Wall clock time and date at job start Fri Apr 10 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48501 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47039 * 300.00298 * 3 2 1 6 6 H 1.48501 * 109.47211 * 60.00411 * 3 2 1 7 7 C 1.38816 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99988 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49378 * 324.99517 * 10 9 7 12 12 C 1.53045 * 109.52298 * 204.92227 * 10 9 7 13 13 C 1.53044 * 109.53523 * 178.66440 * 12 10 9 14 14 C 1.53191 * 109.31273 * 61.36631 * 13 12 10 15 15 N 1.46924 * 108.77287 * 305.35880 * 14 13 12 16 16 C 1.34776 * 120.63434 * 233.58776 * 15 14 13 17 17 O 1.21579 * 120.00505 * 174.18565 * 16 15 14 18 18 C 1.47606 * 119.99722 * 354.18527 * 16 15 14 19 19 C 1.38566 * 119.74069 * 138.52115 * 18 16 15 20 20 N 1.33776 * 122.05377 * 179.97438 * 19 18 16 21 21 H 0.97006 * 119.62260 * 179.97438 * 20 19 18 22 22 C 1.37226 * 120.74357 * 0.02562 * 20 19 18 23 23 N 1.31991 * 134.47465 * 179.97438 * 22 20 19 24 24 C 1.33412 * 110.93194 * 179.97438 * 23 22 20 25 25 C 1.35786 * 110.89149 * 359.97438 * 24 23 22 26 26 C 1.41376 * 106.44806 * 359.97438 * 25 24 23 27 27 C 1.38761 * 135.64735 * 180.31524 * 26 25 24 28 28 C 1.46927 * 118.73861 * 53.61315 * 15 14 13 29 29 H 0.97001 * 120.00303 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00186 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45877 * 298.68012 * 12 10 9 32 32 H 1.08996 * 109.46156 * 58.64311 * 12 10 9 33 33 H 1.08998 * 109.49616 * 301.40791 * 13 12 10 34 34 H 1.09002 * 109.51931 * 181.32912 * 13 12 10 35 35 H 1.09002 * 109.58372 * 185.57769 * 14 13 12 36 36 H 1.08996 * 109.70929 * 65.22031 * 14 13 12 37 37 H 1.07997 * 118.97398 * 0.02562 * 19 18 16 38 38 H 1.07997 * 124.55416 * 180.02562 * 24 23 22 39 39 H 1.07998 * 126.77391 * 179.97438 * 25 24 23 40 40 H 1.08011 * 120.73390 * 359.89753 * 27 26 25 41 41 H 1.08996 * 109.58899 * 186.60276 * 28 15 14 42 42 H 1.09005 * 109.70072 * 66.24778 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9688 -3.5509 -0.5900 12 6 1.1809 -4.7537 -0.6084 13 6 1.9578 -6.0719 -0.6391 14 6 2.3199 -6.4801 0.7924 15 7 3.0392 -5.3705 1.4328 16 6 4.2428 -5.5717 2.0050 17 8 4.8756 -4.6281 2.4377 18 6 4.7927 -6.9378 2.1064 19 6 6.1364 -7.1586 1.8504 20 7 6.6833 -8.3770 1.9291 21 1 7.6283 -8.4914 1.7421 22 6 5.9223 -9.4667 2.2703 23 7 6.1681 -10.7543 2.4250 24 6 5.0608 -11.4125 2.7722 25 6 4.0034 -10.5658 2.8659 26 6 4.4934 -9.2773 2.5521 27 6 3.9515 -8.0025 2.4704 28 6 2.4214 -4.0375 1.4381 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.2819 -4.8761 -0.0044 32 1 0.9006 -4.4737 -1.6238 33 1 2.8695 -5.9434 -1.2224 34 1 1.3414 -6.8475 -1.0936 35 1 2.9571 -7.3642 0.7702 36 1 1.4112 -6.6986 1.3533 37 1 6.7620 -6.3209 1.5798 38 1 5.0121 -12.4758 2.9550 39 1 2.9885 -10.8254 3.1283 40 1 2.9045 -7.8335 2.6751 41 1 3.1254 -3.3100 1.8419 42 1 1.5199 -4.0527 2.0508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999427455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:46 Heat of formation + Delta-G solvation = 71.629850 kcal Electronic energy + Delta-G solvation = -25650.990657 eV Core-core repulsion = 22018.666838 eV Total energy + Delta-G solvation = -3632.323820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80573 -40.08013 -38.32648 -37.29003 -34.92736 -33.97126 -32.29392 -31.23571 -29.99448 -29.10999 -28.27625 -25.62883 -24.62742 -23.94688 -23.15523 -21.95863 -21.55170 -20.22640 -19.01193 -18.23984 -17.50220 -17.13944 -16.86040 -16.34088 -15.93414 -15.50554 -15.04582 -14.98556 -14.48757 -14.24361 -13.86311 -13.68567 -13.42724 -13.32430 -12.89970 -12.69580 -12.62796 -12.46016 -12.40724 -12.06716 -11.48227 -11.24316 -10.92191 -10.89640 -10.67581 -10.57720 -10.22164 -9.96552 -9.87981 -9.72834 -9.67559 -9.14260 -8.52976 -8.36410 -8.02062 -7.05224 -5.83121 -3.13195 -0.10053 0.83451 1.97717 2.66345 3.00030 3.20388 3.29945 3.41261 3.47893 3.49702 3.89998 4.18952 4.22209 4.47643 4.53882 4.74142 4.85653 4.89706 5.01839 5.18188 5.29400 5.41916 5.45734 5.48445 5.57280 5.66947 5.71326 5.74566 5.85588 5.95159 6.04994 6.09995 6.14810 6.24721 6.28042 6.41387 6.56848 6.62411 6.75821 6.87353 6.92685 7.48701 7.67844 7.82300 8.16883 8.34947 9.46936 10.00510 10.35509 11.39107 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.002926 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.986458 B = 9567.011073 C =10221.718987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.129 4.129 14 C 0.099 3.901 15 N -0.596 5.596 16 C 0.569 3.431 17 O -0.536 6.536 18 C -0.226 4.226 19 C 0.199 3.801 20 N -0.490 5.490 21 H 0.428 0.572 22 C 0.245 3.755 23 N -0.533 5.533 24 C 0.053 3.947 25 C -0.225 4.225 26 C -0.169 4.169 27 C 0.059 3.941 28 C 0.092 3.908 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.189 0.811 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 -20.466 2.216 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.024 4.024 15 N -0.329 5.329 16 C 0.355 3.645 17 O -0.413 6.413 18 C -0.235 4.235 19 C 0.055 3.945 20 N -0.083 5.083 21 H 0.266 0.734 22 C -0.004 4.004 23 N -0.253 5.253 24 C -0.090 4.090 25 C -0.247 4.247 26 C -0.177 4.177 27 C 0.035 3.965 28 C -0.032 4.032 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.206 0.794 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.111 0.889 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.630 -20.398 2.330 22.677 hybrid contribution -0.401 1.173 0.117 1.245 sum 9.228 -19.225 2.447 21.465 Atomic orbital electron populations 1.69665 1.05137 1.25717 1.57410 1.24754 0.95515 0.97789 1.02606 0.86124 0.78951 0.83990 0.77195 1.20416 1.21843 1.21770 1.19305 0.91123 0.83926 1.43046 0.90956 1.42386 1.05833 0.99577 1.88057 1.20480 0.94960 0.86475 0.92310 0.93066 1.21839 0.98711 0.94028 1.01954 1.21875 1.00989 0.98302 0.95603 1.22035 0.96870 0.89253 0.94225 1.48159 1.18454 1.11436 1.54831 1.17696 0.81378 0.86919 0.78498 1.90829 1.58799 1.42866 1.48855 1.19348 0.93190 0.95545 1.15440 1.22136 0.94935 0.86098 0.91363 1.40291 1.13222 1.04498 1.50291 0.73419 1.20478 0.89045 0.88730 1.02165 1.69526 1.30962 1.00845 1.23954 1.22334 0.88038 0.99125 0.99522 1.21397 1.00424 0.91128 1.11778 1.20094 0.93317 0.94550 1.09714 1.21581 0.99470 0.89831 0.85589 1.22877 0.97877 0.81067 1.01382 0.93469 0.78039 0.91944 0.91318 0.91557 0.90867 0.89950 0.91074 0.79447 0.82364 0.84307 0.83705 0.88872 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -17.10 5.12 -53.31 -0.27 -17.37 16 10 C 0.17 3.13 2.92 -67.81 -0.20 2.94 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 14 C 0.10 1.02 4.93 -3.71 -0.02 1.00 16 15 N -0.60 -8.11 2.97 -173.98 -0.52 -8.63 16 16 C 0.57 7.85 7.27 -12.44 -0.09 7.76 16 17 O -0.54 -9.44 16.32 5.30 0.09 -9.35 16 18 C -0.23 -2.32 5.05 -105.11 -0.53 -2.86 16 19 C 0.20 1.53 10.69 -16.58 -0.18 1.36 16 20 N -0.49 -3.64 5.27 -10.38 -0.05 -3.70 16 21 H 0.43 1.80 8.91 -40.82 -0.36 1.44 16 22 C 0.24 2.74 8.64 -153.92 -1.33 1.41 16 23 N -0.53 -6.82 11.16 -11.09 -0.12 -6.94 16 24 C 0.05 0.60 11.69 -17.74 -0.21 0.39 16 25 C -0.22 -2.41 10.99 -39.27 -0.43 -2.85 16 26 C -0.17 -1.87 6.41 -105.02 -0.67 -2.55 16 27 C 0.06 0.58 7.50 -38.54 -0.29 0.29 16 28 C 0.09 1.60 6.02 -3.71 -0.02 1.57 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 9.71 7.80 -40.82 -0.32 9.39 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.72 4.83 -51.93 -0.25 0.47 16 36 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.19 0.98 8.02 -52.49 -0.42 0.56 16 38 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.21 6.76 -52.48 -0.36 0.85 16 41 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -34.76 346.25 -9.90 -44.66 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.42 Total: 7.87 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.52 Total: -2.18 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.24 Total: -63.34 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.76 -9.90 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999427455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.289 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds