Wall clock time and date at job start Fri Apr 10 2020 22:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48505 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47290 * 300.00080 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00523 * 3 2 1 7 7 C 1.38812 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99638 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45752 * 154.99942 * 10 9 7 12 12 C 1.53191 * 109.31367 * 181.37378 * 11 10 9 13 13 N 1.46929 * 108.77571 * 305.36862 * 12 11 10 14 14 C 1.34776 * 120.62836 * 233.58945 * 13 12 11 15 15 O 1.21726 * 120.00147 * 5.92118 * 14 13 12 16 16 C 1.46563 * 120.00223 * 185.93311 * 14 13 12 17 17 C 1.40556 * 126.58134 * 36.94156 * 16 14 13 18 18 N 1.30736 * 108.74837 * 179.97438 * 17 16 14 19 19 N 1.40020 * 109.60083 * 0.02562 * 18 17 16 20 20 C 1.36240 * 132.00910 * 179.97438 * 19 18 17 21 21 C 1.35186 * 120.70810 * 180.02562 * 20 19 18 22 22 C 1.40163 * 120.31601 * 0.02562 * 21 20 19 23 23 C 1.36451 * 119.40872 * 359.97438 * 22 21 20 24 24 C 1.36577 * 107.90837 * 0.02562 * 19 18 17 25 25 C 1.46920 * 118.74015 * 53.85285 * 13 12 11 26 26 C 1.53042 * 109.45152 * 275.05860 * 10 9 7 27 27 H 0.97000 * 120.00188 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00497 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.46174 * 35.02763 * 10 9 7 30 30 H 1.08994 * 109.49795 * 61.42129 * 11 10 9 31 31 H 1.09004 * 109.52435 * 301.33732 * 11 10 9 32 32 H 1.09002 * 109.58831 * 185.57784 * 12 11 10 33 33 H 1.09000 * 109.70426 * 65.22233 * 12 11 10 34 34 H 1.07998 * 125.62696 * 359.97438 * 17 16 14 35 35 H 1.08006 * 119.64994 * 0.03299 * 20 19 18 36 36 H 1.07999 * 119.84407 * 180.27428 * 21 20 19 37 37 H 1.08000 * 120.29354 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.36974 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.58380 * 65.93510 * 25 13 12 40 40 H 1.08997 * 109.58815 * 186.35668 * 25 13 12 41 41 H 1.08997 * 109.49603 * 298.57360 * 26 10 9 42 42 H 1.09005 * 109.49417 * 58.67111 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9618 -6.0695 0.6402 13 7 2.4411 -6.3659 -0.7167 14 6 2.1729 -7.5530 -1.2956 15 8 1.4389 -8.3492 -0.7398 16 6 2.7653 -7.8855 -2.5943 17 6 4.0567 -7.5502 -3.0365 18 7 4.2219 -8.0193 -4.2455 19 7 3.0578 -8.6803 -4.6561 20 6 2.7351 -9.3257 -5.8117 21 6 1.5188 -9.8947 -5.9681 22 6 0.5689 -9.8279 -4.9396 23 6 0.8828 -9.1836 -3.7784 24 6 2.1493 -8.6014 -3.6393 25 6 3.2233 -5.3458 -1.4281 26 6 2.4231 -4.0345 -1.4369 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.9685 -3.5505 0.5905 30 1 0.2813 -4.8761 0.0068 31 1 0.9010 -4.4719 1.6261 32 1 1.3096 -6.8736 0.9812 33 1 2.8120 -5.9772 1.3161 34 1 4.7913 -6.9964 -2.4707 35 1 3.4587 -9.3835 -6.6114 36 1 1.2794 -10.4067 -6.8883 37 1 -0.4028 -10.2822 -5.0651 38 1 0.1628 -9.1231 -2.9757 39 1 4.1745 -5.1932 -0.9180 40 1 3.4039 -5.6721 -2.4523 41 1 1.5122 -4.1652 -2.0212 42 1 3.0287 -3.2430 -1.8784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997099792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:38 Heat of formation + Delta-G solvation = 67.480657 kcal Electronic energy + Delta-G solvation = -25685.268569 eV Core-core repulsion = 22052.764827 eV Total energy + Delta-G solvation = -3632.503742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.22841 -40.92294 -38.60997 -38.23329 -36.09986 -34.17926 -33.69461 -32.19247 -31.82403 -31.05122 -29.66458 -26.68725 -24.98862 -24.94534 -24.44003 -23.46394 -23.02635 -21.57600 -20.24686 -19.10651 -18.75905 -17.77333 -17.48143 -17.13442 -16.81149 -16.65552 -16.41398 -15.96577 -15.66901 -15.47288 -15.36208 -15.03152 -14.72400 -14.33279 -14.31290 -13.72992 -13.32530 -13.17141 -13.13352 -12.97595 -12.87789 -12.82238 -12.55370 -12.19403 -12.09724 -11.99851 -11.98104 -11.69301 -11.55077 -11.29295 -10.99086 -10.80381 -10.46799 -9.65973 -9.00390 -8.70253 -7.92227 -5.21000 -0.34686 -0.01038 1.09709 1.13725 1.48833 1.49242 1.59245 1.90406 2.17440 2.47170 2.57940 3.14710 3.41228 3.51418 3.74579 3.83939 3.86779 3.88631 3.99636 4.10585 4.12007 4.18413 4.30497 4.39244 4.42983 4.49916 4.63074 4.70693 4.78602 4.86683 4.88828 5.02048 5.04801 5.08956 5.19897 5.23718 5.34346 5.40616 5.51139 5.55761 5.66202 5.76684 6.29497 6.35160 6.46001 7.20870 7.35290 8.11100 8.34276 9.31827 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002979 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.564623 B = 9396.611599 C = 9765.221395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.127 4.127 12 C 0.125 3.875 13 N -0.602 5.602 14 C 0.600 3.400 15 O -0.590 6.590 16 C -0.344 4.344 17 C 0.124 3.876 18 N -0.342 5.342 19 N -0.272 5.272 20 C 0.095 3.905 21 C -0.144 4.144 22 C -0.049 4.049 23 C -0.147 4.147 24 C 0.143 3.857 25 C 0.112 3.888 26 C -0.139 4.139 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.202 0.798 36 H 0.206 0.794 37 H 0.180 0.820 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -23.157 -12.707 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.066 3.934 11 C -0.166 4.166 12 C 0.002 3.998 13 N -0.333 5.333 14 C 0.391 3.609 15 O -0.473 6.473 16 C -0.358 4.358 17 C -0.055 4.055 18 N -0.163 5.163 19 N -0.036 5.036 20 C -0.030 4.030 21 C -0.164 4.164 22 C -0.072 4.072 23 C -0.167 4.167 24 C 0.022 3.978 25 C -0.011 4.011 26 C -0.180 4.180 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.239 0.761 35 H 0.219 0.781 36 H 0.223 0.777 37 H 0.198 0.802 38 H 0.157 0.843 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.383 -23.457 -13.337 27.976 hybrid contribution -0.911 1.537 0.932 2.015 sum 6.472 -21.921 -12.405 26.005 Atomic orbital electron populations 1.69839 1.06739 1.25803 1.60072 1.25567 0.96318 1.01136 1.04195 0.85096 0.78465 0.79971 0.76401 1.18620 1.22431 1.22364 1.19691 0.91558 0.85001 1.40137 0.90118 1.42696 1.05387 1.01136 1.88576 1.20421 0.94477 0.84596 0.93893 1.22053 0.98445 0.94660 1.01446 1.21546 0.99233 0.96292 0.82706 1.47975 1.54152 1.14387 1.16814 1.17194 0.79245 0.80856 0.83640 1.90717 1.40074 1.50579 1.65896 1.19613 0.98518 1.19468 0.98237 1.24457 0.95517 0.94098 0.91444 1.77504 1.02722 1.20079 1.16001 1.46295 1.10395 1.35003 1.11861 1.22460 0.99955 0.93600 0.87031 1.21558 0.90821 1.01505 1.02529 1.21847 1.01508 0.93355 0.90488 1.20851 0.93710 1.00902 1.01247 1.19552 0.92129 0.97079 0.89063 1.22161 0.94456 0.86278 0.98161 1.22517 0.99450 0.96560 0.99433 0.94230 0.79952 0.92671 0.93655 0.90660 0.89777 0.89169 0.76091 0.78118 0.77717 0.80244 0.84310 0.88523 0.88736 0.94530 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.23 -12.66 9.93 84.03 0.83 -11.83 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -37.14 5.12 -322.80 -1.65 -38.79 16 10 C 0.17 6.69 2.73 45.02 0.12 6.82 16 11 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 12 C 0.12 3.60 6.44 86.36 0.56 4.16 16 13 N -0.60 -17.48 2.97 -822.89 -2.44 -19.92 16 14 C 0.60 19.22 7.56 86.41 0.65 19.88 16 15 O -0.59 -22.35 16.28 -4.43 -0.07 -22.42 16 16 C -0.34 -9.69 5.35 -19.90 -0.11 -9.80 16 17 C 0.12 2.92 9.52 85.42 0.81 3.73 16 18 N -0.34 -8.33 12.57 -56.62 -0.71 -9.04 16 19 N -0.27 -5.99 3.86 -187.28 -0.72 -6.71 16 20 C 0.10 1.18 11.17 83.30 0.93 2.11 16 21 C -0.14 -1.05 9.98 22.03 0.22 -0.83 16 22 C -0.05 -0.55 10.09 22.32 0.23 -0.33 16 23 C -0.15 -3.11 9.99 22.30 0.22 -2.89 16 24 C 0.14 3.69 6.76 39.49 0.27 3.96 16 25 C 0.11 2.90 5.38 86.51 0.47 3.37 16 26 C -0.14 -4.76 5.67 30.82 0.17 -4.59 16 27 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.37 20.39 7.80 -92.71 -0.72 19.66 16 29 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.08 2.55 7.00 -2.39 -0.02 2.53 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.22 3.73 7.05 -2.91 -0.02 3.71 16 35 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 37 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 38 H 0.14 3.28 7.92 -2.91 -0.02 3.25 16 39 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.09 2.26 4.60 -2.39 -0.01 2.25 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -78.75 347.97 3.05 -75.69 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.33 Total: 27.60 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.02 Total: 5.46 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -5.25 Total: -134.36 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.07 Total: -22.42 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.75 3.05 -75.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997099792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.173 kcal (2) G-P(sol) polarization free energy of solvation -78.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds