Wall clock time and date at job start Fri Apr 10 2020 22:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00222 * 2 1 4 4 H 1.48499 * 109.47319 * 240.27858 * 3 2 1 5 5 H 1.48503 * 109.46772 * 0.27221 * 3 2 1 6 6 H 1.48491 * 109.47371 * 120.27621 * 3 2 1 7 7 C 1.38816 * 120.00070 * 180.27691 * 2 1 3 8 8 H 1.08000 * 120.00292 * 179.72213 * 7 2 1 9 9 N 1.36932 * 119.99570 * 359.72075 * 7 2 1 10 10 C 1.46504 * 120.00046 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49369 * 34.93474 * 10 9 7 12 12 C 1.53031 * 109.49937 * 155.00046 * 10 9 7 13 13 C 1.53046 * 109.53912 * 181.31430 * 12 10 9 14 14 C 1.53191 * 109.31241 * 298.64068 * 13 12 10 15 15 N 1.46921 * 108.77845 * 54.63098 * 14 13 12 16 16 C 1.34779 * 120.63225 * 126.41498 * 15 14 13 17 17 O 1.21591 * 119.99630 * 354.15560 * 16 15 14 18 18 C 1.47595 * 120.00171 * 174.15981 * 16 15 14 19 19 C 1.38557 * 119.74115 * 138.52397 * 18 16 15 20 20 N 1.33772 * 122.05338 * 180.02562 * 19 18 16 21 21 H 0.97005 * 119.63094 * 179.97438 * 20 19 18 22 22 C 1.37226 * 120.74291 * 359.95704 * 20 19 18 23 23 N 1.31997 * 134.46893 * 180.02562 * 22 20 19 24 24 C 1.33416 * 110.92832 * 179.97438 * 23 22 20 25 25 C 1.35786 * 110.89206 * 359.97438 * 24 23 22 26 26 C 1.41383 * 106.45344 * 0.02562 * 25 24 23 27 27 C 1.38752 * 135.65657 * 180.30849 * 26 25 24 28 28 C 1.46925 * 118.73894 * 306.39075 * 15 14 13 29 29 H 0.97009 * 120.00044 * 359.72257 * 1 2 3 30 30 H 0.97002 * 120.00417 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46491 * 301.33463 * 12 10 9 32 32 H 1.09002 * 109.45968 * 61.31344 * 12 10 9 33 33 H 1.09009 * 109.49446 * 58.58716 * 13 12 10 34 34 H 1.08995 * 109.50219 * 178.64978 * 13 12 10 35 35 H 1.09005 * 109.58201 * 174.41983 * 14 13 12 36 36 H 1.08999 * 109.58425 * 294.83715 * 14 13 12 37 37 H 1.08003 * 118.97768 * 359.97438 * 19 18 16 38 38 H 1.07999 * 124.54942 * 180.02562 * 24 23 22 39 39 H 1.08000 * 126.77300 * 180.02562 * 25 24 23 40 40 H 1.08006 * 120.73327 * 359.90025 * 27 26 25 41 41 H 1.08996 * 109.58652 * 293.82175 * 28 15 14 42 42 H 1.08995 * 109.58612 * 173.39715 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6994 -1.2159 5 1 1.2852 2.7464 0.0067 6 1 3.1090 1.6935 1.2090 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3255 -2.3880 -0.0058 10 6 2.0579 -3.6568 -0.0113 11 1 2.9716 -3.5519 0.5738 12 6 1.1834 -4.7541 0.5993 13 6 1.9596 -6.0729 0.6239 14 6 2.3142 -6.4790 -0.8100 15 7 3.0308 -5.3688 -1.4524 16 6 4.2313 -5.5698 -2.0312 17 8 4.7800 -6.6504 -1.9333 18 6 4.8798 -4.4782 -2.7837 19 6 6.2424 -4.2658 -2.6493 20 7 6.8772 -3.2902 -3.3087 21 1 7.8326 -3.1727 -3.1881 22 6 6.1923 -2.4539 -4.1540 23 7 6.5306 -1.4328 -4.9190 24 6 5.4677 -0.9467 -5.5624 25 6 4.3474 -1.6445 -5.2431 26 6 4.7462 -2.6447 -4.3269 27 6 4.1120 -3.6670 -3.6357 28 6 2.4136 -4.0355 -1.4525 29 1 -0.4851 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0020 31 1 0.9085 -4.4755 1.6166 32 1 0.2813 -4.8753 -0.0004 33 1 2.8745 -5.9457 1.2028 34 1 1.3450 -6.8484 1.0808 35 1 2.9510 -7.3635 -0.7924 36 1 1.4012 -6.6945 -1.3650 37 1 6.8096 -4.9073 -1.9912 38 1 5.4949 -0.1109 -6.2459 39 1 3.3488 -1.4698 -5.6156 40 1 3.0505 -3.8329 -3.7470 41 1 1.5087 -4.0517 -2.0599 42 1 3.1159 -3.3078 -1.8589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999427456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:49 Heat of formation + Delta-G solvation = 71.003749 kcal Electronic energy + Delta-G solvation = -26370.719302 eV Core-core repulsion = 22738.368333 eV Total energy + Delta-G solvation = -3632.350969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53810 -40.02068 -38.09993 -37.28816 -34.43700 -34.24731 -32.28867 -31.29909 -29.67265 -28.78097 -28.27795 -25.53734 -24.45274 -23.91581 -23.17610 -21.84780 -21.11880 -20.31682 -18.91033 -18.03647 -17.27389 -17.15633 -16.65555 -16.19370 -15.82867 -15.34854 -14.95463 -14.79139 -14.53380 -14.10693 -13.93443 -13.57110 -13.46711 -13.07301 -12.77304 -12.58983 -12.47506 -12.35613 -12.30256 -11.79321 -11.43517 -11.12896 -10.91820 -10.82847 -10.61618 -10.54787 -10.33575 -10.12548 -9.76205 -9.75263 -9.43486 -9.15455 -8.50698 -8.12250 -7.70403 -7.09550 -5.86975 -3.17556 0.19980 1.06586 2.21819 2.74020 3.07976 3.40180 3.44973 3.46677 3.50383 3.56469 4.14813 4.34939 4.44927 4.53366 4.73672 4.99724 5.09167 5.12077 5.12907 5.23833 5.37152 5.52370 5.59784 5.60372 5.72400 5.80633 5.82697 5.93667 5.98609 6.02176 6.02881 6.19556 6.25246 6.25702 6.37910 6.52332 6.60915 6.67082 6.83072 6.86997 7.17737 7.47310 7.60706 8.11357 8.15023 8.30786 9.43090 9.95972 10.31062 11.34801 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.008396 B = 0.006646 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.002788 B = 4211.793585 C = 6894.108362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.005 4.005 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.129 4.129 14 C 0.113 3.887 15 N -0.597 5.597 16 C 0.577 3.423 17 O -0.553 6.553 18 C -0.230 4.230 19 C 0.197 3.803 20 N -0.491 5.491 21 H 0.426 0.574 22 C 0.244 3.756 23 N -0.532 5.532 24 C 0.050 3.950 25 C -0.215 4.215 26 C -0.164 4.164 27 C 0.067 3.933 28 C 0.077 3.923 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.185 0.815 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.068 0.932 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -12.095 -4.583 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.009 4.009 15 N -0.329 5.329 16 C 0.365 3.635 17 O -0.433 6.433 18 C -0.240 4.240 19 C 0.053 3.947 20 N -0.084 5.084 21 H 0.264 0.736 22 C -0.005 4.005 23 N -0.252 5.252 24 C -0.092 4.092 25 C -0.238 4.238 26 C -0.172 4.172 27 C 0.043 3.957 28 C -0.048 4.048 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.603 -11.949 -4.728 16.042 hybrid contribution -0.430 0.969 0.092 1.064 sum 9.173 -10.980 -4.636 15.039 Atomic orbital electron populations 1.69639 1.05108 1.26027 1.56842 1.24715 0.95455 0.97678 1.02285 0.86342 0.78726 0.83573 0.78061 1.20938 1.21521 1.21232 1.19135 0.90868 0.83964 1.43903 0.91341 1.42370 1.05847 0.99443 1.88080 1.20469 0.95184 0.86649 0.91963 0.93070 1.21839 0.98694 0.94109 1.01891 1.21876 1.00853 0.98037 0.95998 1.21625 0.96493 0.89632 0.93170 1.48142 1.18860 1.11295 1.54570 1.17694 0.80894 0.86530 0.78430 1.90757 1.64059 1.26110 1.62334 1.19146 0.92864 1.04041 1.07936 1.21980 0.93578 0.87506 0.91682 1.40196 1.12594 1.23152 1.32495 0.73612 1.20454 0.89534 0.94579 0.95936 1.69499 1.32667 1.10356 1.12638 1.22305 0.88169 0.99530 0.99242 1.21446 1.00156 0.99030 1.03131 1.20067 0.92798 1.00452 1.03861 1.21569 0.99739 0.87710 0.86657 1.23271 0.98093 0.81095 1.02364 0.93281 0.77957 0.91333 0.91958 0.91602 0.90929 0.89191 0.91445 0.79784 0.82382 0.84196 0.83726 0.91405 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.49 5.12 -53.31 -0.27 -16.76 16 10 C 0.17 3.01 2.92 -67.81 -0.20 2.82 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.13 -1.85 5.35 -26.69 -0.14 -2.00 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 14 C 0.11 1.36 6.44 -3.71 -0.02 1.33 16 15 N -0.60 -8.21 2.97 -173.98 -0.52 -8.73 16 16 C 0.58 8.12 7.27 -12.44 -0.09 8.03 16 17 O -0.55 -8.74 16.32 5.29 0.09 -8.65 16 18 C -0.23 -2.98 5.06 -105.12 -0.53 -3.51 16 19 C 0.20 1.99 10.69 -16.59 -0.18 1.81 16 20 N -0.49 -5.14 5.27 -10.38 -0.05 -5.19 16 21 H 0.43 2.92 8.91 -40.82 -0.36 2.56 16 22 C 0.24 3.67 8.64 -153.91 -1.33 2.34 16 23 N -0.53 -8.88 11.17 -11.08 -0.12 -9.00 16 24 C 0.05 0.79 11.69 -17.74 -0.21 0.58 16 25 C -0.22 -3.40 10.99 -39.26 -0.43 -3.83 16 26 C -0.16 -2.58 6.41 -105.01 -0.67 -3.25 16 27 C 0.07 0.94 7.50 -38.55 -0.29 0.65 16 28 C 0.08 1.21 4.51 -3.71 -0.02 1.19 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 9.48 7.80 -40.82 -0.32 9.16 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.19 1.23 8.02 -52.48 -0.42 0.81 16 38 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.15 1.92 6.76 -52.48 -0.35 1.56 16 41 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 42 H 0.09 1.50 4.82 -51.93 -0.25 1.25 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -33.70 346.25 -9.90 -43.60 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.42 Total: 11.05 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -4.52 Total: -2.38 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.24 Total: -65.87 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.70 -9.90 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999427456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.605 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds