Wall clock time and date at job start Fri Apr 10 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48493 * 109.47310 * 240.00413 * 3 2 1 5 5 H 1.48503 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46724 * 120.00205 * 3 2 1 7 7 C 1.38813 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00085 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.50093 * 324.99761 * 10 9 7 12 12 C 1.53049 * 109.52244 * 204.91604 * 10 9 7 13 13 C 1.53034 * 109.53666 * 178.66611 * 12 10 9 14 14 C 1.53199 * 109.31298 * 61.36855 * 13 12 10 15 15 N 1.46922 * 108.77538 * 305.36452 * 14 13 12 16 16 C 1.34775 * 120.63295 * 233.58722 * 15 14 13 17 17 O 1.21545 * 120.00193 * 172.82421 * 16 15 14 18 18 C 1.47958 * 119.99797 * 352.82377 * 16 15 14 19 19 C 1.39786 * 119.31970 * 164.72438 * 18 16 15 20 20 C 1.37011 * 119.45510 * 179.97438 * 19 18 16 21 21 C 1.39772 * 118.24081 * 359.97438 * 20 19 18 22 22 C 1.46143 * 134.24926 * 180.02562 * 21 20 19 23 23 C 1.34428 * 106.92101 * 180.02562 * 22 21 20 24 24 N 1.36724 * 110.00583 * 359.97438 * 23 22 21 25 25 H 0.97002 * 124.99763 * 179.97438 * 24 23 22 26 26 C 1.37558 * 110.00294 * 0.02562 * 24 23 22 27 27 N 1.32167 * 133.20781 * 180.29943 * 26 24 23 28 28 C 1.46927 * 118.74140 * 53.60353 * 15 14 13 29 29 H 0.96997 * 119.99871 * 359.97438 * 1 2 3 30 30 H 0.97009 * 119.99672 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.46395 * 298.69155 * 12 10 9 32 32 H 1.09001 * 109.45855 * 58.64978 * 12 10 9 33 33 H 1.08996 * 109.50321 * 301.41586 * 13 12 10 34 34 H 1.09000 * 109.52482 * 181.33238 * 13 12 10 35 35 H 1.08997 * 109.58705 * 185.57444 * 14 13 12 36 36 H 1.09007 * 109.58352 * 65.15168 * 14 13 12 37 37 H 1.08002 * 120.27344 * 359.97438 * 19 18 16 38 38 H 1.08005 * 120.88285 * 179.97438 * 20 19 18 39 39 H 1.07999 * 126.53999 * 359.97438 * 22 21 20 40 40 H 1.08005 * 125.00108 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.59002 * 186.60601 * 28 15 14 42 42 H 1.09008 * 109.69989 * 66.24771 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9684 -3.5508 -0.5917 12 6 1.1804 -4.7536 -0.6092 13 6 1.9573 -6.0717 -0.6411 14 6 2.3205 -6.4804 0.7900 15 7 3.0403 -5.3711 1.4304 16 6 4.2443 -5.5725 2.0016 17 8 4.8882 -4.6268 2.4118 18 6 4.7822 -6.9449 2.1292 19 6 6.1381 -7.1246 2.4180 20 6 6.6391 -8.3942 2.5374 21 6 5.7634 -9.4697 2.3640 22 6 5.9112 -10.9229 2.4112 23 6 4.6993 -11.4478 2.1601 24 7 3.7894 -10.4477 1.9569 25 1 2.8494 -10.5826 1.7589 26 6 4.4033 -9.2222 2.0734 27 7 3.9673 -7.9786 1.9729 28 6 2.4225 -4.0381 1.4366 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 0.2818 -4.8761 -0.0047 32 1 0.8994 -4.4731 -1.6243 33 1 2.8686 -5.9430 -1.2250 34 1 1.3405 -6.8471 -1.0954 35 1 2.9576 -7.3645 0.7670 36 1 1.4109 -6.6975 1.3501 37 1 6.7855 -6.2696 2.5460 38 1 7.6830 -8.5597 2.7596 39 1 6.8206 -11.4707 2.6092 40 1 4.4771 -12.5041 2.1242 41 1 3.1268 -3.3107 1.8402 42 1 1.5215 -4.0535 2.0500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999428752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:51 Heat of formation + Delta-G solvation = 70.290757 kcal Electronic energy + Delta-G solvation = -25721.036255 eV Core-core repulsion = 22088.654368 eV Total energy + Delta-G solvation = -3632.381887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89968 -39.97502 -37.91083 -37.03967 -34.48785 -33.35219 -32.15061 -31.08855 -30.41638 -29.78015 -28.06798 -25.66408 -24.00588 -23.94346 -22.88515 -21.76823 -21.17405 -20.39880 -19.13504 -18.74970 -17.23369 -17.02270 -16.64144 -15.83558 -15.59912 -15.05607 -14.83536 -14.63082 -14.37750 -14.14710 -13.70815 -13.62362 -13.41306 -13.39839 -13.23080 -12.68678 -12.47190 -12.35160 -12.20097 -12.04938 -11.31368 -10.99981 -10.79689 -10.76718 -10.58979 -10.50573 -10.19194 -10.06649 -9.76297 -9.66251 -9.06971 -8.99103 -8.77500 -8.41687 -8.20818 -6.94806 -5.74069 -3.03559 0.40277 1.06077 2.22998 2.36041 2.91419 3.23666 3.49612 3.52883 3.55224 3.76599 4.09696 4.33293 4.40697 4.62629 4.67592 4.89299 4.96107 5.19236 5.27185 5.32722 5.39946 5.44832 5.50558 5.55774 5.73983 5.88576 5.92492 6.01545 6.03267 6.14060 6.15865 6.21662 6.25755 6.33373 6.44611 6.56895 6.62847 6.79945 6.88979 6.92506 7.10378 7.53803 7.75316 7.76342 8.38244 8.44751 9.55914 10.10431 10.46017 11.48281 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.003000 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.507420 B = 9331.018669 C =10144.203435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.132 4.132 14 C 0.085 3.915 15 N -0.582 5.582 16 C 0.564 3.436 17 O -0.532 6.532 18 C 0.128 3.872 19 C -0.141 4.141 20 C -0.036 4.036 21 C -0.137 4.137 22 C -0.201 4.201 23 C 0.070 3.930 24 N -0.580 5.580 25 H 0.422 0.578 26 C 0.273 3.727 27 N -0.458 5.458 28 C 0.090 3.910 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.180 0.820 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -27.695 3.369 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.171 4.171 14 C -0.037 4.037 15 N -0.314 5.314 16 C 0.349 3.651 17 O -0.409 6.409 18 C -0.018 4.018 19 C -0.163 4.163 20 C -0.063 4.063 21 C -0.144 4.144 22 C -0.226 4.226 23 C -0.057 4.057 24 N -0.187 5.187 25 H 0.260 0.740 26 C 0.039 3.961 27 N -0.174 5.174 28 C -0.034 4.034 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.514 -26.916 3.367 28.431 hybrid contribution 0.321 0.642 0.110 0.727 sum 8.835 -26.274 3.477 27.937 Atomic orbital electron populations 1.69653 1.05122 1.25819 1.57589 1.24743 0.95512 0.97730 1.02766 0.86259 0.78539 0.83384 0.78003 1.21227 1.21722 1.21090 1.19247 0.91111 0.83991 1.42887 0.91047 1.42376 1.05786 0.99591 1.88124 1.20477 0.94918 0.86405 0.92371 0.93116 1.21835 0.98696 0.94345 1.01578 1.21945 1.00469 0.97853 0.96822 1.22659 0.98051 0.90894 0.92135 1.48105 1.17875 1.11449 1.53955 1.17843 0.81530 0.86561 0.79146 1.90807 1.58181 1.41644 1.50251 1.21020 0.90974 0.91483 0.98368 1.21563 0.95332 0.98429 1.01003 1.20690 0.99647 0.90348 0.95573 1.20074 0.93924 0.94895 1.05489 1.21674 0.98146 0.91251 1.11568 1.21954 0.88709 0.93461 1.01601 1.41558 1.11813 1.02696 1.62625 0.74039 1.18506 0.89733 0.86371 1.01468 1.66632 1.37787 0.96719 1.16309 1.22846 0.97824 0.81524 1.01237 0.93460 0.78096 0.92149 0.91643 0.92029 0.91397 0.85556 0.92048 0.83160 0.84102 0.83015 0.80341 0.89060 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.89 9.93 -15.06 -0.15 -7.04 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.72 -18.39 5.13 -53.31 -0.27 -18.67 16 10 C 0.17 3.54 2.92 -67.81 -0.20 3.35 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.14 5.36 -26.69 -0.14 -2.28 16 13 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 14 C 0.09 1.20 5.82 -3.71 -0.02 1.18 16 15 N -0.58 -10.06 2.97 -173.83 -0.52 -10.58 16 16 C 0.56 10.00 7.62 -12.28 -0.09 9.91 16 17 O -0.53 -11.07 15.81 5.33 0.08 -10.99 16 18 C 0.13 1.85 6.48 -82.99 -0.54 1.31 16 19 C -0.14 -1.73 9.55 -39.45 -0.38 -2.11 16 20 C -0.04 -0.36 10.17 -39.45 -0.40 -0.76 16 21 C -0.14 -1.36 6.39 -105.00 -0.67 -2.04 16 22 C -0.20 -1.38 11.08 -37.76 -0.42 -1.80 16 23 C 0.07 0.36 11.81 -16.72 -0.20 0.16 16 24 N -0.58 -4.09 6.05 -12.09 -0.07 -4.16 16 25 H 0.42 1.96 8.96 -40.82 -0.37 1.60 16 26 C 0.27 2.96 8.43 -155.79 -1.31 1.65 16 27 N -0.46 -5.92 6.32 -8.82 -0.06 -5.97 16 28 C 0.09 1.81 6.03 -3.71 -0.02 1.79 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.33 7.80 -40.82 -0.32 10.01 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.13 1.67 4.22 -73.32 -0.31 1.36 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.15 1.78 7.69 -52.49 -0.40 1.37 16 38 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.18 0.20 8.06 -52.48 -0.42 -0.22 16 41 H 0.09 2.10 7.00 -51.93 -0.36 1.73 16 42 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -34.72 346.27 -10.25 -44.97 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.53 Total: 9.04 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -4.80 Total: 0.92 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.19 Total: -67.19 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.72 -10.25 -44.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999428752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.258 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds