Wall clock time and date at job start Fri Apr 10 2020 22:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86810 * 120.00181 * 2 1 4 4 H 1.48501 * 109.46916 * 270.00053 * 3 2 1 5 5 H 1.48502 * 109.46651 * 29.99796 * 3 2 1 6 6 H 1.48494 * 109.47236 * 149.99978 * 3 2 1 7 7 C 1.38808 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00249 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00415 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00262 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49512 * 324.93167 * 10 9 7 12 12 C 1.53045 * 109.52560 * 204.85090 * 10 9 7 13 13 C 1.53031 * 109.54025 * 178.66584 * 12 10 9 14 14 C 1.52759 * 109.38323 * 61.23896 * 13 12 10 15 15 N 1.46926 * 109.01103 * 305.59104 * 14 13 12 16 16 C 1.34780 * 120.62991 * 233.58109 * 15 14 13 17 17 O 1.21584 * 120.00041 * 183.50897 * 16 15 14 18 18 C 1.47581 * 120.00022 * 3.51055 * 16 15 14 19 19 C 1.40086 * 120.36058 * 129.54128 * 18 16 15 20 20 N 1.31161 * 121.12188 * 180.02562 * 19 18 16 21 21 C 1.33369 * 121.67708 * 359.69067 * 20 19 18 22 22 C 1.41852 * 133.16682 * 179.52600 * 21 20 19 23 23 C 1.34454 * 107.95607 * 180.55192 * 22 21 20 24 24 N 1.36539 * 109.71819 * 0.26257 * 23 22 21 25 25 H 0.97002 * 125.59804 * 179.97438 * 24 23 22 26 26 C 1.37853 * 108.80711 * 0.02562 * 24 23 22 27 27 C 1.38726 * 133.57102 * 179.97438 * 26 24 23 28 28 C 1.46918 * 118.73640 * 53.30527 * 15 14 13 29 29 H 0.96999 * 120.00238 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99772 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.45986 * 298.69297 * 12 10 9 32 32 H 1.09007 * 109.45580 * 58.64576 * 12 10 9 33 33 H 1.09001 * 109.50009 * 181.32050 * 13 12 10 34 34 H 1.09003 * 109.49883 * 301.38753 * 13 12 10 35 35 H 1.09002 * 109.50910 * 185.70193 * 14 13 12 36 36 H 1.08997 * 109.43028 * 65.42925 * 14 13 12 37 37 H 1.08000 * 119.43819 * 359.97438 * 19 18 16 38 38 H 1.07995 * 126.01676 * 0.82132 * 22 21 20 39 39 H 1.08003 * 125.14287 * 180.23067 * 23 22 21 40 40 H 1.07992 * 120.91035 * 0.05833 * 27 26 24 41 41 H 1.08997 * 109.58678 * 66.43301 * 28 15 14 42 42 H 1.09003 * 109.58586 * 186.85521 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5654 -3.2065 0.5900 12 6 5.5011 -2.2595 0.6068 13 6 6.2543 -3.5913 0.6375 14 6 6.4234 -4.1111 -0.7890 15 7 5.1047 -4.1779 -1.4335 16 6 4.6765 -5.3213 -2.0043 17 8 3.6113 -5.3466 -2.5900 18 6 5.5005 -6.5426 -1.9184 19 6 4.9351 -7.7493 -1.4865 20 7 5.6537 -8.8435 -1.4040 21 6 6.9465 -8.8587 -1.7315 22 6 7.9364 -9.8747 -1.7285 23 6 9.0912 -9.3294 -2.1491 24 7 8.9031 -8.0046 -2.4208 25 1 9.5840 -7.3912 -2.7386 26 6 7.5870 -7.6817 -2.1681 27 6 6.8547 -6.5075 -2.2664 28 6 4.2593 -2.9763 -1.4386 29 1 -0.4850 0.8400 0.0004 30 1 3.8645 -0.3621 0.0004 31 1 6.0562 -1.5422 0.0022 32 1 5.3993 -1.8764 1.6222 33 1 7.2345 -3.4446 1.0911 34 1 5.6877 -4.3163 1.2218 35 1 6.8686 -5.1057 -0.7636 36 1 7.0692 -3.4337 -1.3476 37 1 3.8900 -7.7790 -1.2160 38 1 7.7875 -10.9056 -1.4433 39 1 10.0264 -9.8591 -2.2555 40 1 7.3174 -5.5918 -2.6035 41 1 4.7250 -2.2044 -2.0512 42 1 3.2769 -3.2224 -1.8418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999470358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:56 Heat of formation + Delta-G solvation = 61.229103 kcal Electronic energy + Delta-G solvation = -25699.127344 eV Core-core repulsion = 22066.352514 eV Total energy + Delta-G solvation = -3632.774830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07218 -40.14349 -38.03946 -37.18330 -34.76518 -33.32527 -32.25231 -31.36127 -30.50998 -29.93235 -28.66623 -25.65972 -24.20173 -23.86920 -23.13673 -21.76295 -21.22149 -20.55737 -19.38586 -18.28009 -17.60461 -17.50673 -16.72211 -16.05422 -15.79659 -15.32809 -14.96338 -14.76773 -14.34454 -14.31690 -13.92127 -13.72926 -13.50056 -13.25079 -13.10462 -12.86340 -12.70998 -12.61558 -12.54994 -12.41485 -11.69551 -11.29360 -10.95154 -10.81980 -10.73454 -10.46976 -10.30774 -10.07801 -9.92256 -9.60013 -9.44490 -9.13138 -8.76021 -8.49011 -8.38343 -7.31361 -5.77652 -3.15434 0.41575 1.07165 2.17153 2.53017 2.79855 3.12170 3.35539 3.37926 3.44074 3.69782 4.01351 4.26129 4.43424 4.56960 4.60686 4.72116 4.78148 4.89831 4.94256 4.99032 5.15193 5.31960 5.38303 5.41940 5.45112 5.57012 5.68232 5.76580 5.77226 5.86404 5.98719 6.03105 6.04232 6.11098 6.20655 6.35102 6.55242 6.61894 6.69608 6.86909 6.95231 7.51542 7.80889 7.97838 8.25748 8.40945 9.17773 9.89310 10.07525 11.40296 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.002973 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.480463 B = 9415.244775 C = 9931.273873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.061 0.939 12 C -0.129 4.129 13 C -0.130 4.130 14 C 0.098 3.902 15 N -0.598 5.598 16 C 0.561 3.439 17 O -0.525 6.525 18 C -0.156 4.156 19 C 0.148 3.852 20 N -0.452 5.452 21 C 0.108 3.892 22 C -0.198 4.198 23 C 0.075 3.925 24 N -0.583 5.583 25 H 0.421 0.579 26 C 0.029 3.971 27 C -0.049 4.049 28 C 0.093 3.907 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.139 0.861 41 H 0.062 0.938 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.962 -16.223 -3.087 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.079 0.921 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.025 4.025 15 N -0.332 5.332 16 C 0.348 3.652 17 O -0.401 6.401 18 C -0.162 4.162 19 C -0.021 4.021 20 N -0.160 5.160 21 C -0.023 4.023 22 C -0.223 4.223 23 C -0.055 4.055 24 N -0.186 5.186 25 H 0.259 0.741 26 C -0.080 4.080 27 C -0.078 4.078 28 C -0.031 4.031 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.185 0.815 38 H 0.171 0.829 39 H 0.197 0.803 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.881 -17.014 -3.146 29.490 hybrid contribution 1.375 2.404 -0.484 2.812 sum 25.255 -14.610 -3.630 29.402 Atomic orbital electron populations 1.69700 1.05119 1.25869 1.57014 1.24684 0.95217 0.97189 1.01775 0.86563 0.79191 0.85059 0.77765 1.21054 1.21706 1.20324 1.19102 0.80342 0.94895 1.43510 0.88988 1.42720 1.04156 1.01677 1.89845 1.20463 0.90969 0.89576 0.92794 0.92121 1.21866 0.96713 0.96338 1.01849 1.21797 1.00837 0.98219 0.96011 1.21921 0.84652 1.01969 0.93992 1.48171 1.18117 1.11527 1.55335 1.17996 0.85467 0.82465 0.79308 1.90849 1.22661 1.84415 1.42190 1.20713 0.93604 0.96481 1.05443 1.22730 0.99765 0.85548 0.94082 1.67274 1.05076 1.28808 1.14836 1.19213 0.90703 0.92627 0.99735 1.20591 0.90709 0.99866 1.11159 1.22031 1.00101 0.83099 1.00261 1.41724 1.08638 1.10178 1.58093 0.74103 1.18959 0.85973 0.96853 1.06256 1.20580 0.92169 0.96012 0.99010 1.22755 0.95697 0.83996 1.00675 0.92979 0.80470 0.92174 0.91270 0.90976 0.91267 0.89713 0.91450 0.81548 0.82901 0.80290 0.84369 0.91989 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 2 C 0.01 0.22 5.50 -17.44 -0.10 0.12 16 3 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.99 10.41 -15.06 -0.16 -7.14 16 8 H 0.09 2.82 8.06 -52.48 -0.42 2.39 16 9 N -0.74 -17.12 4.93 -53.31 -0.26 -17.38 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C -0.13 -1.45 6.06 -26.84 -0.16 -1.61 16 14 C 0.10 1.05 5.37 -3.93 -0.02 1.03 16 15 N -0.60 -8.81 2.98 -174.25 -0.52 -9.33 16 16 C 0.56 8.98 7.24 -12.45 -0.09 8.89 16 17 O -0.52 -10.63 16.48 5.29 0.09 -10.55 16 18 C -0.16 -2.03 5.02 -104.78 -0.53 -2.56 16 19 C 0.15 2.00 10.87 -17.15 -0.19 1.81 16 20 N -0.45 -6.14 10.40 -10.70 -0.11 -6.25 16 21 C 0.11 1.26 7.32 -84.80 -0.62 0.64 16 22 C -0.20 -1.65 10.84 -39.54 -0.43 -2.07 16 23 C 0.08 0.39 11.82 -16.79 -0.20 0.19 16 24 N -0.58 -3.38 6.14 -10.66 -0.07 -3.45 16 25 H 0.42 1.07 8.96 -40.82 -0.37 0.71 16 26 C 0.03 0.28 7.27 -83.95 -0.61 -0.33 16 27 C -0.05 -0.50 7.49 -38.79 -0.29 -0.79 16 28 C 0.09 1.67 6.01 -3.72 -0.02 1.65 16 29 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.36 8.12 5.66 -40.82 -0.23 7.88 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.79 4.56 -51.93 -0.24 0.55 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 38 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.18 0.18 8.06 -52.48 -0.42 -0.25 16 40 H 0.14 1.09 7.12 -52.49 -0.37 0.72 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.10 2.11 7.02 -51.93 -0.36 1.75 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -36.23 343.66 -8.77 -45.01 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.39 Total: 7.35 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.75 Total: 0.87 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.18 Total: -64.97 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.23 -8.77 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999470358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.234 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds