Wall clock time and date at job start Fri Apr 10 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00222 * 2 1 4 4 H 1.48499 * 109.47319 * 240.27858 * 3 2 1 5 5 H 1.48503 * 109.46772 * 0.27221 * 3 2 1 6 6 H 1.48491 * 109.47371 * 120.27621 * 3 2 1 7 7 C 1.38816 * 120.00070 * 180.27691 * 2 1 3 8 8 H 1.08000 * 120.00292 * 179.72213 * 7 2 1 9 9 N 1.36932 * 119.99570 * 359.72075 * 7 2 1 10 10 C 1.46504 * 120.00046 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49369 * 34.93474 * 10 9 7 12 12 C 1.53031 * 109.49937 * 155.00046 * 10 9 7 13 13 C 1.53046 * 109.53912 * 181.31430 * 12 10 9 14 14 C 1.53191 * 109.31241 * 298.64068 * 13 12 10 15 15 N 1.46921 * 108.77845 * 54.63098 * 14 13 12 16 16 C 1.34779 * 120.63225 * 126.41498 * 15 14 13 17 17 O 1.21591 * 119.99630 * 354.15560 * 16 15 14 18 18 C 1.47595 * 120.00171 * 174.15981 * 16 15 14 19 19 C 1.38557 * 119.74115 * 138.52397 * 18 16 15 20 20 N 1.33772 * 122.05338 * 180.02562 * 19 18 16 21 21 H 0.97005 * 119.63094 * 179.97438 * 20 19 18 22 22 C 1.37226 * 120.74291 * 359.95704 * 20 19 18 23 23 N 1.31997 * 134.46893 * 180.02562 * 22 20 19 24 24 C 1.33416 * 110.92832 * 179.97438 * 23 22 20 25 25 C 1.35786 * 110.89206 * 359.97438 * 24 23 22 26 26 C 1.41383 * 106.45344 * 0.02562 * 25 24 23 27 27 C 1.38752 * 135.65657 * 180.30849 * 26 25 24 28 28 C 1.46925 * 118.73894 * 306.39075 * 15 14 13 29 29 H 0.97009 * 120.00044 * 359.72257 * 1 2 3 30 30 H 0.97002 * 120.00417 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46491 * 301.33463 * 12 10 9 32 32 H 1.09002 * 109.45968 * 61.31344 * 12 10 9 33 33 H 1.09009 * 109.49446 * 58.58716 * 13 12 10 34 34 H 1.08995 * 109.50219 * 178.64978 * 13 12 10 35 35 H 1.09005 * 109.58201 * 174.41983 * 14 13 12 36 36 H 1.08999 * 109.58425 * 294.83715 * 14 13 12 37 37 H 1.08003 * 118.97768 * 359.97438 * 19 18 16 38 38 H 1.07999 * 124.54942 * 180.02562 * 24 23 22 39 39 H 1.08000 * 126.77300 * 180.02562 * 25 24 23 40 40 H 1.08006 * 120.73327 * 359.90025 * 27 26 25 41 41 H 1.08996 * 109.58652 * 293.82175 * 28 15 14 42 42 H 1.08995 * 109.58612 * 173.39715 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6994 -1.2159 5 1 1.2852 2.7464 0.0067 6 1 3.1090 1.6935 1.2090 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3255 -2.3880 -0.0058 10 6 2.0579 -3.6568 -0.0113 11 1 2.9716 -3.5519 0.5738 12 6 1.1834 -4.7541 0.5993 13 6 1.9596 -6.0729 0.6239 14 6 2.3142 -6.4790 -0.8100 15 7 3.0308 -5.3688 -1.4524 16 6 4.2313 -5.5698 -2.0312 17 8 4.7800 -6.6504 -1.9333 18 6 4.8798 -4.4782 -2.7837 19 6 6.2424 -4.2658 -2.6493 20 7 6.8772 -3.2902 -3.3087 21 1 7.8326 -3.1727 -3.1881 22 6 6.1923 -2.4539 -4.1540 23 7 6.5306 -1.4328 -4.9190 24 6 5.4677 -0.9467 -5.5624 25 6 4.3474 -1.6445 -5.2431 26 6 4.7462 -2.6447 -4.3269 27 6 4.1120 -3.6670 -3.6357 28 6 2.4136 -4.0355 -1.4525 29 1 -0.4851 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0020 31 1 0.9085 -4.4755 1.6166 32 1 0.2813 -4.8753 -0.0004 33 1 2.8745 -5.9457 1.2028 34 1 1.3450 -6.8484 1.0808 35 1 2.9510 -7.3635 -0.7924 36 1 1.4012 -6.6945 -1.3650 37 1 6.8096 -4.9073 -1.9912 38 1 5.4949 -0.1109 -6.2459 39 1 3.3488 -1.4698 -5.6156 40 1 3.0505 -3.8329 -3.7470 41 1 1.5087 -4.0517 -2.0599 42 1 3.1159 -3.3078 -1.8589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999427456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:48 Heat of formation + Delta-G solvation = 49.217202 kcal Electronic energy + Delta-G solvation = -26371.664038 eV Core-core repulsion = 22738.368333 eV Total energy + Delta-G solvation = -3633.295705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.59425 -41.16557 -39.18522 -38.51870 -36.03725 -35.37048 -33.69543 -32.81318 -30.75222 -29.97655 -29.77594 -26.67987 -25.96233 -25.26310 -24.31705 -23.06339 -22.28556 -21.56654 -20.09623 -19.14668 -19.06482 -18.31213 -17.69541 -17.27857 -16.94089 -16.78898 -16.25146 -15.95299 -15.82508 -15.51172 -15.33391 -15.05821 -14.79852 -14.16690 -14.02093 -13.89246 -13.66099 -13.45085 -13.42700 -13.11736 -12.89178 -12.84664 -12.47615 -12.29974 -12.04138 -11.95169 -11.68854 -11.56524 -11.41716 -11.14831 -10.88570 -10.60324 -9.77490 -9.21306 -8.98674 -8.84107 -7.96425 -5.24146 -0.82712 0.04468 1.28118 1.44381 1.47281 1.51527 1.62388 1.97488 2.35137 2.46054 2.53671 3.18644 3.27312 3.38027 3.53234 3.69429 3.84639 3.94215 4.03601 4.09010 4.20034 4.23363 4.40980 4.42158 4.55155 4.63549 4.70801 4.74872 4.89029 4.92014 4.94424 4.97295 5.06425 5.15663 5.26217 5.39801 5.46250 5.49478 5.57262 5.63567 5.78858 6.09159 6.24572 6.33584 6.98767 7.03453 7.34078 8.07191 8.30611 9.26160 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.008396 B = 0.006646 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.002788 B = 4211.793585 C = 6894.108362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.062 4.062 3 Si 0.955 3.045 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.165 3.835 11 H 0.039 0.961 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.110 3.890 15 N -0.595 5.595 16 C 0.583 3.417 17 O -0.566 6.566 18 C -0.253 4.253 19 C 0.231 3.769 20 N -0.472 5.472 21 H 0.446 0.554 22 C 0.228 3.772 23 N -0.555 5.555 24 C 0.027 3.973 25 C -0.233 4.233 26 C -0.200 4.200 27 C 0.074 3.926 28 C 0.095 3.905 29 H 0.251 0.749 30 H 0.377 0.623 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -14.177 -3.796 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.255 4.255 3 Si 0.785 3.215 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.367 5.367 10 C 0.055 3.945 11 H 0.057 0.943 12 C -0.158 4.158 13 C -0.156 4.156 14 C -0.012 4.012 15 N -0.327 5.327 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.262 4.262 19 C 0.084 3.916 20 N -0.066 5.066 21 H 0.288 0.712 22 C -0.021 4.021 23 N -0.275 5.275 24 C -0.115 4.115 25 C -0.255 4.255 26 C -0.208 4.208 27 C 0.050 3.950 28 C -0.031 4.031 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.192 0.808 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.048 -14.067 -3.942 18.317 hybrid contribution -0.803 1.426 -0.078 1.638 sum 10.245 -12.642 -4.021 16.761 Atomic orbital electron populations 1.69758 1.06205 1.26020 1.59225 1.25328 0.96133 1.00318 1.03750 0.85491 0.77513 0.80589 0.77884 1.21267 1.22004 1.20554 1.19414 0.91033 0.85176 1.41201 0.91273 1.42500 1.05544 1.00454 1.88234 1.20667 0.94855 0.85710 0.93258 0.94264 1.21754 0.98626 0.94428 1.01034 1.21817 1.00714 0.96963 0.96112 1.21815 0.97091 0.89004 0.93246 1.48096 1.18967 1.10802 1.54803 1.17697 0.80641 0.86401 0.78107 1.90758 1.64283 1.26603 1.63038 1.19206 0.94144 1.04281 1.08537 1.22656 0.92956 0.86177 0.89782 1.40278 1.13528 1.21948 1.30878 0.71238 1.20612 0.89851 0.94970 0.96637 1.69450 1.33166 1.11332 1.13571 1.22631 0.88202 1.00501 1.00170 1.21674 1.00584 0.99584 1.03688 1.20236 0.93699 1.01572 1.05288 1.21640 0.99947 0.87156 0.86216 1.22773 0.97911 0.82033 1.00343 0.93970 0.79046 0.92220 0.91477 0.91935 0.87960 0.88570 0.89904 0.75321 0.80769 0.83647 0.83691 0.91398 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.64 13.06 21.65 0.28 -56.36 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.96 45.82 29.55 68.60 2.03 47.85 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.24 -12.42 9.93 84.04 0.83 -11.58 16 8 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.73 -33.45 5.12 -322.57 -1.65 -35.10 16 10 C 0.16 5.71 2.92 45.07 0.13 5.85 16 11 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 12 C -0.12 -3.29 5.35 30.62 0.16 -3.12 16 13 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 14 C 0.11 2.28 6.44 86.36 0.56 2.83 16 15 N -0.60 -14.97 2.97 -822.60 -2.44 -17.41 16 16 C 0.58 14.83 7.27 86.71 0.63 15.46 16 17 O -0.57 -16.02 16.32 -4.00 -0.07 -16.08 16 18 C -0.25 -5.96 5.06 -20.18 -0.10 -6.07 16 19 C 0.23 3.87 10.69 84.47 0.90 4.77 16 20 N -0.47 -8.66 5.27 -186.74 -0.98 -9.65 16 21 H 0.45 4.71 8.91 -92.70 -0.83 3.89 16 22 C 0.23 6.67 8.64 135.83 1.17 7.85 16 23 N -0.56 -18.53 11.17 -188.98 -2.11 -20.64 16 24 C 0.03 0.89 11.69 83.88 0.98 1.87 16 25 C -0.23 -7.58 10.99 22.48 0.25 -7.33 16 26 C -0.20 -6.30 6.41 -20.12 -0.13 -6.43 16 27 C 0.07 2.04 7.50 22.94 0.17 2.21 16 28 C 0.09 2.86 4.51 86.36 0.39 3.25 16 29 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 30 H 0.38 18.67 7.80 -92.71 -0.72 17.94 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.97 7.00 -2.38 -0.02 1.95 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.23 1.82 8.02 -2.91 -0.02 1.80 16 38 H 0.18 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.15 3.82 6.76 -2.91 -0.02 3.80 16 41 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 42 H 0.08 2.51 4.82 -2.39 -0.01 2.50 16 Total: -1.00 -73.52 346.25 1.18 -72.34 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.48 Total: 30.67 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.60 Total: 4.38 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -6.91 Total: -139.16 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.07 Total: -16.08 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.52 1.18 -72.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999427456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.557 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds