Wall clock time and date at job start Fri Apr 10 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00277 * 2 1 4 4 H 1.48498 * 109.46821 * 270.27881 * 3 2 1 5 5 H 1.48498 * 109.46968 * 30.27759 * 3 2 1 6 6 H 1.48498 * 109.47294 * 150.27754 * 3 2 1 7 7 C 1.38818 * 119.99697 * 180.27754 * 2 1 3 8 8 H 1.07996 * 119.99773 * 179.72449 * 7 2 1 9 9 N 1.36930 * 120.00114 * 359.72039 * 7 2 1 10 10 C 1.46498 * 120.00140 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49799 * 34.93249 * 10 9 7 12 12 C 1.53037 * 109.50058 * 155.00110 * 10 9 7 13 13 C 1.53038 * 109.54128 * 181.31668 * 12 10 9 14 14 C 1.53195 * 109.31145 * 298.63395 * 13 12 10 15 15 N 1.46925 * 108.77413 * 54.63533 * 14 13 12 16 16 C 1.34779 * 120.63427 * 126.41098 * 15 14 13 17 17 O 1.21542 * 120.00276 * 179.97438 * 16 15 14 18 18 C 1.47958 * 119.99457 * 359.92534 * 16 15 14 19 19 C 1.39787 * 119.31728 * 202.30802 * 18 16 15 20 20 C 1.37018 * 119.45536 * 179.74516 * 19 18 16 21 21 C 1.39765 * 118.23722 * 0.50097 * 20 19 18 22 22 C 1.46147 * 134.24714 * 179.74326 * 21 20 19 23 23 C 1.34435 * 106.91967 * 180.02562 * 22 21 20 24 24 N 1.36722 * 110.00499 * 359.97438 * 23 22 21 25 25 H 0.96999 * 124.99816 * 179.97438 * 24 23 22 26 26 C 1.37555 * 110.00325 * 359.97438 * 24 23 22 27 27 N 1.32168 * 133.20511 * 180.02562 * 26 24 23 28 28 C 1.46929 * 118.74094 * 306.38994 * 15 14 13 29 29 H 0.97008 * 119.99770 * 359.72423 * 1 2 3 30 30 H 0.97000 * 119.99998 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.45888 * 301.33722 * 12 10 9 32 32 H 1.09005 * 109.46072 * 61.30925 * 12 10 9 33 33 H 1.08997 * 109.49656 * 58.58592 * 13 12 10 34 34 H 1.09001 * 109.49778 * 178.68270 * 13 12 10 35 35 H 1.08999 * 109.58482 * 174.41863 * 14 13 12 36 36 H 1.09000 * 109.58515 * 294.84763 * 14 13 12 37 37 H 1.08004 * 120.27254 * 359.97438 * 19 18 16 38 38 H 1.08006 * 120.87915 * 180.23871 * 20 19 18 39 39 H 1.08004 * 126.54035 * 359.97438 * 22 21 20 40 40 H 1.08000 * 124.99868 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.58241 * 293.82512 * 28 15 14 42 42 H 1.08989 * 109.58937 * 173.39724 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4918 2.0497 -1.4001 5 1 1.4507 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0058 8 1 3.0901 -1.2022 -0.0103 9 7 1.3255 -2.3881 -0.0058 10 6 2.0579 -3.6568 -0.0114 11 1 2.9716 -3.5520 0.5737 12 6 1.1834 -4.7542 0.5992 13 6 1.9596 -6.0729 0.6239 14 6 2.3141 -6.4791 -0.8100 15 7 3.0307 -5.3689 -1.4525 16 6 4.2312 -5.5699 -2.0312 17 8 4.8138 -4.6434 -2.5598 18 6 4.8404 -6.9182 -2.0220 19 6 6.2234 -7.0455 -2.1800 20 6 6.7911 -8.2925 -2.1667 21 6 5.9529 -9.3990 -2.0043 22 6 6.1703 -10.8430 -1.9442 23 6 4.9652 -11.4132 -1.7716 24 7 3.9959 -10.4506 -1.7160 25 1 3.0485 -10.6213 -1.5969 26 6 4.5618 -9.2045 -1.8538 27 7 4.0630 -7.9806 -1.8671 28 6 2.4136 -4.0355 -1.4525 29 1 -0.4850 0.8401 0.0040 30 1 0.3555 -2.3880 -0.0021 31 1 0.9085 -4.4755 1.6165 32 1 0.2812 -4.8753 -0.0004 33 1 2.8744 -5.9458 1.2027 34 1 1.3446 -6.8486 1.0803 35 1 2.9509 -7.3635 -0.7924 36 1 1.4010 -6.6945 -1.3650 37 1 6.8399 -6.1680 -2.3079 38 1 7.8577 -8.4173 -2.2829 39 1 7.1182 -11.3544 -2.0242 40 1 4.7887 -12.4755 -1.6890 41 1 1.5086 -4.0518 -2.0600 42 1 3.1159 -3.3078 -1.8589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999428756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:54 Heat of formation + Delta-G solvation = 70.077173 kcal Electronic energy + Delta-G solvation = -25735.528244 eV Core-core repulsion = 22103.137095 eV Total energy + Delta-G solvation = -3632.391149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90638 -39.98066 -37.91347 -37.04898 -34.49159 -33.36067 -32.15510 -31.09170 -30.42481 -29.78615 -28.07306 -25.67212 -24.00478 -23.95088 -22.90061 -21.77233 -21.17975 -20.40595 -19.12856 -18.75367 -17.26008 -17.03129 -16.64471 -15.88451 -15.56833 -15.06355 -14.85471 -14.60466 -14.40583 -14.14756 -13.72521 -13.62719 -13.41940 -13.38073 -13.24002 -12.67408 -12.48445 -12.36716 -12.21952 -12.03598 -11.31860 -11.01479 -10.81426 -10.76958 -10.59790 -10.51499 -10.16862 -10.06584 -9.76883 -9.67329 -9.07668 -8.98720 -8.77535 -8.41315 -8.22152 -6.95531 -5.74846 -3.04302 0.41179 1.05871 2.23032 2.35312 2.91223 3.22796 3.48291 3.53377 3.55142 3.73682 4.10280 4.33140 4.40507 4.61925 4.67068 4.88965 4.95684 5.18885 5.26624 5.32202 5.39384 5.44837 5.50161 5.55112 5.73286 5.88020 5.92171 6.00933 6.03213 6.14416 6.15650 6.21610 6.25297 6.32838 6.44033 6.56335 6.63303 6.79645 6.88320 6.91790 7.09550 7.53376 7.74371 7.75846 8.37854 8.43951 9.55189 10.09661 10.45238 11.47544 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.003015 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.894836 B = 9284.887227 C =10067.451324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.078 3.922 15 N -0.581 5.581 16 C 0.564 3.436 17 O -0.533 6.533 18 C 0.130 3.870 19 C -0.142 4.142 20 C -0.035 4.035 21 C -0.137 4.137 22 C -0.200 4.200 23 C 0.069 3.931 24 N -0.580 5.580 25 H 0.422 0.578 26 C 0.274 3.726 27 N -0.458 5.458 28 C 0.090 3.910 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.180 0.820 41 H 0.063 0.937 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.720 -27.543 -2.299 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.045 4.045 15 N -0.313 5.313 16 C 0.349 3.651 17 O -0.410 6.410 18 C -0.016 4.016 19 C -0.164 4.164 20 C -0.062 4.062 21 C -0.144 4.144 22 C -0.226 4.226 23 C -0.058 4.058 24 N -0.187 5.187 25 H 0.260 0.740 26 C 0.040 3.960 27 N -0.175 5.175 28 C -0.034 4.034 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.088 -26.821 -2.444 28.424 hybrid contribution 0.319 0.674 -0.055 0.747 sum 9.407 -26.147 -2.498 27.900 Atomic orbital electron populations 1.69667 1.05127 1.25705 1.57632 1.24748 0.95517 0.97743 1.02771 0.86180 0.78694 0.83695 0.77615 1.21604 1.21812 1.20666 1.19286 0.91128 0.83981 1.42794 0.91007 1.42382 1.05806 0.99595 1.88077 1.20480 0.94962 0.86429 0.92315 0.93126 1.21838 0.98720 0.94340 1.01573 1.21930 1.00458 0.97840 0.96785 1.22780 0.98238 0.91261 0.92209 1.48135 1.18034 1.11393 1.53702 1.17841 0.81352 0.86250 0.79644 1.90809 1.62022 1.42240 1.45913 1.21009 0.91131 0.91237 0.98253 1.21549 0.94578 0.98871 1.01402 1.20690 0.99994 0.90175 0.95291 1.20062 0.93535 0.94918 1.05908 1.21677 0.98029 0.91049 1.11839 1.21953 0.87459 0.94154 1.02190 1.41555 1.10211 1.02838 1.64082 0.74041 1.18502 0.89593 0.86202 1.01750 1.66532 1.38657 0.96445 1.15880 1.22861 0.97891 0.81502 1.01188 0.93507 0.78086 0.91636 0.92141 0.92055 0.91423 0.85103 0.91994 0.83219 0.84079 0.83006 0.80338 0.91841 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.86 9.93 -15.06 -0.15 -7.00 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -18.35 5.12 -53.31 -0.27 -18.63 16 10 C 0.17 3.53 2.92 -67.81 -0.20 3.33 16 11 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.13 -2.14 5.35 -26.69 -0.14 -2.28 16 13 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 14 C 0.08 1.10 5.97 -3.71 -0.02 1.07 16 15 N -0.58 -10.05 2.97 -173.83 -0.52 -10.57 16 16 C 0.56 10.01 7.60 -12.28 -0.09 9.92 16 17 O -0.53 -11.11 15.91 5.33 0.08 -11.03 16 18 C 0.13 1.88 6.44 -82.99 -0.53 1.35 16 19 C -0.14 -1.74 9.54 -39.45 -0.38 -2.12 16 20 C -0.04 -0.35 10.17 -39.45 -0.40 -0.75 16 21 C -0.14 -1.37 6.39 -105.00 -0.67 -2.04 16 22 C -0.20 -1.37 11.08 -37.75 -0.42 -1.79 16 23 C 0.07 0.36 11.81 -16.71 -0.20 0.16 16 24 N -0.58 -4.08 6.05 -12.09 -0.07 -4.15 16 25 H 0.42 1.95 8.96 -40.82 -0.37 1.59 16 26 C 0.27 2.96 8.43 -155.80 -1.31 1.65 16 27 N -0.46 -5.93 6.38 -8.82 -0.06 -5.99 16 28 C 0.09 1.81 6.02 -3.71 -0.02 1.79 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.39 10.32 7.80 -40.82 -0.32 10.00 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.13 1.73 4.00 -78.95 -0.32 1.42 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.15 1.77 7.77 -52.48 -0.41 1.36 16 38 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.09 2.10 7.00 -51.94 -0.36 1.74 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -34.73 346.39 -10.25 -44.99 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.54 Total: 9.05 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -4.80 Total: 0.88 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.19 Total: -67.10 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.73 -10.25 -44.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999428756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.066 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds