Wall clock time and date at job start Fri Apr 10 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48501 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47039 * 300.00298 * 3 2 1 6 6 H 1.48501 * 109.47211 * 60.00411 * 3 2 1 7 7 C 1.38816 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99988 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49378 * 324.99517 * 10 9 7 12 12 C 1.53045 * 109.52298 * 204.92227 * 10 9 7 13 13 C 1.53044 * 109.53523 * 178.66440 * 12 10 9 14 14 C 1.53191 * 109.31273 * 61.36631 * 13 12 10 15 15 N 1.46924 * 108.77287 * 305.35880 * 14 13 12 16 16 C 1.34776 * 120.63434 * 233.58776 * 15 14 13 17 17 O 1.21579 * 120.00505 * 174.18565 * 16 15 14 18 18 C 1.47606 * 119.99722 * 354.18527 * 16 15 14 19 19 C 1.38566 * 119.74069 * 138.52115 * 18 16 15 20 20 N 1.33776 * 122.05377 * 179.97438 * 19 18 16 21 21 H 0.97006 * 119.62260 * 179.97438 * 20 19 18 22 22 C 1.37226 * 120.74357 * 0.02562 * 20 19 18 23 23 N 1.31991 * 134.47465 * 179.97438 * 22 20 19 24 24 C 1.33412 * 110.93194 * 179.97438 * 23 22 20 25 25 C 1.35786 * 110.89149 * 359.97438 * 24 23 22 26 26 C 1.41376 * 106.44806 * 359.97438 * 25 24 23 27 27 C 1.38761 * 135.64735 * 180.31524 * 26 25 24 28 28 C 1.46927 * 118.73861 * 53.61315 * 15 14 13 29 29 H 0.97001 * 120.00303 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00186 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45877 * 298.68012 * 12 10 9 32 32 H 1.08996 * 109.46156 * 58.64311 * 12 10 9 33 33 H 1.08998 * 109.49616 * 301.40791 * 13 12 10 34 34 H 1.09002 * 109.51931 * 181.32912 * 13 12 10 35 35 H 1.09002 * 109.58372 * 185.57769 * 14 13 12 36 36 H 1.08996 * 109.70929 * 65.22031 * 14 13 12 37 37 H 1.07997 * 118.97398 * 0.02562 * 19 18 16 38 38 H 1.07997 * 124.55416 * 180.02562 * 24 23 22 39 39 H 1.07998 * 126.77391 * 179.97438 * 25 24 23 40 40 H 1.08011 * 120.73390 * 359.89753 * 27 26 25 41 41 H 1.08996 * 109.58899 * 186.60276 * 28 15 14 42 42 H 1.09005 * 109.70072 * 66.24778 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9688 -3.5509 -0.5900 12 6 1.1809 -4.7537 -0.6084 13 6 1.9578 -6.0719 -0.6391 14 6 2.3199 -6.4801 0.7924 15 7 3.0392 -5.3705 1.4328 16 6 4.2428 -5.5717 2.0050 17 8 4.8756 -4.6281 2.4377 18 6 4.7927 -6.9378 2.1064 19 6 6.1364 -7.1586 1.8504 20 7 6.6833 -8.3770 1.9291 21 1 7.6283 -8.4914 1.7421 22 6 5.9223 -9.4667 2.2703 23 7 6.1681 -10.7543 2.4250 24 6 5.0608 -11.4125 2.7722 25 6 4.0034 -10.5658 2.8659 26 6 4.4934 -9.2773 2.5521 27 6 3.9515 -8.0025 2.4704 28 6 2.4214 -4.0375 1.4381 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.2819 -4.8761 -0.0044 32 1 0.9006 -4.4737 -1.6238 33 1 2.8695 -5.9434 -1.2224 34 1 1.3414 -6.8475 -1.0936 35 1 2.9571 -7.3642 0.7702 36 1 1.4112 -6.6986 1.3533 37 1 6.7620 -6.3209 1.5798 38 1 5.0121 -12.4758 2.9550 39 1 2.9885 -10.8254 3.1283 40 1 2.9045 -7.8335 2.6751 41 1 3.1254 -3.3100 1.8419 42 1 1.5199 -4.0527 2.0508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999427455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:46 Heat of formation + Delta-G solvation = 48.393920 kcal Electronic energy + Delta-G solvation = -25651.998243 eV Core-core repulsion = 22018.666838 eV Total energy + Delta-G solvation = -3633.331405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58144 -41.15889 -39.18209 -38.48046 -36.34190 -35.10661 -33.69961 -32.73432 -30.88733 -30.03197 -29.66793 -26.75198 -25.95542 -25.16639 -24.09648 -23.24083 -22.39072 -21.46779 -20.07895 -19.13218 -19.07730 -18.28388 -17.67496 -17.26059 -16.92032 -16.81341 -16.23515 -16.00184 -15.76158 -15.43865 -15.33525 -15.10273 -14.72833 -14.18856 -13.99949 -13.91571 -13.67375 -13.49530 -13.39646 -13.09236 -12.90777 -12.81043 -12.47822 -12.21724 -12.12458 -11.87007 -11.77927 -11.55464 -11.32050 -11.11203 -10.95830 -10.53547 -9.78213 -9.20286 -8.99340 -8.80612 -7.96826 -5.25575 -0.80900 0.04666 1.27964 1.46124 1.47369 1.56865 1.66424 1.96487 2.38644 2.47382 2.55206 3.21706 3.32374 3.37391 3.55242 3.70583 3.76513 4.00415 4.05167 4.10278 4.19742 4.24672 4.35599 4.42033 4.56082 4.61430 4.73685 4.77686 4.88970 4.92124 4.97356 5.01186 5.07835 5.16693 5.28994 5.40528 5.46543 5.47323 5.57971 5.62824 5.83586 6.13761 6.26115 6.40256 7.04710 7.07211 7.32982 8.05992 8.30030 9.26113 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.002926 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.986458 B = 9567.011073 C =10221.718987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.035 0.965 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.595 5.595 16 C 0.571 3.429 17 O -0.581 6.581 18 C -0.242 4.242 19 C 0.228 3.772 20 N -0.473 5.473 21 H 0.444 0.556 22 C 0.225 3.775 23 N -0.560 5.560 24 C 0.027 3.973 25 C -0.224 4.224 26 C -0.191 4.191 27 C 0.075 3.925 28 C 0.108 3.892 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.216 0.784 38 H 0.175 0.825 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 -22.247 1.965 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.058 3.942 11 H 0.053 0.947 12 C -0.157 4.157 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.327 5.327 16 C 0.360 3.640 17 O -0.461 6.461 18 C -0.251 4.251 19 C 0.081 3.919 20 N -0.066 5.066 21 H 0.286 0.714 22 C -0.024 4.024 23 N -0.280 5.280 24 C -0.115 4.115 25 C -0.246 4.246 26 C -0.199 4.199 27 C 0.051 3.949 28 C -0.017 4.017 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.358 -22.275 2.068 24.653 hybrid contribution -0.546 1.678 0.189 1.775 sum 9.813 -20.597 2.257 22.926 Atomic orbital electron populations 1.69792 1.06356 1.26017 1.59364 1.25470 0.96343 1.00785 1.03632 0.85182 0.78208 0.80299 0.76758 1.19499 1.21800 1.22049 1.19561 0.91134 0.85333 1.41133 0.91344 1.42537 1.05560 1.00668 1.88241 1.20654 0.94680 0.85861 0.93045 0.94726 1.21745 0.98573 0.94439 1.00975 1.21859 1.00889 0.96864 0.96312 1.22321 0.97879 0.88541 0.93698 1.48115 1.18753 1.10708 1.55092 1.18088 0.80774 0.87782 0.77328 1.90812 1.59967 1.44678 1.50690 1.18996 0.94393 0.93561 1.18151 1.22484 0.94394 0.86607 0.88418 1.40304 1.13878 1.03551 1.48900 0.71440 1.20685 0.89849 0.88987 1.02839 1.69471 1.31958 1.01822 1.24760 1.22696 0.88111 1.00203 1.00540 1.21687 1.01154 0.90950 1.10777 1.20215 0.93526 0.95036 1.11142 1.21649 1.00089 0.89009 0.84111 1.22268 0.96951 0.82644 0.99851 0.93931 0.79057 0.91363 0.92204 0.91772 0.87501 0.87612 0.88995 0.76709 0.80804 0.82456 0.82151 0.92577 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.95 13.06 21.65 0.28 -57.67 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.23 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.19 9.93 84.04 0.83 -12.36 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -35.48 5.12 -322.58 -1.65 -37.13 16 10 C 0.17 6.22 2.92 45.07 0.13 6.35 16 11 H 0.03 1.40 8.08 -2.38 -0.02 1.38 16 12 C -0.12 -3.29 5.36 30.62 0.16 -3.13 16 13 C -0.12 -2.25 6.08 30.67 0.19 -2.07 16 14 C 0.10 1.66 4.93 86.36 0.43 2.09 16 15 N -0.60 -15.27 2.97 -822.60 -2.44 -17.72 16 16 C 0.57 14.97 7.27 86.72 0.63 15.60 16 17 O -0.58 -20.32 16.32 -3.97 -0.06 -20.38 16 18 C -0.24 -4.36 5.05 -20.18 -0.10 -4.46 16 19 C 0.23 2.84 10.69 84.48 0.90 3.75 16 20 N -0.47 -5.76 5.27 -186.74 -0.98 -6.74 16 21 H 0.44 2.51 8.91 -92.70 -0.83 1.69 16 22 C 0.22 4.58 8.64 135.83 1.17 5.76 16 23 N -0.56 -13.61 11.16 -188.99 -2.11 -15.72 16 24 C 0.03 0.58 11.69 83.88 0.98 1.56 16 25 C -0.22 -4.34 10.99 22.47 0.25 -4.10 16 26 C -0.19 -3.78 6.41 -20.12 -0.13 -3.91 16 27 C 0.08 1.25 7.50 22.94 0.17 1.42 16 28 C 0.11 3.77 6.02 86.36 0.52 4.29 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.38 19.41 7.80 -92.71 -0.72 18.69 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.41 4.83 -2.39 -0.01 1.40 16 36 H 0.09 1.28 8.13 -2.39 -0.02 1.26 16 37 H 0.22 1.53 8.02 -2.91 -0.02 1.51 16 38 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.16 2.10 6.76 -2.90 -0.02 2.08 16 41 H 0.06 2.38 7.00 -2.39 -0.02 2.36 16 42 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -77.72 346.25 1.18 -76.54 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.48 Total: 23.29 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.61 Total: 7.30 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -6.91 Total: -134.99 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -77.72 1.18 -76.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999427455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.932 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds