -0.7959 18 6 0.8181 -9.4281 -1.5363 19 6 0.3727 -10.6178 -0.9893 20 6 0.5160 -10.8288 0.3773 21 7 0.1992 -11.8533 1.2330 22 1 -0.2258 -12.6855 0.9729 23 6 0.5665 -11.5242 2.5082 24 6 1.1322 -10.3032 2.5226 25 6 1.1157 -9.8095 1.1499 26 6 3.2128 -5.3408 1.4361 27 6 2.4221 -4.0337 1.4395 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.9688 -3.5507 -0.5877 31 1 0.9026 -4.4723 -1.6243 32 1 0.2812 -4.8762 -0.0052 33 1 2.8130 -5.9753 -1.3118 34 1 1.3123 -6.8753 -0.9790 35 1 0.7075 -9.2631 -2.5980 36 1 -0.0804 -11.3723 -1.6152 37 1 0.4261 -12.1523 3.3754 38 1 1.5198 -9.7849 3.3871 39 1 3.3858 -5.6642 2.4626 40 1 4.1677 -5.1857 0.9339 41 1 3.0274 -3.2421 1.8810 42 1 1.5109 -4.1642 2.0232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997020468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:33 Heat of formation + Delta-G solvation = 46.056588 kcal Electronic energy + Delta-G solvation = -25707.112402 eV Core-core repulsion = 22073.679642 eV Total energy + Delta-G solvation = -3633.432759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.66390 -41.06296 -39.01304 -38.63500 -36.12177 -33.90979 -33.29212 -32.11824 -31.51636 -31.07643 -30.04836 -26.85011 -25.67578 -24.20922 -24.01988 -23.45477 -22.29635 -21.54538 -20.55682 -19.30172 -18.92272 -18.45757 -17.22083 -16.85438 -16.65561 -16.53572 -16.17093 -15.75891 -15.57875 -15.41180 -15.32681 -15.06214 -14.68584 -14.47743 -14.09274 -13.84351 -13.78406 -13.72413 -13.20142 -13.05824 -12.80519 -12.73966 -12.62068 -12.22436 -12.12468 -11.93745 -11.66849 -11.52913 -11.20586 -10.95256 -10.88406 -10.01855 -9.76661 -9.63997 -8.99454 -8.85766 -7.92271 -5.21136 -0.54481 0.44498 1.47522 1.50935 1.56716 1.58384 1.81698 1.95473 2.10805 2.57502 2.91680 3.12719 3.40191 3.55019 3.85398 3.86581 3.94075 4.05059 4.09598 4.21654 4.25364 4.39122 4.45078 4.46291 4.53837 4.62384 4.67537 4.81849 4.92050 4.93978 5.02162 5.05381 5.12681 5.22154 5.33642 5.47774 5.50910 5.54963 5.59963 5.75319 5.96071 6.29327 6.40564 6.59659 6.80549 7.14570 7.35012 8.10763 8.35103 9.31285 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.002815 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.821014 B = 9943.448330 C =10367.930799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.081 3.919 13 N -0.588 5.588 14 C 0.561 3.439 15 O -0.570 6.570 16 C 0.101 3.899 17 N -0.472 5.472 18 C 0.080 3.920 19 C -0.134 4.134 20 C 0.109 3.891 21 N -0.571 5.571 22 H 0.441 0.559 23 C 0.089 3.911 24 C -0.224 4.224 25 C -0.133 4.133 26 C 0.118 3.882 27 C -0.136 4.136 28 H 0.250 0.750 29 H 0.370 0.630 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.201 0.799 36 H 0.180 0.820 37 H 0.222 0.778 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -31.310 -2.191 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.167 4.167 12 C -0.041 4.041 13 N -0.318 5.318 14 C 0.349 3.651 15 O -0.449 6.449 16 C -0.041 4.041 17 N -0.185 5.185 18 C -0.073 4.073 19 C -0.156 4.156 20 C -0.006 4.006 21 N -0.177 5.177 22 H 0.282 0.718 23 C -0.038 4.038 24 C -0.249 4.249 25 C -0.142 4.142 26 C -0.005 4.005 27 C -0.177 4.177 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.218 0.782 36 H 0.197 0.803 37 H 0.239 0.761 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.777 -30.646 -2.025 30.723 hybrid contribution -0.434 0.668 0.688 1.053 sum 0.343 -29.978 -1.337 30.010 Atomic orbital electron populations 1.69823 1.06664 1.26022 1.59795 1.25570 0.96370 1.01105 1.03988 0.85215 0.77171 0.79211 0.78198 1.20177 1.22280 1.20586 1.19608 0.91446 0.85208 1.40718 0.90565 1.42660 1.05359 1.01020 1.88582 1.20444 0.94653 0.85110 0.93333 1.22121 0.98306 0.95025 1.01244 1.23199 1.00761 0.98977 0.81155 1.48096 1.52438 1.13630 1.17680 1.18260 0.78445 0.82451 0.85899 1.90690 1.55440 1.82066 1.16748 1.20381 1.00256 0.92957 0.90545 1.67286 1.15996 1.30627 1.04602 1.23205 0.94349 0.88402 1.01379 1.21629 1.02571 1.00522 0.90911 1.18508 0.99834 0.89322 0.92983 1.41678 1.53237 1.17093 1.05689 0.71751 1.22659 0.96787 0.96356 0.87979 1.21942 1.10066 0.97636 0.95302 1.20116 1.02998 0.94705 0.96365 1.21525 0.94237 0.86702 0.98000 1.22344 0.99300 0.95999 1.00024 0.94113 0.79812 0.93296 0.90359 0.93768 0.90798 0.81991 0.78223 0.80316 0.76138 0.84239 0.90222 0.89919 0.92048 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.97 47.27 29.55 68.60 2.03 49.29 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 7 C -0.24 -13.58 9.93 84.03 0.83 -12.75 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -38.88 5.12 -322.83 -1.65 -40.53 16 10 C 0.17 7.25 2.73 45.02 0.12 7.37 16 11 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 12 C 0.08 2.43 5.92 86.36 0.51 2.94 16 13 N -0.59 -19.64 2.98 -823.19 -2.45 -22.09 16 14 C 0.56 19.56 7.65 86.76 0.66 20.23 16 15 O -0.57 -22.43 14.62 -3.92 -0.06 -22.49 16 16 C 0.10 2.93 6.64 42.06 0.28 3.21 16 17 N -0.47 -11.28 6.08 -184.48 -1.12 -12.40 16 18 C 0.08 1.23 11.13 84.73 0.94 2.17 16 19 C -0.13 -1.60 10.14 22.47 0.23 -1.37 16 20 C 0.11 1.81 7.34 39.24 0.29 2.10 16 21 N -0.57 -5.46 6.05 -187.43 -1.13 -6.59 16 22 H 0.44 0.48 8.96 -92.71 -0.83 -0.35 16 23 C 0.09 1.05 11.82 83.09 0.98 2.04 16 24 C -0.22 -5.07 10.27 23.41 0.24 -4.83 16 25 C -0.13 -3.38 6.15 -20.03 -0.12 -3.51 16 26 C 0.12 4.03 6.42 86.22 0.55 4.58 16 27 C -0.14 -5.41 5.64 30.53 0.17 -5.24 16 28 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.37 21.10 7.80 -92.71 -0.72 20.38 16 30 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.16 4.50 3.95 -72.39 -0.29 4.22 16 35 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.22 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.14 3.68 7.26 -2.92 -0.02 3.66 16 39 H 0.08 2.80 7.00 -2.39 -0.02 2.78 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -80.25 343.81 1.47 -78.78 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.76 Total: 28.54 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.33 Total: 8.41 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -6.08 Total: -142.53 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -80.25 1.47 -78.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997020468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.836 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds