Wall clock time and date at job start Fri Apr 10 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48493 * 109.47310 * 240.00413 * 3 2 1 5 5 H 1.48503 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46724 * 120.00205 * 3 2 1 7 7 C 1.38813 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00085 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.50093 * 324.99761 * 10 9 7 12 12 C 1.53049 * 109.52244 * 204.91604 * 10 9 7 13 13 C 1.53034 * 109.53666 * 178.66611 * 12 10 9 14 14 C 1.53199 * 109.31298 * 61.36855 * 13 12 10 15 15 N 1.46922 * 108.77538 * 305.36452 * 14 13 12 16 16 C 1.34775 * 120.63295 * 233.58722 * 15 14 13 17 17 O 1.21545 * 120.00193 * 172.82421 * 16 15 14 18 18 C 1.47958 * 119.99797 * 352.82377 * 16 15 14 19 19 C 1.39786 * 119.31970 * 164.72438 * 18 16 15 20 20 C 1.37011 * 119.45510 * 179.97438 * 19 18 16 21 21 C 1.39772 * 118.24081 * 359.97438 * 20 19 18 22 22 C 1.46143 * 134.24926 * 180.02562 * 21 20 19 23 23 C 1.34428 * 106.92101 * 180.02562 * 22 21 20 24 24 N 1.36724 * 110.00583 * 359.97438 * 23 22 21 25 25 H 0.97002 * 124.99763 * 179.97438 * 24 23 22 26 26 C 1.37558 * 110.00294 * 0.02562 * 24 23 22 27 27 N 1.32167 * 133.20781 * 180.29943 * 26 24 23 28 28 C 1.46927 * 118.74140 * 53.60353 * 15 14 13 29 29 H 0.96997 * 119.99871 * 359.97438 * 1 2 3 30 30 H 0.97009 * 119.99672 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.46395 * 298.69155 * 12 10 9 32 32 H 1.09001 * 109.45855 * 58.64978 * 12 10 9 33 33 H 1.08996 * 109.50321 * 301.41586 * 13 12 10 34 34 H 1.09000 * 109.52482 * 181.33238 * 13 12 10 35 35 H 1.08997 * 109.58705 * 185.57444 * 14 13 12 36 36 H 1.09007 * 109.58352 * 65.15168 * 14 13 12 37 37 H 1.08002 * 120.27344 * 359.97438 * 19 18 16 38 38 H 1.08005 * 120.88285 * 179.97438 * 20 19 18 39 39 H 1.07999 * 126.53999 * 359.97438 * 22 21 20 40 40 H 1.08005 * 125.00108 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.59002 * 186.60601 * 28 15 14 42 42 H 1.09008 * 109.69989 * 66.24771 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9684 -3.5508 -0.5917 12 6 1.1804 -4.7536 -0.6092 13 6 1.9573 -6.0717 -0.6411 14 6 2.3205 -6.4804 0.7900 15 7 3.0403 -5.3711 1.4304 16 6 4.2443 -5.5725 2.0016 17 8 4.8882 -4.6268 2.4118 18 6 4.7822 -6.9449 2.1292 19 6 6.1381 -7.1246 2.4180 20 6 6.6391 -8.3942 2.5374 21 6 5.7634 -9.4697 2.3640 22 6 5.9112 -10.9229 2.4112 23 6 4.6993 -11.4478 2.1601 24 7 3.7894 -10.4477 1.9569 25 1 2.8494 -10.5826 1.7589 26 6 4.4033 -9.2222 2.0734 27 7 3.9673 -7.9786 1.9729 28 6 2.4225 -4.0381 1.4366 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 0.2818 -4.8761 -0.0047 32 1 0.8994 -4.4731 -1.6243 33 1 2.8686 -5.9430 -1.2250 34 1 1.3405 -6.8471 -1.0954 35 1 2.9576 -7.3645 0.7670 36 1 1.4109 -6.6975 1.3501 37 1 6.7855 -6.2696 2.5460 38 1 7.6830 -8.5597 2.7596 39 1 6.8206 -11.4707 2.6092 40 1 4.4771 -12.5041 2.1242 41 1 3.1268 -3.3107 1.8402 42 1 1.5215 -4.0535 2.0500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999428752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:51 Heat of formation + Delta-G solvation = 47.377738 kcal Electronic energy + Delta-G solvation = -25722.029838 eV Core-core repulsion = 22088.654368 eV Total energy + Delta-G solvation = -3633.375470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.64724 -41.22446 -39.03580 -38.31964 -36.26150 -34.37784 -33.67764 -32.77734 -31.21228 -30.70124 -29.68202 -26.90674 -25.89669 -24.95045 -23.87741 -23.25460 -21.96540 -21.59316 -20.45586 -19.49096 -19.15746 -18.40164 -17.43772 -17.06718 -16.91539 -16.44684 -16.03981 -15.83600 -15.61366 -15.47468 -15.27997 -15.10592 -14.51273 -14.35097 -14.08100 -14.05196 -13.95066 -13.59917 -13.25429 -13.01636 -12.99977 -12.87692 -12.53716 -12.26102 -12.07402 -11.93409 -11.77196 -11.50316 -11.41920 -11.37639 -11.09110 -10.07196 -9.83023 -9.52982 -9.05255 -8.96938 -7.99441 -5.29201 -0.47134 0.24744 1.43525 1.46940 1.51033 1.53112 1.68047 1.88912 1.99703 2.52991 2.81232 3.17473 3.33252 3.60364 3.74181 3.80728 3.88291 3.97837 4.06961 4.10330 4.23661 4.34449 4.38140 4.39358 4.66225 4.70456 4.72209 4.75322 4.84600 4.90323 5.01702 5.05509 5.14173 5.18577 5.33887 5.41270 5.42180 5.46459 5.52547 5.60084 5.94669 6.21177 6.23465 6.41373 6.79923 7.04470 7.29413 8.00335 8.27113 9.23097 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.003000 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.507420 B = 9331.018669 C =10144.203435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.117 4.117 13 C -0.122 4.122 14 C 0.086 3.914 15 N -0.585 5.585 16 C 0.558 3.442 17 O -0.578 6.578 18 C 0.096 3.904 19 C -0.151 4.151 20 C -0.033 4.033 21 C -0.140 4.140 22 C -0.218 4.218 23 C 0.099 3.901 24 N -0.572 5.572 25 H 0.434 0.566 26 C 0.249 3.751 27 N -0.463 5.463 28 C 0.105 3.895 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.072 0.928 37 H 0.143 0.857 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.229 0.771 41 H 0.053 0.947 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -32.008 3.134 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.155 4.155 13 C -0.160 4.160 14 C -0.035 4.035 15 N -0.316 5.316 16 C 0.346 3.654 17 O -0.458 6.458 18 C -0.049 4.049 19 C -0.174 4.174 20 C -0.059 4.059 21 C -0.147 4.147 22 C -0.242 4.242 23 C -0.028 4.028 24 N -0.180 5.180 25 H 0.274 0.726 26 C 0.013 3.987 27 N -0.180 5.180 28 C -0.021 4.021 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.160 0.840 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.190 0.810 39 H 0.195 0.805 40 H 0.245 0.755 41 H 0.072 0.928 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.137 -31.290 3.116 32.745 hybrid contribution 0.167 1.685 0.217 1.707 sum 9.304 -29.604 3.334 31.210 Atomic orbital electron populations 1.69788 1.06351 1.26306 1.58980 1.25509 0.96429 1.00858 1.03249 0.85271 0.77365 0.79398 0.78110 1.20327 1.21437 1.20884 1.19498 0.91081 0.85436 1.41932 0.91670 1.42488 1.05495 1.00511 1.88330 1.20604 0.94625 0.86125 0.92689 0.95089 1.21739 0.98421 0.94407 1.00952 1.21926 1.00380 0.96913 0.96826 1.22911 0.98431 0.90169 0.92031 1.48147 1.18176 1.10872 1.54357 1.18437 0.81031 0.87904 0.78010 1.90757 1.59395 1.43588 1.52088 1.20405 0.91924 0.90047 1.02503 1.21562 0.94487 0.99576 1.01792 1.20984 1.01197 0.89205 0.94466 1.20560 0.93513 0.96756 1.03920 1.22063 1.00107 0.89424 1.12629 1.22839 0.87481 0.94951 0.97552 1.41750 1.12859 1.01646 1.61746 0.72587 1.18794 0.90946 0.86602 1.02333 1.66312 1.37743 0.97451 1.16490 1.22323 0.96749 0.82824 1.00194 0.93767 0.78971 0.91495 0.91880 0.92563 0.87483 0.84033 0.90985 0.83956 0.80985 0.80469 0.75459 0.92843 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.33 13.06 21.65 0.28 -60.05 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 48.49 29.55 68.60 2.03 50.52 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.67 9.93 84.03 0.83 -13.84 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.73 -38.85 5.13 -322.57 -1.65 -40.50 16 10 C 0.17 7.39 2.92 45.07 0.13 7.52 16 11 H 0.03 1.46 8.08 -2.39 -0.02 1.45 16 12 C -0.12 -3.93 5.36 30.62 0.16 -3.77 16 13 C -0.12 -3.17 6.08 30.67 0.19 -2.98 16 14 C 0.09 2.34 5.82 86.37 0.50 2.84 16 15 N -0.58 -21.03 2.97 -822.16 -2.44 -23.48 16 16 C 0.56 21.04 7.62 86.82 0.66 21.70 16 17 O -0.58 -26.12 15.81 -3.86 -0.06 -26.18 16 18 C 0.10 2.85 6.48 41.99 0.27 3.12 16 19 C -0.15 -3.80 9.55 22.36 0.21 -3.59 16 20 C -0.03 -0.59 10.17 22.35 0.23 -0.37 16 21 C -0.14 -2.41 6.39 -20.11 -0.13 -2.54 16 22 C -0.22 -1.98 11.08 23.45 0.26 -1.72 16 23 C 0.10 0.48 11.81 83.06 0.98 1.46 16 24 N -0.57 -5.74 6.05 -192.18 -1.16 -6.91 16 25 H 0.43 2.25 8.96 -92.71 -0.83 1.42 16 26 C 0.25 4.81 8.43 134.15 1.13 5.94 16 27 N -0.46 -11.59 6.32 -181.82 -1.15 -12.73 16 28 C 0.10 4.47 6.03 86.36 0.52 4.99 16 29 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.38 21.01 7.80 -92.70 -0.72 20.28 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.14 3.55 4.22 -44.61 -0.19 3.37 16 36 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 37 H 0.14 3.65 7.69 -2.91 -0.02 3.63 16 38 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.23 -1.15 8.06 -2.91 -0.02 -1.18 16 41 H 0.05 2.67 7.00 -2.39 -0.02 2.65 16 42 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -80.40 346.27 1.60 -78.79 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.66 Total: 25.35 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.42 Total: 15.19 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -6.13 Total: -143.67 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.18 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -80.40 1.60 -78.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999428752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.172 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds